mRNA_M-pyrifera_M_contig109371.1954.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109371.1954.1
Unique NamemRNA_M-pyrifera_M_contig109371.1954.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Match: A0A0N4UEW2_DRAME (Flavin-containing monooxygenase n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UEW2_DRAME)

HSP 1 Score: 75.9 bits (185), Expect = 4.590e-14
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   19 KVLIVGGGAGGIIAGREFLKRGREFCLFEENEELGGVWRYSPAFGYPAAPPESGEYSSVVYEGLRTNLPKEIMRLSGVPFTGGA-SFPSHSKVL 297
            KV I+GGGA GI A ++ L +G E  +FE+   +GG W Y+P         E   +SS+ YEGLRTNLPKEIM  S +PF     SF SH  VL
Sbjct:    3 KVGIIGGGAAGICAAKKCLNKGYEVAIFEQTNNIGGTWFYTP---------EVNVHSSM-YEGLRTNLPKEIMAFSDLPFPDHLPSFISHKDVL 86          
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Match: A0A087TJ86_STEMI (Flavin-containing monooxygenase FMO GS-OX-like 2 (Fragment) n=3 Tax=Stegodyphus TaxID=175340 RepID=A0A087TJ86_STEMI)

HSP 1 Score: 70.5 bits (171), Expect = 4.430e-12
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1
Query:   19 KVLIVGGGAGGIIAGREFLKRGR--EFCLFEENEELGGVWRYSPAFGYPAAPPESGEYS----SVVYEGLRTNLPKEIMRLSGVPFTG--GASFPSHSKVL 297
            KV ++G GA G+ AGR  +      +F +FE+ +++GG WRYSP  G       S EY     S +Y+ L+TNLPKE+M     PF    G SF  H+ VL
Sbjct:   11 KVAVIGAGAAGLCAGRHLISEPEKFQFDIFEQQDDVGGTWRYSPRVG-------SDEYGLPVHSSMYKNLKTNLPKEVMAFPDFPFPDCDGQSFLHHTVVL 104          
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Match: A0A1S3BKR3_CUCME (Flavin-containing monooxygenase n=3 Tax=Cucumis TaxID=3655 RepID=A0A1S3BKR3_CUCME)

HSP 1 Score: 68.9 bits (167), Expect = 1.570e-11
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   19 KVLIVGGGAGGIIAGREFLKRGREFCLFEENEELGGVWRYSPAFGYP--AAPPESGEYSSVVYEGLRTNLPKEIMRLSGVPFTGGAS-------FPSHSKVL 297
            +V ++G G  G+I+ RE  + G +  +FE N ++GGVW YSP          P      S +Y+ LRTN+P+E+M +   PF            FPSH +VL
Sbjct:    6 RVAVIGAGGAGLISARELSREGHQVVVFERNNQIGGVWVYSPEIESDPLGLDPNRTRIHSSLYKSLRTNIPRELMGVRDFPFVPREGEDRDPRRFPSHKEVL 107          
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Match: UPI0015A9DE32 (senecionine N-oxygenase-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A9DE32)

HSP 1 Score: 67.8 bits (164), Expect = 2.130e-11
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 1
Query:   19 KVLIVGGGAGGIIAGREFLKRGR--EFCLFEENEELGGVWRYSPAFGYPAAPPESGEYS----SVVYEGLRTNLPKEIMRLSGVPFTG--GASFPSHSKVL 297
            KV ++G G  G+ AGR  +      +F +FE+ + +GG WRYSP  G       + EY     S +Y+ L+TNLPKE+M     PF G  G S+  H+ +L
Sbjct:   58 KVAVIGAGVSGLCAGRHLISEPEKFQFDIFEQQDNVGGTWRYSPRVG-------TDEYGLSVHSSMYKNLKTNLPKEVMAFPDFPFPGCGGQSYLHHTALL 151          
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Match: UPI0015BADC66 (NAD(P)-binding domain-containing protein n=1 Tax=Francisella sp. Scap27 TaxID=2589986 RepID=UPI0015BADC66)

HSP 1 Score: 67.8 bits (164), Expect = 3.940e-11
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   22 VLIVGGGAGGIIAGREFLKRGREFCLFEENEELGGVWRYSPAFGYPAAPPESGEYSSVVYEGLRTNLPKEIMRLSG--VPFTGGASFPSHSKV 294
            V I+G GA GII  ++FL  G    +FE+++   GVW +S               S VVY+ LRTNLPKEIM      VP+ G  SFP +++V
Sbjct:   12 VAIIGAGASGIICAKKFLDAGFNVTIFEKSDNTAGVWNFSD--------------SGVVYDSLRTNLPKEIMAFEDQLVPYGGEESFPGYAEV 90          
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Match: A0A8J5WPK7_ZIZPA (Flavin-containing monooxygenase n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WPK7_ZIZPA)

