mRNA_M-pyrifera_M_contig109396.1964.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109396.1964.1
Unique NamemRNA_M-pyrifera_M_contig109396.1964.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Match: A0A5C6B8B4_9BACT (Uncharacterized protein n=2 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6B8B4_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 4.230e-17
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 LIDVTLGGNTA---IGTGAA--PGNGGGLHVTGTGAIEILRGSVINNLAAEEGGGLWNGGGPMFIDGTLIDGNIAGGDAAD 234
            L DV L GN+A   IG GA   PGNGGGLHVTG G + I  G VINN AA EGGGLWNG G M +DGTL++GN+A G  AD
Sbjct:  722 LTDVILDGNSAGVDIGQGAVANPGNGGGLHVTGAGGVFITGGQVINNSAAREGGGLWNGTGLMRLDGTLVEGNVASGAMAD 802
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BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Match: A0A2E2W9I1_9FLAO (Por_Secre_tail domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E2W9I1_9FLAO)

HSP 1 Score: 86.7 bits (213), Expect = 2.550e-16
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   52 AAPGNGGGLHVTGTGAIEILRGSVINNLAAEEGGGLWNGGGPMFIDGTLIDGNIAGGDAADQG 240
            A PGNGGGLHVTG G + I  G+V +N+AA EGGGLWNG G M IDGT +DGN A GD ADQG
Sbjct:  199 AMPGNGGGLHVTGPGDVSITDGTVNDNVAAAEGGGLWNGAGEMTIDGTTVDGNTASGDEADQG 261
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BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Match: A0A1P8RUM6_9FLAO (PDZ domain-containing protein n=1 Tax=Winogradskyella sp. J14-2 TaxID=1936080 RepID=A0A1P8RUM6_9FLAO)

HSP 1 Score: 85.1 bits (209), Expect = 9.360e-16
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 VNLIDVTLGGNTAIGTGAAPGNGGGLHVTGTGAIEILRGSVINNLAAEEGGGLWNGGGPMFIDGTLIDGNIAGGDAADQG 240
            + L +V+L  N+    G+APGNGGG H+TG G   I  G+V NN AA EGGGLWNG G M +DGT+ID N A G +ADQG
Sbjct: 1084 ITLTNVSLNENSV---GSAPGNGGGFHITGPGNAAITGGTVNNNFAAAEGGGLWNGTGTMTVDGTIIDNNTASGASADQG 1160
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BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Match: UPI0014225EBE (hypothetical protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI0014225EBE)

HSP 1 Score: 85.1 bits (209), Expect = 9.550e-16
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    7 LIDVTLGGNTA-------IGTG--AAPGNGGGLHVTGTGAIEILRGSVINNLAAEEGGGLWNGGGPMFIDGTLIDGNIAGGDAADQG 240
            L +VT+GGN+A       +GT   AAPGNGGGLHVTG G + +  G   NN+AA EGGGLWNG G M ++GT++  NIA GDAAD G
Sbjct: 1342 LSNVTIGGNSAGVDIMAPVGTTPVAAPGNGGGLHVTGDGNVNVTGGIFQNNVAALEGGGLWNGSGTMTVNGTVVLQNIASGDAADDG 1428
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BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Match: UPI001E31C013 (T9SS type A sorting domain-containing protein n=1 Tax=Aegicerativicinus sediminis TaxID=2893202 RepID=UPI001E31C013)

HSP 1 Score: 84.7 bits (208), Expect = 1.170e-15
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    7 LIDVTLGGNTAIGTGAAPGNGGGLHVTGTGAIEILRGSVINNLAAEEGGGLWNGGGPMFIDGTLIDGNIAGGDAADQG 240
            L ++TL  NT   TG++PGNGGGLHVTG G +    G++ NN AA EGGGLWNG G M + GT+++ N A G+A+DQG
Sbjct:  273 LQNITLNLNT---TGSSPGNGGGLHVTGNGTVNFTFGTISNNTAASEGGGLWNGSGNMTLTGTVVNNNTASGNASDQG 347
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BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Match: A3U9E0_CROAH (Probable extracellular nuclease n=3 Tax=Croceibacter TaxID=216431 RepID=A3U9E0_CROAH)

HSP 1 Score: 83.6 bits (205), Expect = 3.210e-15
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 VNLIDVTLGGNTAIGTGAAPGNGGGLHVTGTGAIEILRGSVINNLAAEEGGGLWNGGGPMFIDGTLIDGNIAGGD 225
            VNL +VTL  N A G   APGNGGGLHV+G+ AI I  G+V  N A++EGGGLWN  G M I GT IDGN A GD
Sbjct:  680 VNLTNVTLDNNNAGGVAPAPGNGGGLHVSGSSAINITGGTVSGNTASKEGGGLWNNQGVMTITGTTIDGNDAQGD 754
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BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Match: M5SQC2_9BACT (Extracellular nuclease n=1 Tax=Rhodopirellula europaea SH398 TaxID=1263868 RepID=M5SQC2_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 6.000e-15
Identity = 48/81 (59.26%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 VNLIDVTLGGNTAIGTG-AAPGNGGGLHVTGTGAIEILRGSVINNLAAEEGGGLWNGGGPMFIDGTLIDGNIAGGDAADQG 240
            ++L  + L GN A  TG AAPGNGGG+HVTGTG   I  GSV++N AA EGGGLWN  G M + GTLI  N+A G AAD G
Sbjct:  619 LDLESIDLIGNVAGPTGSAAPGNGGGIHVTGTGDTTITGGSVLDNSAAREGGGLWNDQGTMTVVGTLISENVASGGAADDG 699
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BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Match: A0A1G6FBA7_9FLAO (Por secretion system C-terminal sorting domain-containing protein n=1 Tax=Flavobacteriaceae bacterium MAR_2010_188 TaxID=1250295 RepID=A0A1G6FBA7_9FLAO)

