mRNA_M-pyrifera_M_contig109356.1949.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109356.1949.1
Unique NamemRNA_M-pyrifera_M_contig109356.1949.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Match: A0A2P6NMW5_9EUKA (Alcohol dehydrogenase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NMW5_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 3.410e-27
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 SEAAGVVVEVGSDV-THIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNFSFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK 297
            +EA+G V+EVG  V ++++ G +V + M+ GAM +EM+  A  C PKP  FS  EAA  FVGY TAY+GLVQRG L++GETLLVTGAGGGMG  AVQLGK
Sbjct:   70 TEASGTVIEVGPGVPSYLKPGVDVMIGMSTGAMGDEMITPALNCIPKPKEFSHVEAAGLFVGYSTAYNGLVQRGKLREGETLLVTGAGGGMGMAAVQLGK 169          
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Match: A0A812ZRG8_9DINO (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812ZRG8_9DINO)

HSP 1 Score: 108 bits (269), Expect = 3.590e-26
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    1 SEAAGVVVEVGSDVTHIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNFSFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK 297
            +E AGVV E GS V+ + VGD+V  A  GG  AEE+V+ A +C   P   SF++ A++ +GY T YHGLV RG LK GE LLVTGAGGGMGS+AV+LGK
Sbjct:   74 TEGAGVVAETGSKVSGLSVGDKVFYATMGGCAAEELVLPAQMCIKMPDTLSFSQGASFHMGYMTGYHGLVTRGRLKAGEWLLVTGAGGGMGSMAVELGK 172          
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Match: A0A323UL47_RHOPL (NADPH:quinone oxidoreductase family protein n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A323UL47_RHOPL)

HSP 1 Score: 107 bits (266), Expect = 7.080e-26
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    4 EAAGVVVEVGSDVTHIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNFSFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK 297
            EAAG V+E+G  VT +R GD V + +  GA AEE+VV AS   P P NF  AEAA Y  G+ TA+HGLV+RGGLK GE LLV GAGGG+G  AV+LGK
Sbjct:   65 EAAGEVIEIGEGVTGVRCGDRVIVKLRFGAYAEEVVVAASQLTPAPPNFDDAEAATYLAGHGTAWHGLVERGGLKAGEVLLVHGAGGGVGLAAVELGK 162          
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Match: A0A812Y1H0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Y1H0_9DINO)

HSP 1 Score: 108 bits (269), Expect = 2.570e-25
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    1 SEAAGVVVEVGSDVTHIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNFSFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK 297
            +E AGVV E GS V+ + VGD+V  A  GG  AEE+V+ A +C   P   SF++ A++ +GY T YHGLV RG LK GE LLVTGAGGGMGS+AV+LGK
Sbjct:   74 TEGAGVVAETGSKVSGLSVGDKVFYATMGGCAAEELVLPAQMCIKMPDTLSFSQGASFHMGYMTGYHGLVTRGRLKAGEWLLVTGAGGGMGSMAVELGK 172          
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Match: Q6N7S2_RHOPA (Putative oxidoreductase n=14 Tax=Proteobacteria TaxID=1224 RepID=Q6N7S2_RHOPA)

HSP 1 Score: 105 bits (262), Expect = 2.730e-25
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    4 EAAGVVVEVGSDVTHIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNFSFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK 297
            EAAG ++E+G+DVT +++GD V + +  GA AEE+V  AS   P P NF FAEAA Y  G+ TA+HGLV+RG L+ GE LLV GAGGG+G  AV++GK
Sbjct:   65 EAAGEIIELGADVTSVKLGDRVIVKLRFGAYAEEVVAAASQLTPAPANFDFAEAATYLAGHGTAWHGLVERGQLQPGEVLLVHGAGGGVGLAAVEVGK 162          
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Match: A0A1Q9C9L5_SYMMI (Quinone oxidoreductase-like protein 2-like n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C9L5_SYMMI)

