mRNA_M-pyrifera_M_contig109392.1962.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109392.1962.1
Unique NamemRNA_M-pyrifera_M_contig109392.1962.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Match: A0A5A8DJ84_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJ84_CAFRO)

HSP 1 Score: 152 bits (384), Expect = 3.040e-43
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 1
Query:    1 EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAEEKGKR--RYNGWVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWTVVTLVQTMFERRQM 303
            EGDG  Q +W+PFVTGLIA+TIGPL NCP+DVVKTR+MA + K     +Y+GWV   KTIA EEG+GALWKG+IPRLARLAPGQAITWTVV  VQT +ER+ M
Sbjct:  215 EGDGVAQPLWQPFVTGLIASTIGPLFNCPLDVVKTRLMAQDTKRGEVPKYSGWVSTMKTIAAEEGVGALWKGLIPRLARLAPGQAITWTVVATVQTWYERKFM 317          
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Match: A0A812Q505_9DINO (SFC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q505_9DINO)

HSP 1 Score: 142 bits (359), Expect = 1.690e-39
Identity = 66/104 (63.46%), Postives = 80/104 (76.92%), Query Frame = 1
Query:    1 EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAEEKGKR--RYNGWVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWTVVTLVQTMFERRQMG 306
            +GDG+ Q++W PF+ GLIA+  GPL NCPMDVVKTR+MA         +YNGW+HA K I KEEG+ ALWKGI PRLARLAPGQAITWTVVT VQT +E++ + 
Sbjct:  210 DGDGQAQSLWVPFLNGLIASCFGPLANCPMDVVKTRLMAQSSAPGEVAKYNGWLHAMKVIYKEEGLAALWKGIGPRLARLAPGQAITWTVVTQVQTWYEQKYVA 313          
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Match: A0A813BHQ0_9DINO (SFC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BHQ0_9DINO)

HSP 1 Score: 130 bits (327), Expect = 2.950e-35
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    1 EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAEEKGKR--RYNGWVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWT 261
            EGD K Q +W+ F TGL+AA +GP+ NCPMDVVKTR+MA E K     +Y G+VH  KTIAKEEG+ ALWKG++PRL RLAPGQAITWT
Sbjct:  183 EGDKKVQPMWQTFATGLVAAAVGPMFNCPMDVVKTRLMAQETKANEQPKYRGFVHTVKTIAKEEGVRALWKGLVPRLMRLAPGQAITWT 271          
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Match: A0A6G0XJP4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJP4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.540e-34
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAE--EKGKRRYNGWVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWTVVTLVQTMFERR 297
            +GDGK   +WK F+ GL+A ++GP  NCPMDV+KTR+MA E  +    +Y G++HA   IAKEEG  ALWKG+IPRL R+APGQAITWTVV  V   FE +
Sbjct:  216 DGDGKQLEMWKTFINGLVAGSLGPCLNCPMDVIKTRLMAQETVQGVAPKYKGFIHAFNVIAKEEGHAALWKGLIPRLTRMAPGQAITWTVVMRVTAFFENQ 316          
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Match: A0A024T7P3_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024T7P3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.660e-33
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAEEKG--KRRYNGWVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWTVVTLVQTMFE 291
            +GDGK   +WK FV GL+A ++GP  NCPMDV+KTR+MA E     + +Y G++HA   IAKEEG  ALWKG++PRL R+APGQAITWTVV  V   FE
Sbjct:  215 DGDGKQLEMWKTFVNGLVAGSVGPCLNCPMDVIKTRLMAQETVVGVEPKYKGFIHAFNLIAKEEGHAALWKGLVPRLTRMAPGQAITWTVVMRVTAFFE 313          
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Match: A0A7S3PR75_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR75_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.800e-33
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAEE-KGKR-RYNGWVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWTVVTLVQTMFERRQMG 306
            +GDGK  A+WK  + G++A  +GP  NCP+DV+KTRMMA E   G+  +Y  W  A K IAKEEG+ ALWKG+IPRL RLAPGQ ITWTVV  V + FE++ + 
Sbjct:  222 QGDGKQLAVWKTLLNGILAGAVGPCMNCPVDVIKTRMMAQEHIPGQEVKYKNWYQAAKLIAKEEGVPALWKGLIPRLTRLAPGQGITWTVVMRVTSFFEQQGLA 325          
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Match: A0A067BSK2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BSK2_SAPPC)

