mRNA_M-pyrifera_M_contig1094.1968.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1094.1968.1
Unique NamemRNA_M-pyrifera_M_contig1094.1968.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Match: D7G0S6_ECTSI (Similar to ubiquitin specific peptidase 15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S6_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 8.540e-55
Identity = 90/100 (90.00%), Postives = 96/100 (96.00%), Query Frame = 2 
Query:    2 MLQCLLATEVFSTYFRSLHWKREINQDNPLGMGGKVAEAYAGLNDEAWSGEYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK 301
            MLQCLLATE  STYFRS HWKRE+N+DNPLGMGGK+A AYAGLND+AWSGEYSVVVPNT+KKVVSQYAPMFAG+QQHDASELMSFLLDGIHEDLNRVHKK
Sbjct:  556 MLQCLLATESLSTYFRSQHWKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 655
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BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Match: A0A836CC49_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC49_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.030e-29
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 2 
Query:    2 MLQCLLATEVFSTYFRSLHWKREINQDNPLGMGGKVAEAYAGLNDEAWSGEYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK 301
            MLQCL AT   + YF+S  W  ++N+DN LG  GK+A AYA L    W G Y+ V P  LK+V+ ++AP FAG+QQ D+ ELM FLLDG+HEDLNRV +K
Sbjct:   72 MLQCLSATGALTAYFKSGGWSVDLNEDNALGADGKMARAYAELVRNLWDGRYTQVAPAALKRVIGEHAPAFAGYQQQDSQELMIFLLDGLHEDLNRVRRK 171
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BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Match: H2ZMR1_CIOSA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZMR1_CIOSA)

HSP 1 Score: 120 bits (301), Expect = 1.320e-29
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 2 
Query:    5 LQCLLATEVFSTYFRSLHWKREINQDNPLGMGGKVAEAYAGLNDEAWSGEYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK 301
            LQCL      + YF+S  +K+E+N+ NPLGMGGK+A+AYA L    WSG+ S   P   K  VSQ+AP F+G+QQHD+ EL SFL+DG+HEDLNR+ KK
Sbjct:  129 LQCLSNVPAMTNYFKSNTYKKELNKTNPLGMGGKLAQAYAQLIQSIWSGDQSSFAPREFKMKVSQFAPRFSGYQQHDSQELFSFLVDGLHEDLNRISKK 227
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BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Match: H2ZMQ7_CIOSA (Ubiquitin carboxyl-terminal hydrolase n=8 Tax=Ciona savignyi TaxID=51511 RepID=H2ZMQ7_CIOSA)

HSP 1 Score: 120 bits (301), Expect = 1.370e-29
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 2 
Query:    5 LQCLLATEVFSTYFRSLHWKREINQDNPLGMGGKVAEAYAGLNDEAWSGEYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK 301
            LQCL      + YF+S  +K+E+N+ NPLGMGGK+A+AYA L    WSG+ S   P   K  VSQ+AP F+G+QQHD+ EL SFL+DG+HEDLNR+ KK
Sbjct:  264 LQCLSNVPAMTNYFKSNTYKKELNKTNPLGMGGKLAQAYAQLIQSIWSGDQSSFAPREFKMKVSQFAPRFSGYQQHDSQELFSFLVDGLHEDLNRISKK 362
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BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Match: A0A8C5MUM4_9ANUR (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5MUM4_9ANUR)

HSP 1 Score: 119 bits (299), Expect = 2.570e-29
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 2 
Query:    5 LQCLLATEVFSTYFRSLHWKREINQDNPLGMGGKVAEAYAGLNDEAWSGEYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK 301
            LQCL  T   + YFR+  +K+EIN+DNPLGM G++A AYA L  + WSGE+S V P   K  V ++AP F+G+QQ D+ EL++FLLDG+HEDLNRV KK
Sbjct:  320 LQCLSNTPPLTEYFRTDEYKKEINRDNPLGMKGEIAMAYAELIRQIWSGEHSYVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK 418
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BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Match: A0A7S0MND2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MND2_9CRYP)

HSP 1 Score: 114 bits (285), Expect = 2.640e-29
Identity = 53/100 (53.00%), Postives = 73/100 (73.00%), Query Frame = 2 
Query:    5 LQCLLATEVFSTYFRSLHWKREINQDNPLGMGGKVAEAYAGLNDEAW-SGEYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK 301
            LQCL  TE  + YF   HW++++N++NPLGM G++AEAY  +  + W +G+   V P  LK V++++AP FAG  QHDA EL+SFLLDG+HEDLNRV +K
Sbjct:   38 LQCLSNTEALTRYFLQGHWQQDLNEENPLGMKGQLAEAYCSVLQDLWGNGQAFSVNPRELKAVIARFAPHFAGFLQHDAQELLSFLLDGLHEDLNRVREK 137
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BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Match: A0A7S2Y964_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y964_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.200e-29
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 2 
Query:    5 LQCLLATEVFSTYFRSLHWKREINQDNPLGMG-GKVAEAYAGLNDEAWSGEYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK 301
            LQCL AT   + YF    +KREIN DNPLG G G++A AYA +    WSG+   + P+  KK + ++AP F G+QQHDA EL++F+LDGIHEDLNRV +K
Sbjct:   11 LQCLSATIPLTDYFLGYDYKREINHDNPLGTGHGQLATAYANMLSNLWSGKSLSIKPSKFKKQLGEFAPQFQGYQQHDAQELLAFMLDGIHEDLNRVKQK 110
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BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Match: A0A812W4G2_9DINO (Usp4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812W4G2_9DINO)