HSP 1 Score: 67.4 bits (163), Expect = 4.530e-11
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 1
Query:   19 KVLIVGGGAGGIIAGREFLKRGREFCLFEENEELGGVWRYSPAFGYPAAPPESGEYS--SVVYEGLRTNLPKEIMRLSGVPFTGGAS------FPSHSKVL 297
            ++ +VGGGA G+ A REF + G    +FE    +GG W Y+     PAA    G  +  S +Y  LRTNLP+E+M     PF  GA       FP H +VL
Sbjct:    7 RLAVVGGGAAGLAAAREFRREGHSPVVFERAAAVGGTWLYAA----PAAADPLGAAATHSSLYASLRTNLPREVMGFIDFPFVAGAGSADPRRFPGHEEVL 103          
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Match: A0A8J5WIX6_ZIZPA (Flavin-containing monooxygenase n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WIX6_ZIZPA)

HSP 1 Score: 67.4 bits (163), Expect = 5.440e-11
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 1
Query:   19 KVLIVGGGAGGIIAGREFLKRGREFCLFEENEELGGVWRYSPAFGYPAAPPESGEYS--SVVYEGLRTNLPKEIMRLSGVPFTGGAS------FPSHSKVL 297
            ++ +VGGGA G+ A REF + G    +FE    +GG W Y+     PAA    G  +  S +Y  LRTNLP+E+M     PF  GA       FP H +VL
Sbjct:    7 RLAVVGGGAAGLAAAREFRREGHSPVVFERAAAVGGTWLYAA----PAAADPLGAAATHSSLYASLRTNLPREVMGFIDFPFVAGAGSADPRRFPGHEEVL 103          
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Match: A0A6P4BE64_ZIZJJ (Flavin-containing monooxygenase n=5 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4BE64_ZIZJJ)

HSP 1 Score: 65.5 bits (158), Expect = 2.620e-10
Identity = 34/102 (33.33%), Postives = 50/102 (49.02%), Query Frame = 1
Query:   22 VLIVGGGAGGIIAGREFLKRGREFCLFEENEELGGVWRYSPAFGYP--AAPPESGEYSSVVYEGLRTNLPKEIMRLSGVPFT--------GGASFPSHSKVL 297
            V ++G GA G++A RE  + G    +FE+ +++GG W Y+P          P      S +Y+ LRTNLP+E+M     PF             FP H +VL
Sbjct:   26 VAVIGAGAAGLVAARELRREGHRVVVFEQGDQVGGTWVYTPKIESDPLGVDPRRTVVQSSLYQSLRTNLPREVMGFRDFPFVPRKDDKERDSRRFPGHREVL 127          
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Match: A0A8K0H9U2_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0H9U2_9ROSA)

HSP 1 Score: 65.1 bits (157), Expect = 3.580e-10
Identity = 34/102 (33.33%), Postives = 50/102 (49.02%), Query Frame = 1
Query:   22 VLIVGGGAGGIIAGREFLKRGREFCLFEENEELGGVWRYSPAFGYP--AAPPESGEYSSVVYEGLRTNLPKEIMRLSGVPFT--------GGASFPSHSKVL 297
            V ++G GA G++A RE  + G    +FE+ +++GG W Y+P          P      S +Y+ LRTNLP+E+M     PF             FP H +VL
Sbjct:   25 VAVIGAGAAGLVAARELRREGHNVVVFEQGDQVGGTWVYTPKIESDPLGLDPRRTVVQSSLYQSLRTNLPREVMGFRDYPFVPKKDYKDRDSRRFPGHREVL 126          
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Match: A0A1Y1HVH2_KLENI (Flavin-containing monooxygenase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HVH2_KLENI)