HSP 1 Score: 122 bits (305), Expect = 2.560e-33
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 1
Query:    1 EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAEE-KG-KRRYNGWVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWTVVTLVQTMFE 291
            +GDGK   +WK  + GL+A ++GP  N PMDV+KTR+MA E  KG + +Y G+VHA   IA+EEG  ALWKG++PRL R+APGQAITWTVV  V + FE
Sbjct:   53 DGDGKQLEVWKTLINGLVAGSLGPCLNSPMDVIKTRLMAQETVKGVEPKYRGFVHAFGVIAREEGNAALWKGLVPRLTRMAPGQAITWTVVMRVTSFFE 151          
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Match: A0A485L8L5_9STRA (Aste57867_16413 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L8L5_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.920e-33
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    1 EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAEE-KGKR-RYNGWVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWTVVTLVQTMFERR 297
            +GDGK   +WK FV GL+A ++GP  NCPMDV+KTR+MA E  KG+  +Y G+V A   IAKEEG  ALWKG++PRL R+APGQAITWTVV  V + FE +
Sbjct:  226 DGDGKTLEVWKTFVNGLVAGSLGPCLNCPMDVIKTRLMAQETVKGQALKYTGFVQAFNLIAKEEGHAALWKGLLPRLTRMAPGQAITWTVVMRVTSFFENQ 326          
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Match: A0A5D6YZX8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YZX8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 9.490e-33
Identity = 61/106 (57.55%), Postives = 80/106 (75.47%), Query Frame = 1
Query:    1 EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAEE-KGKR-RYNGWVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWTVVTLVQTMFERRQMGEK 312
            +GDGK    +  FV GLIA ++GP+ N PMDV+KTR+MA E  KG+  +Y G+VHA + IAKEEG  ALWKG++PRL R+APGQAITWTVV  V ++FE  +MG++
Sbjct:  242 DGDGKTLPSYVTFVNGLIAGSLGPMFNTPMDVLKTRLMAQETVKGQELKYKGFVHALRLIAKEEGPAALWKGLLPRLTRMAPGQAITWTVVMRVTSIFENAEMGDE 347          
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Match: A0A2R5G1X8_9STRA (Mitochondrial succinate-fumarate transporter 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G1X8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.800e-32
Identity = 58/102 (56.86%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAE--EKGKRRYNGWVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWTVVTLVQTMFERRQ 300
            +GDGK  A+W+  + GL+A  +GP  N P+DVVKTRMM  +  + G+ +Y GW    + IA EEG+ ALWKGIIPRL+RLAPGQAITWTVV  V T FE  Q
Sbjct:  249 QGDGKVLAVWQTLLNGLLAGAVGPCLNAPIDVVKTRMMGQDFSKPGEIKYTGWYQTARLIAAEEGLPALWKGIIPRLSRLAPGQAITWTVVMRVSTYFENLQ 350          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109392.1962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DJ84_CAFRO3.040e-4369.90Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A812Q505_9DINO1.690e-3963.46SFC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A813BHQ0_9DINO2.950e-3566.29SFC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A6G0XJP4_9STRA8.540e-3457.43Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024T7P3_9STRA1.660e-3358.59Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A7S3PR75_9STRA1.800e-3355.77Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A067BSK2_SAPPC2.560e-3357.58Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A485L8L5_9STRA2.920e-3359.41Aste57867_16413 protein n=1 Tax=Aphanomyces stella... [more]
A0A5D6YZX8_9STRA9.490e-3357.55Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2R5G1X8_9STRA4.800e-3256.86Mitochondrial succinate-fumarate transporter 1 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109392contigM-pyrifera_M_contig109392:285..602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue3.7e-27
Seed eggNOG ortholog157072.XP_008881384.1
Preferred nameSFC1
KEGG koko:K07964,ko:K15100
KEGG TC2.A.29.7
KEGG ReactionR07811
KEGG Pathwayko00531,ko01100,ko05205,map00531,map01100,map05205
KEGG ModuleM00078
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005469,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015138,GO:0015141,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015741,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071702,GO:0098656,GO:1903825,GO:1905039
EggNOG free text desc.mitochondrial tricarboxylic acid transmembrane transport
EggNOG OGsKOG0756@1,KOG0756@2759
EC3.2.1.166
COG Functional cat.U
CAZyGH79
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko02000
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.0704548-CDS-M-pyrifera_M_contig109392:284..6021622815604.0704548-CDS-M-pyrifera_M_contig109392:284..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109392 285..602 -
1692277483.453857-CDS-M-pyrifera_M_contig109392:284..6021692277483.453857-CDS-M-pyrifera_M_contig109392:284..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109392 285..602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109392.1962.1prot_M-pyrifera_M_contig109392.1962.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109392 285..602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109392.1962.1