HSP 1 Score: 119 bits (297), Expect = 4.800e-29
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 2 
Query:    2 MLQCLLATEVFSTYFRSLHWKREINQDNPLGMGGKVAEAYAGLNDEAWSGEYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK 301
            MLQCL A E  + +F    W+ E+N DN LG GG++A AYA L +  WSG+YSV  P+ +K  V + +P F G QQHD+ ELMSFLLDGIHEDLNR+ KK
Sbjct:  304 MLQCLNACEPLTQHFLDGKWEAEVNPDNVLGQGGRIASAYAALLEAMWSGKYSVCSPSVVKSEVGRASPQFQGFQQHDSQELMSFLLDGIHEDLNRILKK 403
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BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Match: W7U3R5_9STRA (Ubiquitin carboxyl-terminal hydrolase 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3R5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.610e-29
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:    2 MLQCLLATEVFSTYFRSLHWKREINQDNPLGMGGKVAEAYAGLNDEAWSGEYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK 301
            MLQCL  T V + +F S   + +IN+DNPLG  G +A  YA L  + WSG ++ + P   K+V+SQYAP FAG+QQHD+ ELM+FLLDG+HEDLNRV +K
Sbjct:  600 MLQCLSHTGVLTDFFLSGKHEGQINEDNPLGKQGVLARTYAKLLKDMWSGRFTFIYPTEFKRVISQYAPQFAGYQQHDSQELMNFLLDGLHEDLNRVRQK 699
[Close]
BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Match: UPI001C4DAAC3 (ubiquitin carboxyl-terminal hydrolase 4 n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4DAAC3)

HSP 1 Score: 117 bits (294), Expect = 8.750e-29
Identity = 56/99 (56.57%), Postives = 70/99 (70.71%), Query Frame = 2 
Query:    5 LQCLLATEVFSTYFRSLHWKREINQDNPLGMGGKVAEAYAGLNDEAWSGEYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK 301
            LQCL  T   + YF    ++ EINQDNPLGM G++AEAYA L  + WSG Y+ V P   K  V ++AP F+G+QQ D+ EL+SFLLDG+HEDLNRV KK
Sbjct:  325 LQCLSNTPPLTEYFLEDEYEAEINQDNPLGMRGEIAEAYAELIKQMWSGRYTHVAPRIFKTQVGRFAPQFSGYQQQDSQELLSFLLDGLHEDLNRVKKK 423
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1094.1968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S6_ECTSI8.540e-5590.00Similar to ubiquitin specific peptidase 15 n=2 Tax... [more]
A0A836CC49_9STRA1.030e-2955.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
H2ZMR1_CIOSA1.320e-2955.56Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Cion... [more]
H2ZMQ7_CIOSA1.370e-2955.56Ubiquitin carboxyl-terminal hydrolase n=8 Tax=Cion... [more]
A0A8C5MUM4_9ANUR2.570e-2956.57Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Lept... [more]
A0A7S0MND2_9CRYP2.640e-2953.00Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S2Y964_9STRA4.200e-2954.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A812W4G2_9DINO4.800e-2956.00Usp4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
W7U3R5_9STRA6.610e-2955.00Ubiquitin carboxyl-terminal hydrolase 4 n=2 Tax=Mo... [more]
UPI001C4DAAC38.750e-2956.57ubiquitin carboxyl-terminal hydrolase 4 n=1 Tax=Sc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1094contigM-pyrifera_M_contig1094:28570..29232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue5.2e-47
Seed eggNOG ortholog2880.D7G0S6
KEGG koko:K11835,ko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Exons2
Model size301
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1094.1968.1prot_M-pyrifera_M_contig1094.1968.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1094 28571..29232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.4711602-UTR-M-pyrifera_M_contig1094:28569..285701622815604.4711602-UTR-M-pyrifera_M_contig1094:28569..28570Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1094 28570..28570 +
1692277483.6600869-UTR-M-pyrifera_M_contig1094:28569..285701692277483.6600869-UTR-M-pyrifera_M_contig1094:28569..28570Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1094 28570..28570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.4855418-CDS-M-pyrifera_M_contig1094:28570..287081622815604.4855418-CDS-M-pyrifera_M_contig1094:28570..28708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1094 28571..28708 +
1692277483.6705499-CDS-M-pyrifera_M_contig1094:28570..287081692277483.6705499-CDS-M-pyrifera_M_contig1094:28570..28708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1094 28571..28708 +
1622815604.5009973-CDS-M-pyrifera_M_contig1094:29070..292321622815604.5009973-CDS-M-pyrifera_M_contig1094:29070..29232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1094 29071..29232 +
1692277483.6796858-CDS-M-pyrifera_M_contig1094:29070..292321692277483.6796858-CDS-M-pyrifera_M_contig1094:29070..29232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1094 29071..29232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1094.1968.1