HSP 1 Score: 108 bits (269), Expect = 2.780e-25
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    1 SEAAGVVVEVGSDVTHIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNFSFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK 297
            +E AGVV E GS V+ + VGD+V  A  GG  AEE+V+ A +C   P   SF++ A++ +GY T YHGLV RG LK GE LLVTGAGGGMGS+AV+LGK
Sbjct:  610 TEGAGVVAETGSKVSGLSVGDKVFYATMGGCAAEELVLPAQMCIKMPDTLSFSQGASFHMGYMTGYHGLVTRGRLKAGEWLLVTGAGGGMGSMAVELGK 708          
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Match: A0A813AU32_9DINO (GLYK protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AU32_9DINO)

HSP 1 Score: 108 bits (269), Expect = 2.840e-25
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    1 SEAAGVVVEVGSDVTHIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNFSFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK 297
            +E AGVV E GS V+ + VGD+V  A  GG  AEE+V+ A +C   P   SF++ A++ +GY T YHGLV RG LK GE LLVTGAGGGMGS+AV+LGK
Sbjct:  631 TEGAGVVAETGSKVSGLSVGDKVFYATMGGCAAEELVLPAQMCIKMPDTLSFSQGASFHMGYMTGYHGLVTRGRLKAGEWLLVTGAGGGMGSMAVELGK 729          
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Match: A0A813KD19_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KD19_POLGL)

HSP 1 Score: 102 bits (254), Expect = 4.730e-25
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    1 SEAAGVVVEVGSDVTHIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNFSFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK 297
            +E AGVV E+GS V+++R GD V  A   G   EE+V+ A VC   P   SF++ A +++GY T YH LV RG LK GE LLVTGAGGGMG++AV+LGK
Sbjct:   51 TEGAGVVKEIGSKVSNVRPGDRVMFATMQGCACEELVLPAQVCCRLPDPLSFSQGAGFYMGYTTGYHALVTRGRLKAGEWLLVTGAGGGMGTMAVELGK 149          
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Match: Q2IV57_RHOP2 (Alcohol dehydrogenase superfamily, zinc-containing n=3 Tax=Rhodopseudomonas TaxID=1073 RepID=Q2IV57_RHOP2)

HSP 1 Score: 102 bits (254), Expect = 4.030e-24
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    4 EAAGVVVEVGSDVTHIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNFSFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK 297
            EAAG V+E G  V+ +RVGD+V + +  GA A+E+ V AS   P P NF +AEAA Y  G+ TA+HGLV RG LKKGE LLV GA GG+G  AV+LGK
Sbjct:   65 EAAGDVIETGEGVSDVRVGDKVIVKLRFGAYAQEVAVAASQLTPMPPNFDYAEAATYLAGHGTAWHGLVDRGQLKKGEVLLVHGAAGGVGLAAVELGK 162          
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Match: A0A5B7SRL4_9FLAO (NADPH:quinone oxidoreductase family protein n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A5B7SRL4_9FLAO)

HSP 1 Score: 102 bits (254), Expect = 4.030e-24
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 SEAAGVVVEVGSDVTHIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNFSFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK 297
            S+ AG+V EVG +VTH++VG EV   +A GA+AEE+VV A+ CFPKP    F  AA++ + Y T+YH L  R  L +GETLLV GA GG+G  AV+LGK
Sbjct:   63 SDVAGIVKEVGEEVTHLKVGQEVFGFVAYGALAEEVVVPANACFPKPPQMDFPTAASFLMAYGTSYHALKDRAHLAEGETLLVLGASGGVGIAAVELGK 161          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109356.1949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6NMW5_9EUKA3.410e-2760.00Alcohol dehydrogenase n=1 Tax=Planoprotostelium fu... [more]
A0A812ZRG8_9DINO3.590e-2657.58Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A323UL47_RHOPL7.080e-2660.20NADPH:quinone oxidoreductase family protein n=1 Ta... [more]
A0A812Y1H0_9DINO2.570e-2557.58Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
Q6N7S2_RHOPA2.730e-2556.12Putative oxidoreductase n=14 Tax=Proteobacteria Ta... [more]
A0A1Q9C9L5_SYMMI2.780e-2557.58Quinone oxidoreductase-like protein 2-like n=2 Tax... [more]
A0A813AU32_9DINO2.840e-2557.58GLYK protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A813KD19_POLGL4.730e-2554.55Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
Q2IV57_RHOP24.030e-2457.14Alcohol dehydrogenase superfamily, zinc-containing... [more]
A0A5B7SRL4_9FLAO4.030e-2454.55NADPH:quinone oxidoreductase family protein n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109356contigM-pyrifera_M_contig109356:126..422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score106.7
Seed ortholog evalue6.4e-21
Seed eggNOG ortholog258594.RPA2184
Preferred nameMA20_32380
KEGG koko:K00344
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc-binding dehydrogenase
EggNOG OGs1MWRK@1224,2TQMF@28211,3JU48@41294,COG0604@1,COG0604@2
EC1.6.5.5
COG Functional cat.C
Best tax levelBradyrhizobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.4874246-CDS-M-pyrifera_M_contig109356:125..4221622815603.4874246-CDS-M-pyrifera_M_contig109356:125..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109356 126..422 +
1692277483.2232947-CDS-M-pyrifera_M_contig109356:125..4221692277483.2232947-CDS-M-pyrifera_M_contig109356:125..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109356 126..422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109356.1949.1prot_M-pyrifera_M_contig109356.1949.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109356 126..422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109356.1949.1