HSP 1 Score: 63.9 bits (154), Expect = 9.170e-10
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   22 VLIVGGGAGGIIAGREFLKRGREFCLFEENEELGGVWRYSP-AFGYPAAPPESGE-YSSVVYEGLRTNLPKEIMRLSGVPF 258
            V ++G GA G++A +E  + G +   FE+NE++GGVW+Y P     P    E  +   S +Y  LRTNLP+EIM  +  PF
Sbjct:   21 VCVIGAGAAGLVALKELREEGHQVTAFEQNEDIGGVWKYDPDTDDDPLGIREDRKKVHSSMYASLRTNLPREIMSFAAYPF 101          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109371.1954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0N4UEW2_DRAME4.590e-1447.87Flavin-containing monooxygenase n=1 Tax=Dracunculu... [more]
A0A087TJ86_STEMI4.430e-1240.59Flavin-containing monooxygenase FMO GS-OX-like 2 (... [more]
A0A1S3BKR3_CUCME1.570e-1135.29Flavin-containing monooxygenase n=3 Tax=Cucumis Ta... [more]
UPI0015A9DE322.130e-1137.62senecionine N-oxygenase-like n=1 Tax=Stegodyphus d... [more]
UPI0015BADC663.940e-1140.86NAD(P)-binding domain-containing protein n=1 Tax=F... [more]
A0A8J5WPK7_ZIZPA4.530e-1139.60Flavin-containing monooxygenase n=1 Tax=Zizania pa... [more]
A0A8J5WIX6_ZIZPA5.440e-1139.60Flavin-containing monooxygenase n=2 Tax=Zizania pa... [more]
A0A6P4BE64_ZIZJJ2.620e-1033.33Flavin-containing monooxygenase n=5 Tax=Ziziphus j... [more]
A0A8K0H9U2_9ROSA3.580e-1033.33Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A1Y1HVH2_KLENI9.170e-1040.74Flavin-containing monooxygenase n=1 Tax=Klebsormid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109371contigM-pyrifera_M_contig109371:309..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.3
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog4577.GRMZM2G423886_P01
KEGG koko:K22324
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004497,GO:0008150,GO:0008152,GO:0016491,GO:0055114
EggNOG free text desc.flavin-containing monooxygenase
EggNOG OGs37J7F@33090,3GFDB@35493,3ICP4@38820,3KNWG@4447,COG2072@1,KOG1399@2759
EC1.14.13.237
COG Functional cat.Q
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.7067173-CDS-M-pyrifera_M_contig109371:308..6051622815603.7067173-CDS-M-pyrifera_M_contig109371:308..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109371 309..605 +
1692277483.3148654-CDS-M-pyrifera_M_contig109371:308..6051692277483.3148654-CDS-M-pyrifera_M_contig109371:308..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109371 309..605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109371.1954.1prot_M-pyrifera_M_contig109371.1954.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109371 309..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109371.1954.1

>prot_M-pyrifera_M_contig109371.1954.1 ID=prot_M-pyrifera_M_contig109371.1954.1|Name=mRNA_M-pyrifera_M_contig109371.1954.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MSLKRGKVLIVGGGAGGIIAGREFLKRGREFCLFEENEELGGVWRYSPAF
GYPAAPPESGEYSSVVYEGLRTNLPKEIMRLSGVPFTGGASFPSHSKVL
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mRNA from alignment at M-pyrifera_M_contig109371:309..605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109371.1954.1 ID=mRNA_M-pyrifera_M_contig109371.1954.1|Name=mRNA_M-pyrifera_M_contig109371.1954.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig109371:309..605+ (Macrocystis pyrifera P11B4 male)
ATGAGCTTGAAACGAGGCAAAGTATTGATTGTGGGAGGAGGAGCTGGCGG AATCATCGCAGGGAGGGAGTTTTTGAAGCGTGGCAGAGAATTTTGCTTGT TTGAGGAGAATGAGGAGCTTGGTGGGGTATGGAGATATTCTCCTGCATTT GGATATCCTGCAGCACCTCCAGAGAGTGGGGAGTATAGCAGTGTGGTGTA TGAGGGGCTGCGAACAAACCTCCCGAAGGAAATTATGCGGCTTTCCGGAG TTCCTTTCACGGGTGGTGCTTCATTTCCGAGTCATTCGAAAGTATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109371:309..605+

>mRNA_M-pyrifera_M_contig109371.1954.1 ID=mRNA_M-pyrifera_M_contig109371.1954.1|Name=mRNA_M-pyrifera_M_contig109371.1954.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig109371:309..605+ (Macrocystis pyrifera P11B4 male)
ATGAGCTTGAAACGAGGCAAAGTATTGATTGTGGGAGGAGGAGCTGGCGG
AATCATCGCAGGGAGGGAGTTTTTGAAGCGTGGCAGAGAATTTTGCTTGT
TTGAGGAGAATGAGGAGCTTGGTGGGGTATGGAGATATTCTCCTGCATTT
GGATATCCTGCAGCACCTCCAGAGAGTGGGGAGTATAGCAGTGTGGTGTA
TGAGGGGCTGCGAACAAACCTCCCGAAGGAAATTATGCGGCTTTCCGGAG
TTCCTTTCACGGGTGGTGCTTCATTTCCGAGTCATTCGAAAGTATTGATG
AGCTTGAAACGAGGCAAAGTATTGATTGTGGGAGGAGGAGCTGGCGGAAT
CATCGCAGGGAGGGAGTTTTTGAAGCGTGGCAGAGAATTTTGCTTGTTTG
AGGAGAATGAGGAGCTTGGTGGGGTATGGAGATATTCTCCTGCATTTGGA
TATCCTGCAGCACCTCCAGAGAGTGGGGAGTATAGCAGTGTGGTGTATGA
GGGGCTGCGAACAAACCTCCCGAAGGAAATTATGCGGCTTTCCGGAGTTC
CTTTCACGGGTGGTGCTTCATTTCCGAGTCATTCGAAAGTATTG
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