>prot_M-pyrifera_M_contig1094.1968.1 ID=prot_M-pyrifera_M_contig1094.1968.1|Name=mRNA_M-pyrifera_M_contig1094.1968.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MLQCLLATEVFSTYFRSLHWKREINQDNPLGMGGKVAEAYAGLNDEAWSG
EYSVVVPNTLKKVVSQYAPMFAGHQQHDASELMSFLLDGIHEDLNRVHKK
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mRNA from alignment at M-pyrifera_M_contig1094:28570..29232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1094.1968.1 ID=mRNA_M-pyrifera_M_contig1094.1968.1|Name=mRNA_M-pyrifera_M_contig1094.1968.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=663bp|location=Sequence derived from alignment at M-pyrifera_M_contig1094:28570..29232+ (Macrocystis pyrifera P11B4 male)
CATGTTGCAGTGCCTGCTCGCCACGGAGGTGTTTTCTACGTACTTCCGTA
GCCTGCACTGGAAGCGGGAGATCAACCAGGACAATCCTCTAGGGATGGGC
GGCAAGGTTGCCGAAGCGTACGCCGGCCTGAACGACGAGGTGAGCCGCTT
CGGCGAAATCGGCCACGGTGCCCGCTTGTCAACCATCTGCATACGCAGCC
CGCCGCTCGAAGAAATTCCCAGGGAACGGATACGAAGGAAGGGGCGATAC
TTTCACCGCACACTAAAAGGGCGAGGGGGGGGGGAGATTCACGGAAATTC
GCAACGTAGCTCCTTGTGTTTTGCGTCTCGCGCGAGCCCGTCTCTACCGT
TGGCGTTTCCCCCCCCCCCCCCTCCAAGCGCGGAAGACACGATTTTGTTG
TTTTTGGTCGGCGTTGGTTGGAATCGATTTGAGCAGACCGAGCTTTTTTT
CCCCGTCTCAGCGCTTGTGTTTTGTGCGCCCCTGGGCCTACCGCACCGCA
GGCGTGGTCTGGGGAGTACTCCGTGGTTGTGCCCAACACCCTGAAGAAGG
TTGTGTCGCAGTACGCCCCCATGTTCGCCGGCCACCAGCAGCACGACGCG
AGCGAGCTCATGAGTTTCCTCCTGGACGGCATCCACGAGGACCTCAACCG
TGTGCACAAGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1094:28570..29232+

>mRNA_M-pyrifera_M_contig1094.1968.1 ID=mRNA_M-pyrifera_M_contig1094.1968.1|Name=mRNA_M-pyrifera_M_contig1094.1968.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig1094:28570..29232+ (Macrocystis pyrifera P11B4 male)
ATGTTGCAGTGCCTGCTCGCCACGGAGGTGTTTTCTACGTACTTCCGTAG
CCTGCACTGGAAGCGGGAGATCAACCAGGACAATCCTCTAGGGATGGGCG
GCAAGGTTGCCGAAGCGTACGCCGGCCTGAACGACGAGATGTTGCAGTGC
CTGCTCGCCACGGAGGTGTTTTCTACGTACTTCCGTAGCCTGCACTGGAA
GCGGGAGATCAACCAGGACAATCCTCTAGGGATGGGCGGCAAGGTTGCCG
AAGCGTACGCCGGCCTGAACGACGAGGCGTGGTCTGGGGAGTACTCCGTG
GTTGTGCCCAACACCCTGAAGAAGGTTGTGTCGCAGTACGCCCCCATGTT
CGCCGGCCACCAGCAGCACGACGCGAGCGAGCTCATGAGTTTCCTCCTGG
ACGGCATCCACGAGGACCTCAACCGTGTGCACAAGAAGGCGTGGTCTGGG
GAGTACTCCGTGGTTGTGCCCAACACCCTGAAGAAGGTTGTGTCGCAGTA
CGCCCCCATGTTCGCCGGCCACCAGCAGCACGACGCGAGCGAGCTCATGA
GTTTCCTCCTGGACGGCATCCACGAGGACCTCAACCGTGTGCACAAGAAG
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