mRNA_M-pyrifera_M_contig109363.1950.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109363.1950.1
Unique NamemRNA_M-pyrifera_M_contig109363.1950.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Match: A0A553NHD5_9TELE (SNCAIP_SNCA_bd domain-containing protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553NHD5_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 1.640e-8
Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 LQILLENGAELDMVDCDKNTALHIASLHGHPGCVEALLKFNADRTLVNASGAVPLHNATFIGNAACTK-LLCAEVCL 228
            LQ + E G  LD VD D +TA+H+A+  GH  C++ L+++ ++ T++N  G  P  NA   G++AC++ L+  E C+
Sbjct:  389 LQFMQEQGISLDEVDPDGSTAVHVAAQFGHLSCLQTLVEYGSNVTVLNLQGERPSQNAERQGHSACSRYLVVVESCM 465
[Close]
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Match: A0A1I8BL30_MELHA (Uncharacterized protein n=4 Tax=Meloidogyne TaxID=189290 RepID=A0A1I8BL30_MELHA)

HSP 1 Score: 52.4 bits (124), Expect = 4.640e-6
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 LQILLENGAELDMVDCDKNTALHIASLHGHPGCVEALLKFNADRTLVNASGAVPLHNA 174
            ++ LL NGA++++ D   NTALH+AS+ G+   V  LLK NA++T+ N  G +PL  A
Sbjct:  612 VEFLLLNGAKINICDWKGNTALHLASMEGYTIIVYQLLKRNAEKTIKNDEGKIPLDIA 669
[Close]
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Match: UPI00094E2202 (synphilin-1 isoform X1 n=3 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094E2202)

HSP 1 Score: 51.6 bits (122), Expect = 8.720e-6
Identity = 25/77 (32.47%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:    1 LQILLENGAELDMVDCDKNTALHIASLHGHPGCVEALLKFNADRTLVNASGAVPLHNATFIGNAACTK-LLCAEVCL 228
            LQ + E    LD VD + NT +H+A+ +GH  C++ L+++ ++ T++N  G  P   A   G++ C + L+  E C+
Sbjct:  478 LQFMQEQAISLDEVDHNGNTGVHVAAQYGHLTCIQTLVEYGSNVTVLNQQGERPSQLAERQGHSPCARYLVVVETCM 554
[Close]
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Match: A0A7S1IK05_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IK05_9EUGL)

HSP 1 Score: 51.2 bits (121), Expect = 1.170e-5
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:    1 LQILLENGAELDMVDCDKNTALHIASLHGHPGCVEALLKFNAD-RTLVNASGAVPLHNATFIGNAACTKLLCAE 219
            ++ L + GA+L+ VD  K TA+HIA+++GH   +  LL+  AD       SG   +H A   G A C + LCA 
Sbjct:  154 VEALADAGADLNAVDAQKLTAVHIAAINGHHRLLALLLRLGADFERRSGTSGNRAVHYAAMYGRATCLEALCAH 227
[Close]
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Match: A0A673FIS8_9TELE (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=6 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A673FIS8_9TELE)

HSP 1 Score: 51.2 bits (121), Expect = 1.200e-5
Identity = 26/65 (40.00%), Postives = 34/65 (52.31%), Query Frame = 1 
Query:   16 ENGAELDMVDCDKNTALHIASLHGHPGCVEALLKFNADRTLVNASGAVPLHNATFIGNAACTKLL 210
            + G E+D VD D NT LH+A  +GH   +  L+   AD T     G  PLH A    +AAC + L
Sbjct:  318 DTGGEIDCVDKDGNTPLHVAGRYGHELLINTLITSGADCTRRGVHGMFPLHLAALNAHAACCRKL 382
[Close]
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Match: A0A0T6AVS0_9SCAR (Phospholipase A(2) (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6AVS0_9SCAR)

HSP 1 Score: 50.8 bits (120), Expect = 1.620e-5
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:   10 LLENGAELDMVDCDKNTALHIASLHGHPGC--VEALLKFNADRTLVNASGAVPLH 168
            LL  GAE D+VDCD NTALH+A +  H     + +L+ F AD  ++N +G  P H
Sbjct:  332 LLSRGAETDLVDCDGNTALHLAIIQPHISIPILHSLIVFGADLNMLNNNGESPRH 386
[Close]
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Match: A0A075C6V4_SILOT (Uncharacterized protein (Fragment) n=1 Tax=Silene otites TaxID=42039 RepID=A0A075C6V4_SILOT)

