mRNA_M-pyrifera_M_contig109311.1944.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109311.1944.1
Unique NamemRNA_M-pyrifera_M_contig109311.1944.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109311.1944.1 vs. uniprot
Match: D7FSU7_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU7_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.550e-16
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 LLSQGLDSHRHSAAHFEDTARRKGLQLICIDRPGRGLSDPIP-PAV-ADVGEE 153
             L  GLDSHRHSAAHFED ARR+GLQLICIDRPGRG SDPIP P V A+ G E
Sbjct:  208 FLFLGLDSHRHSAAHFEDIARRRGLQLICIDRPGRGRSDPIPVPEVDAEAGAE 260
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BLAST of mRNA_M-pyrifera_M_contig109311.1944.1 vs. uniprot
Match: T0R0W9_SAPDV (AB hydrolase-1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R0W9_SAPDV)

HSP 1 Score: 55.8 bits (133), Expect = 9.110e-8
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 LLSQGLDSHRHSAAHFEDTARRKGLQLICIDRPGRGLSDPIP 126
            LL  G+  HRH+    E  AR++GL+L+CIDRPG GLS P+P
Sbjct:   37 LLFLGMHGHRHATVLVEAVARQRGLRLLCIDRPGYGLSSPLP 78
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BLAST of mRNA_M-pyrifera_M_contig109311.1944.1 vs. uniprot
Match: A0A7S3YHK9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHK9_HETAK)

HSP 1 Score: 51.6 bits (122), Expect = 2.100e-6
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    1 LLSQGLDSHRHSAAHFEDTARRKGLQLICIDRPGRGLSDPIPPAVADVGE 150
            L   G+DSHR++A   ED A    ++LICIDRPGRGLS  + P +  + E
Sbjct:  105 LAFLGVDSHRYAAILLEDLALEHKIRLICIDRPGRGLSSNLEPKLNRIKE 154
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BLAST of mRNA_M-pyrifera_M_contig109311.1944.1 vs. uniprot
Match: A0A1V9Z8R8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8R8_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.930e-5
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:   13 GLDSHRHSAAHFEDTARRKGLQLICIDRPGRGLSDPI 123
            G+  HRH    F++ A   GL+L+C+DRPG GLSDP+
Sbjct:  601 GMRGHRHFVYLFKELAYAYGLRLVCVDRPGYGLSDPL 637
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BLAST of mRNA_M-pyrifera_M_contig109311.1944.1 vs. uniprot
Match: UPI00037E8193 (alpha/beta hydrolase n=1 Tax=Actinoplanes globisporus TaxID=113565 RepID=UPI00037E8193)

HSP 1 Score: 48.1 bits (113), Expect = 5.180e-5
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 LLSQGLDSHRHSAAHFEDTARRKGLQLICIDRPGRGLSDPIPPAVADVGEES 156
            L   G  + RH A   E  ARR+G++LI ++RPG G +   PP++A VG ++
Sbjct:   33 LFHHGTPASRHQAGLVEAAARRQGVRLISVNRPGYGAAADTPPSLASVGADT 84
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BLAST of mRNA_M-pyrifera_M_contig109311.1944.1 vs. uniprot
Match: A0A067BF13_SAPPC (AB hydrolase-1 domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BF13_SAPPC)

HSP 1 Score: 47.8 bits (112), Expect = 7.190e-5
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:   13 GLDSHRHSAAHFEDTARRKGLQLICIDRPGRGLSDPI 123
            G+  HRH    F++ A   G++L+CIDRPG GLSDPI
Sbjct:   41 GMRGHRHFIYLFKELALLYGIRLLCIDRPGYGLSDPI 77
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BLAST of mRNA_M-pyrifera_M_contig109311.1944.1 vs. uniprot
Match: A0A485L2T6_9STRA (Aste57867_15173 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2T6_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.240e-5
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 1 
Query:    1 LLSQGLDSHRHSAAHFEDTARRKGLQLICIDRPGRGLSDPI 123
            L   G+  HR+ +  F   A R G++LICIDRPG GLSD +
Sbjct:   45 LFLLGMQGHRYHSFLFSTLAHRHGIRLICIDRPGYGLSDDV 85
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109311.1944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FSU7_ECTSI1.550e-1677.36FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
T0R0W9_SAPDV9.110e-854.76AB hydrolase-1 domain-containing protein n=1 Tax=S... [more]
A0A7S3YHK9_HETAK2.100e-648.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9Z8R8_9STRA3.930e-551.35Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
UPI00037E81935.180e-540.38alpha/beta hydrolase n=1 Tax=Actinoplanes globispo... [more]
A0A067BF13_SAPPC7.190e-554.05AB hydrolase-1 domain-containing protein n=3 Tax=S... [more]
A0A485L2T6_9STRA7.240e-548.78Aste57867_15173 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109311contigM-pyrifera_M_contig109311:160..315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue3.4e-13
Seed eggNOG ortholog2880.D7FSU7
KEGG koko:K12492
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.1974108-CDS-M-pyrifera_M_contig109311:159..3151622815603.1974108-CDS-M-pyrifera_M_contig109311:159..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109311 160..315 +
1692277483.1055486-CDS-M-pyrifera_M_contig109311:159..3151692277483.1055486-CDS-M-pyrifera_M_contig109311:159..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109311 160..315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109311.1944.1prot_M-pyrifera_M_contig109311.1944.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109311 160..315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109311.1944.1

>prot_M-pyrifera_M_contig109311.1944.1 ID=prot_M-pyrifera_M_contig109311.1944.1|Name=mRNA_M-pyrifera_M_contig109311.1944.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
LLSQGLDSHRHSAAHFEDTARRKGLQLICIDRPGRGLSDPIPPAVADVGE
ES
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mRNA from alignment at M-pyrifera_M_contig109311:160..315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109311.1944.1 ID=mRNA_M-pyrifera_M_contig109311.1944.1|Name=mRNA_M-pyrifera_M_contig109311.1944.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig109311:160..315+ (Macrocystis pyrifera P11B4 male)
CTCTTGTCACAGGGATTGGACTCCCACCGCCACTCCGCGGCGCACTTCGA
GGACACCGCTCGCCGGAAAGGTCTGCAGCTCATCTGCATCGACCGGCCGG
GGAGGGGACTCTCCGATCCTATCCCCCCTGCGGTGGCCGACGTCGGCGAA
GAAAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109311:160..315+

>mRNA_M-pyrifera_M_contig109311.1944.1 ID=mRNA_M-pyrifera_M_contig109311.1944.1|Name=mRNA_M-pyrifera_M_contig109311.1944.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig109311:160..315+ (Macrocystis pyrifera P11B4 male)
CTCTTGTCACAGGGATTGGACTCCCACCGCCACTCCGCGGCGCACTTCGA
GGACACCGCTCGCCGGAAAGGTCTGCAGCTCATCTGCATCGACCGGCCGG
GGAGGGGACTCTCCGATCCTATCCCCCCTGCGGTGGCCGACGTCGGCGAA
GAAAGCCTCTTGTCACAGGGATTGGACTCCCACCGCCACTCCGCGGCGCA
CTTCGAGGACACCGCTCGCCGGAAAGGTCTGCAGCTCATCTGCATCGACC
GGCCGGGGAGGGGACTCTCCGATCCTATCCCCCCTGCGGTGGCCGACGTC
GGCGAAGAAAGC
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