HSP 1 Score: 82.4 bits (202), Expect = 7.450e-15
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    1 VNLIDVTLGGNTAIGTGAAPGNGGGLHVTGTGAIEILRGSVINNLAAEEGGGLWNGGGPMFIDGTLIDGNIAGGDAAD 234
            V+L++V L  N+   TG++PGNGGGLHVTG G   ++ G+V NN A+ EGGGLWNG G M +D   +DGN A GDA D
Sbjct:  622 VSLMNVMLNDNS---TGSSPGNGGGLHVTGAGDTSVVLGTVNNNDASSEGGGLWNGSGTMTVDRVTLDGNTASGDALD 696
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BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Match: A0A7H5EV79_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Lewinella sp. W8 TaxID=2528208 RepID=A0A7H5EV79_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 7.880e-15
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    7 LIDVTLGGNTAIGTGAAPGNGGGLHVTGTGAIEILRGSVINNLAAEEGGGLWNGGGPMFIDGTLIDGNIAGGDAADQG 240
            L DVT  GN+   TG+APGNGG +H+TG   + +  G+VINN+A  EGGGLWNG G M I G +IDGN A G  ++QG
Sbjct: 1106 LTDVTFDGNS---TGSAPGNGGAVHITGPSNMNVTGGTVINNMAVAEGGGLWNGTGVMNITGVMIDGNTASGAESNQG 1180
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BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Match: UPI0020036676 (T9SS type A sorting domain-containing protein n=1 Tax=Subsaxibacter sp. CAU 1640 TaxID=2933271 RepID=UPI0020036676)

HSP 1 Score: 82.4 bits (202), Expect = 7.910e-15
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 VNLIDVTLGGN-TAIGTGA-APGNGGGLHVTGTGAIEILRGSVINNLAAEEGGGLWNGGGPMFIDGTLIDGNIAGGDAADQG 240
            V L +V L  N T + TGA APGNGGGLHV+G+G ++++ G+V  N AA EGGGLWNG G M +D T ID N A G AA++G
Sbjct:  925 VTLTNVMLNSNDTGVVTGAGAPGNGGGLHVSGSGTVDVIGGTVSMNTAASEGGGLWNGTGTMTVDATTIDDNTANGAAANEG 1006
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109396.1964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C6B8B4_9BACT4.230e-1762.96Uncharacterized protein n=2 Tax=Stieleria varia Ta... [more]
A0A2E2W9I1_9FLAO2.550e-1668.25Por_Secre_tail domain-containing protein n=1 Tax=F... [more]
A0A1P8RUM6_9FLAO9.360e-1656.25PDZ domain-containing protein n=1 Tax=Winogradskye... [more]
UPI0014225EBE9.550e-1656.32hypothetical protein n=1 Tax=Rubinisphaera sp. JC6... [more]
UPI001E31C0131.170e-1555.13T9SS type A sorting domain-containing protein n=1 ... [more]
A3U9E0_CROAH3.210e-1561.33Probable extracellular nuclease n=3 Tax=Croceibact... [more]
M5SQC2_9BACT6.000e-1559.26Extracellular nuclease n=1 Tax=Rhodopirellula euro... [more]
A0A1G6FBA7_9FLAO7.450e-1555.13Por secretion system C-terminal sorting domain-con... [more]
A0A7H5EV79_9BACT7.880e-1555.13T9SS type A sorting domain-containing protein n=1 ... [more]
UPI00200366767.910e-1556.10T9SS type A sorting domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109396contigM-pyrifera_M_contig109396:24..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score86.3
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog216432.CA2559_10338
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1HZV9@117743,4NGEX@976,COG3210@1,COG3210@2
COG Functional cat.U
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size582
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.133196-CDS-M-pyrifera_M_contig109396:23..6051622815604.133196-CDS-M-pyrifera_M_contig109396:23..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109396 24..605 +
1692277483.477719-CDS-M-pyrifera_M_contig109396:23..6051692277483.477719-CDS-M-pyrifera_M_contig109396:23..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109396 24..605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109396.1964.1prot_M-pyrifera_M_contig109396.1964.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109396 24..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109396.1964.1