HSP 1 Score: 46.6 bits (109), Expect = 2.850e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    4 QILLENGAELDMVDCDKNTALHIASLHGHPGCVEALLKFNA 126
            Q+LLENGA++D +D +KNTALH A+ +G   CV  LL+  A
Sbjct:    5 QVLLENGAKVDSLDKNKNTALHYAAGYGRKECVALLLESGA 45
[Close]
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Match: E3LK51_CAERE (BRCT domain-containing protein n=1 Tax=Caenorhabditis remanei TaxID=31234 RepID=E3LK51_CAERE)

HSP 1 Score: 50.1 bits (118), Expect = 3.020e-5
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   13 LENGAELDMVDCDKNTALHIASLHGHPGCVEALLKFNADRTLVNASGAVPLH 168
            L+NGA +D  +   NTALH+A+  GHP  VE L+K+ ADR+L+N     P+ 
Sbjct:  349 LKNGAYIDAYNKFGNTALHVATKLGHPEFVELLIKYGADRSLLNYKNLRPMQ 400
[Close]
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Match: A0A6A5GC79_CAERE (BRCT domain-containing protein n=1 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A6A5GC79_CAERE)

HSP 1 Score: 50.1 bits (118), Expect = 3.070e-5
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   13 LENGAELDMVDCDKNTALHIASLHGHPGCVEALLKFNADRTLVNASGAVPLH 168
            L+NGA +D  +   NTALH+A+  GHP  VE L+K+ ADR+L+N     P+ 
Sbjct:  770 LKNGAYIDAYNKFGNTALHVATKLGHPEFVELLIKYGADRSLLNYKNLRPMQ 821
[Close]
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Match: A0A2P4V2M0_CAERE (BRCT domain-containing protein n=1 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A2P4V2M0_CAERE)

HSP 1 Score: 50.1 bits (118), Expect = 3.090e-5
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   13 LENGAELDMVDCDKNTALHIASLHGHPGCVEALLKFNADRTLVNASGAVPLH 168
            L+NGA +D  +   NTALH+A+  GHP  VE L+K+ ADR+L+N     P+ 
Sbjct:  349 LKNGAYIDAYNKFGNTALHVATKLGHPEFVELLIKYGADRSLLNYKNLRPMQ 400
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109363.1950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A553NHD5_9TELE1.640e-837.66SNCAIP_SNCA_bd domain-containing protein n=1 Tax=D... [more]
A0A1I8BL30_MELHA4.640e-644.83Uncharacterized protein n=4 Tax=Meloidogyne TaxID=... [more]
UPI00094E22028.720e-632.47synphilin-1 isoform X1 n=3 Tax=Hippocampus comes T... [more]
A0A7S1IK05_9EUGL1.170e-537.84Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A673FIS8_9TELE1.200e-540.00Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A0T6AVS0_9SCAR1.620e-545.45Phospholipase A(2) (Fragment) n=1 Tax=Oryctes borb... [more]
A0A075C6V4_SILOT2.850e-553.66Uncharacterized protein (Fragment) n=1 Tax=Silene ... [more]
E3LK51_CAERE3.020e-546.15BRCT domain-containing protein n=1 Tax=Caenorhabdi... [more]
A0A6A5GC79_CAERE3.070e-546.15BRCT domain-containing protein n=1 Tax=Caenorhabdi... [more]
A0A2P4V2M0_CAERE3.090e-546.15BRCT domain-containing protein n=1 Tax=Caenorhabdi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109363contigM-pyrifera_M_contig109363:271..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score65.9
Seed ortholog evalue9.6e-09
Seed eggNOG ortholog1026970.XP_008838456.1
Preferred nameSNCAIP
KEGG koko:K04558
KEGG Pathwayko05012,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006584,GO:0006725,GO:0006807,GO:0008021,GO:0008150,GO:0008152,GO:0008219,GO:0009712,GO:0009987,GO:0010646,GO:0012505,GO:0016020,GO:0017144,GO:0018958,GO:0019538,GO:0019899,GO:0023051,GO:0030133,GO:0031410,GO:0031625,GO:0031974,GO:0031981,GO:0031982,GO:0032879,GO:0032991,GO:0035770,GO:0036464,GO:0036477,GO:0042417,GO:0042734,GO:0042802,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0045202,GO:0046928,GO:0050789,GO:0050794,GO:0050804,GO:0051046,GO:0051049,GO:0051128,GO:0051588,GO:0060341,GO:0065007,GO:0065008,GO:0070013,GO:0070382,GO:0071704,GO:0071944,GO:0090083,GO:0097060,GO:0097164,GO:0097458,GO:0097708,GO:0098590,GO:0098793,GO:0099177,GO:0099503,GO:1901360,GO:1901564,GO:1901615,GO:1903530,GO:1990904
EggNOG free text desc.Synphilin-1 alpha-Synuclein-binding domain
EggNOG OGs35NXA@314146,38DD7@33154,3BD36@33208,3D1T0@33213,3J4A6@40674,484TS@7711,494MS@7742,4PYJD@9989,COG0666@1,KOG0504@2759
COG Functional cat.S
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.533031-CDS-M-pyrifera_M_contig109363:270..4981622815603.533031-CDS-M-pyrifera_M_contig109363:270..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109363 271..498 -
1692277483.2338958-CDS-M-pyrifera_M_contig109363:270..4981692277483.2338958-CDS-M-pyrifera_M_contig109363:270..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109363 271..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109363.1950.1prot_M-pyrifera_M_contig109363.1950.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109363 271..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109363.1950.1