>prot_M-pyrifera_M_contig109392.1962.1 ID=prot_M-pyrifera_M_contig109392.1962.1|Name=mRNA_M-pyrifera_M_contig109392.1962.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
EGDGKHQAIWKPFVTGLIAATIGPLCNCPMDVVKTRMMAAEEKGKRRYNG
WVHATKTIAKEEGIGALWKGIIPRLARLAPGQAITWTVVTLVQTMFERRQ
MGEKF*
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mRNA from alignment at M-pyrifera_M_contig109392:285..602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109392.1962.1 ID=mRNA_M-pyrifera_M_contig109392.1962.1|Name=mRNA_M-pyrifera_M_contig109392.1962.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig109392:285..602- (Macrocystis pyrifera P11B4 male)
GAAGGCGACGGAAAACACCAAGCCATCTGGAAACCCTTTGTCACGGGCCT CATTGCAGCCACCATCGGACCGCTCTGCAACTGCCCCATGGACGTGGTCA AGACCCGCATGATGGCCGCCGAGGAGAAAGGCAAGCGCCGCTACAACGGG TGGGTCCACGCCACAAAGACCATCGCGAAGGAGGAGGGCATCGGAGCGCT ATGGAAGGGCATCATCCCAAGACTCGCGCGACTCGCGCCAGGACAGGCCA TCACCTGGACCGTCGTCACGCTCGTGCAGACCATGTTCGAAAGACGGCAA ATGGGAGAAAAGTTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109392:285..602-

>mRNA_M-pyrifera_M_contig109392.1962.1 ID=mRNA_M-pyrifera_M_contig109392.1962.1|Name=mRNA_M-pyrifera_M_contig109392.1962.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig109392:285..602- (Macrocystis pyrifera P11B4 male)
GAAGGCGACGGAAAACACCAAGCCATCTGGAAACCCTTTGTCACGGGCCT
CATTGCAGCCACCATCGGACCGCTCTGCAACTGCCCCATGGACGTGGTCA
AGACCCGCATGATGGCCGCCGAGGAGAAAGGCAAGCGCCGCTACAACGGG
TGGGTCCACGCCACAAAGACCATCGCGAAGGAGGAGGGCATCGGAGCGCT
ATGGAAGGGCATCATCCCAAGACTCGCGCGACTCGCGCCAGGACAGGCCA
TCACCTGGACCGTCGTCACGCTCGTGCAGACCATGTTCGAAAGACGGCAA
ATGGGAGAAAAGTTCTAGGAAGGCGACGGAAAACACCAAGCCATCTGGAA
ACCCTTTGTCACGGGCCTCATTGCAGCCACCATCGGACCGCTCTGCAACT
GCCCCATGGACGTGGTCAAGACCCGCATGATGGCCGCCGAGGAGAAAGGC
AAGCGCCGCTACAACGGGTGGGTCCACGCCACAAAGACCATCGCGAAGGA
GGAGGGCATCGGAGCGCTATGGAAGGGCATCATCCCAAGACTCGCGCGAC
TCGCGCCAGGACAGGCCATCACCTGGACCGTCGTCACGCTCGTGCAGACC
ATGTTCGAAAGACGGCAAATGGGAGAAAAGTTCTAG
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