>prot_M-pyrifera_M_contig109396.1964.1 ID=prot_M-pyrifera_M_contig109396.1964.1|Name=mRNA_M-pyrifera_M_contig109396.1964.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
VNLIDVTLGGNTAIGTGAAPGNGGGLHVTGTGAIEILRGSVINNLAAEEG
GGLWNGGGPMFIDGTLIDGNIAGGDAADQGGGGIFNKGGIVTIFGGATIS
NNSALGTSGSGGGIFNDTGGVIDIADVDGAVTISGNIANRAGGGIEDNGG
AALFPNVTLDGVTLSDNTAGPAGIAAPGNGGGLHVTGPGSVFIS
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mRNA from alignment at M-pyrifera_M_contig109396:24..605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109396.1964.1 ID=mRNA_M-pyrifera_M_contig109396.1964.1|Name=mRNA_M-pyrifera_M_contig109396.1964.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig109396:24..605+ (Macrocystis pyrifera P11B4 male)
GTCAATCTGATCGATGTCACACTCGGCGGCAACACGGCCATCGGCACGGG
AGCGGCTCCCGGTAACGGTGGTGGTTTGCACGTAACGGGTACAGGTGCGA
TCGAGATCCTCCGTGGTTCGGTCATTAACAATCTCGCAGCCGAAGAGGGC
GGTGGTCTGTGGAACGGCGGCGGCCCGATGTTCATCGACGGTACGCTGAT
TGACGGCAACATCGCGGGCGGCGACGCGGCCGACCAAGGCGGCGGTGGCA
TCTTCAACAAGGGTGGCATTGTGACCATCTTTGGCGGGGCCACGATTTCC
AACAACTCGGCCCTTGGCACGAGTGGCAGTGGCGGCGGCATCTTCAACGA
CACGGGCGGAGTGATCGACATCGCTGACGTGGACGGTGCTGTCACGATCA
GCGGCAACATTGCCAATCGAGCCGGTGGTGGCATCGAAGACAATGGAGGT
GCGGCCCTCTTCCCCAACGTCACGTTGGATGGCGTCACGCTCAGTGACAA
CACGGCTGGACCAGCCGGCATTGCGGCTCCCGGCAATGGTGGGGGCTTAC
ACGTGACCGGACCGGGCAGTGTGTTCATCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109396:24..605+

>mRNA_M-pyrifera_M_contig109396.1964.1 ID=mRNA_M-pyrifera_M_contig109396.1964.1|Name=mRNA_M-pyrifera_M_contig109396.1964.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig109396:24..605+ (Macrocystis pyrifera P11B4 male)
GTCAATCTGATCGATGTCACACTCGGCGGCAACACGGCCATCGGCACGGG
AGCGGCTCCCGGTAACGGTGGTGGTTTGCACGTAACGGGTACAGGTGCGA
TCGAGATCCTCCGTGGTTCGGTCATTAACAATCTCGCAGCCGAAGAGGGC
GGTGGTCTGTGGAACGGCGGCGGCCCGATGTTCATCGACGGTACGCTGAT
TGACGGCAACATCGCGGGCGGCGACGCGGCCGACCAAGGCGGCGGTGGCA
TCTTCAACAAGGGTGGCATTGTGACCATCTTTGGCGGGGCCACGATTTCC
AACAACTCGGCCCTTGGCACGAGTGGCAGTGGCGGCGGCATCTTCAACGA
CACGGGCGGAGTGATCGACATCGCTGACGTGGACGGTGCTGTCACGATCA
GCGGCAACATTGCCAATCGAGCCGGTGGTGGCATCGAAGACAATGGAGGT
GCGGCCCTCTTCCCCAACGTCACGTTGGATGGCGTCACGCTCAGTGACAA
CACGGCTGGACCAGCCGGCATTGCGGCTCCCGGCAATGGTGGGGGCTTAC
ACGTGACCGGACCGGGCAGTGTGTTCATCTCCGTCAATCTGATCGATGTC
ACACTCGGCGGCAACACGGCCATCGGCACGGGAGCGGCTCCCGGTAACGG
TGGTGGTTTGCACGTAACGGGTACAGGTGCGATCGAGATCCTCCGTGGTT
CGGTCATTAACAATCTCGCAGCCGAAGAGGGCGGTGGTCTGTGGAACGGC
GGCGGCCCGATGTTCATCGACGGTACGCTGATTGACGGCAACATCGCGGG
CGGCGACGCGGCCGACCAAGGCGGCGGTGGCATCTTCAACAAGGGTGGCA
TTGTGACCATCTTTGGCGGGGCCACGATTTCCAACAACTCGGCCCTTGGC
ACGAGTGGCAGTGGCGGCGGCATCTTCAACGACACGGGCGGAGTGATCGA
CATCGCTGACGTGGACGGTGCTGTCACGATCAGCGGCAACATTGCCAATC
GAGCCGGTGGTGGCATCGAAGACAATGGAGGTGCGGCCCTCTTCCCCAAC
GTCACGTTGGATGGCGTCACGCTCAGTGACAACACGGCTGGACCAGCCGG
CATTGCGGCTCCCGGCAATGGTGGGGGCTTACACGTGACCGGACCGGGCA
GTGTGTTCATCTCC
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