>prot_M-pyrifera_M_contig109363.1950.1 ID=prot_M-pyrifera_M_contig109363.1950.1|Name=mRNA_M-pyrifera_M_contig109363.1950.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
LQILLENGAELDMVDCDKNTALHIASLHGHPGCVEALLKFNADRTLVNAS
GAVPLHNATFIGNAACTKLLCAEVCL
back to top

mRNA from alignment at M-pyrifera_M_contig109363:271..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109363.1950.1 ID=mRNA_M-pyrifera_M_contig109363.1950.1|Name=mRNA_M-pyrifera_M_contig109363.1950.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig109363:271..498- (Macrocystis pyrifera P11B4 male)
TTGCAGATTCTGCTGGAGAACGGGGCTGAGCTGGACATGGTGGACTGTGA
CAAGAACACCGCGCTTCACATCGCGTCGCTCCATGGCCACCCCGGCTGCG
TTGAGGCTTTGCTGAAGTTCAACGCCGACCGCACTCTGGTCAATGCTTCT
GGCGCAGTGCCACTGCATAACGCCACCTTCATCGGCAATGCTGCCTGCAC
CAAGCTTCTCTGTGCTGAGGTTTGCCTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109363:271..498-

>mRNA_M-pyrifera_M_contig109363.1950.1 ID=mRNA_M-pyrifera_M_contig109363.1950.1|Name=mRNA_M-pyrifera_M_contig109363.1950.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig109363:271..498- (Macrocystis pyrifera P11B4 male)
TTGCAGATTCTGCTGGAGAACGGGGCTGAGCTGGACATGGTGGACTGTGA
CAAGAACACCGCGCTTCACATCGCGTCGCTCCATGGCCACCCCGGCTGCG
TTGAGGCTTTGCTGAAGTTCAACGCCGACCGCACTCTGGTCAATGCTTCT
GGCGCAGTGCCACTGCATAACGCCACCTTCATCGGCAATGCTGCCTGCAC
CAAGCTTCTCTGTGCTGAGGTTTGCCTTTTGCAGATTCTGCTGGAGAACG
GGGCTGAGCTGGACATGGTGGACTGTGACAAGAACACCGCGCTTCACATC
GCGTCGCTCCATGGCCACCCCGGCTGCGTTGAGGCTTTGCTGAAGTTCAA
CGCCGACCGCACTCTGGTCAATGCTTCTGGCGCAGTGCCACTGCATAACG
CCACCTTCATCGGCAATGCTGCCTGCACCAAGCTTCTCTGTGCTGAGGTT
TGCCTT
back to top