>prot_M-pyrifera_M_contig109356.1949.1 ID=prot_M-pyrifera_M_contig109356.1949.1|Name=mRNA_M-pyrifera_M_contig109356.1949.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
SEAAGVVVEVGSDVTHIRVGDEVAMAMAGGAMAEEMVVEASVCFPKPWNF
SFAEAAAYFVGYCTAYHGLVQRGGLKKGETLLVTGAGGGMGSIAVQLGK
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mRNA from alignment at M-pyrifera_M_contig109356:126..422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109356.1949.1 ID=mRNA_M-pyrifera_M_contig109356.1949.1|Name=mRNA_M-pyrifera_M_contig109356.1949.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig109356:126..422+ (Macrocystis pyrifera P11B4 male)
AGTGAGGCGGCAGGAGTCGTCGTGGAGGTGGGCAGTGATGTGACGCACAT TCGTGTGGGCGACGAGGTCGCCATGGCAATGGCTGGCGGTGCCATGGCGG AGGAGATGGTCGTGGAGGCCAGCGTTTGCTTCCCCAAGCCTTGGAACTTC TCCTTTGCCGAGGCAGCAGCCTACTTCGTGGGCTACTGCACCGCTTACCA TGGCCTCGTGCAACGTGGGGGTCTCAAGAAAGGAGAGACGTTGCTCGTCA CCGGTGCGGGAGGTGGCATGGGCTCCATTGCGGTGCAGCTTGGAAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109356:126..422+

>mRNA_M-pyrifera_M_contig109356.1949.1 ID=mRNA_M-pyrifera_M_contig109356.1949.1|Name=mRNA_M-pyrifera_M_contig109356.1949.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig109356:126..422+ (Macrocystis pyrifera P11B4 male)
AGTGAGGCGGCAGGAGTCGTCGTGGAGGTGGGCAGTGATGTGACGCACAT
TCGTGTGGGCGACGAGGTCGCCATGGCAATGGCTGGCGGTGCCATGGCGG
AGGAGATGGTCGTGGAGGCCAGCGTTTGCTTCCCCAAGCCTTGGAACTTC
TCCTTTGCCGAGGCAGCAGCCTACTTCGTGGGCTACTGCACCGCTTACCA
TGGCCTCGTGCAACGTGGGGGTCTCAAGAAAGGAGAGACGTTGCTCGTCA
CCGGTGCGGGAGGTGGCATGGGCTCCATTGCGGTGCAGCTTGGAAAGAGT
GAGGCGGCAGGAGTCGTCGTGGAGGTGGGCAGTGATGTGACGCACATTCG
TGTGGGCGACGAGGTCGCCATGGCAATGGCTGGCGGTGCCATGGCGGAGG
AGATGGTCGTGGAGGCCAGCGTTTGCTTCCCCAAGCCTTGGAACTTCTCC
TTTGCCGAGGCAGCAGCCTACTTCGTGGGCTACTGCACCGCTTACCATGG
CCTCGTGCAACGTGGGGGTCTCAAGAAAGGAGAGACGTTGCTCGTCACCG
GTGCGGGAGGTGGCATGGGCTCCATTGCGGTGCAGCTTGGAAAG
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