mRNA_M-pyrifera_M_contig109250.1930.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109250.1930.1
Unique NamemRNA_M-pyrifera_M_contig109250.1930.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Match: A0A2E1VQH7_9BACT (Endonuclease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VQH7_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 5.800e-22
Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   10 WAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWELRVVYGPYADRSAAQIAEAEVKRLSGAARFAFDA-PQLPA 267
            W  Y+L S    RTYVG++ D  RR+ QHNGE + GAR+TRAGRPW+L  + GPYADR  AQ AEA  KRLS   R A  + P LPA
Sbjct:    4 WYAYLLRSDSAARTYVGVSTDPDRRLAQHNGERVGGARSTRAGRPWQLAAIRGPYADRGEAQRAEAAWKRLSHTERLASCSDPSLPA 90          
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Match: A0A356T5H3_9DELT (Endonuclease n=2 Tax=Myxococcales TaxID=29 RepID=A0A356T5H3_9DELT)

HSP 1 Score: 86.3 bits (212), Expect = 2.860e-20
Identity = 45/77 (58.44%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   10 WAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWELRVVYGPYADRSAAQIAEAEVKRLSGAARF 240
            W VYVL SA   RTYVGI  DV RR+RQHNG L+ GAR+TRAGRPW +    GP+  R  A   EAE+KRL G  R 
Sbjct:    7 WWVYVLLSADGARTYVGITTDVARRLRQHNGALVGGARSTRAGRPWTVAARRGPFESRGDASRREAEIKRLRGRRRL 83          
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Match: A0A2E7RHP1_9BACT (GIY-YIG domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E7RHP1_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 2.880e-20
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   10 WAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWELRVVYGPYADRSAAQIAEAEVKRLSGAARF 240
            W +Y+L SA  + TYVGI+ +V RR+R HNGE+  GA+ TRAGRPW L  V GPY +R+ AQ AE E K+L G  R 
Sbjct:   12 WTLYILLSAEGDSTYVGISTNVERRLRAHNGEIAGGAKRTRAGRPWRLGAVVGPYPNRATAQTAEYEAKQLRGQERI 88          
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Match: A0A2E7UQQ9_9DELT (GIY-YIG domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7UQQ9_9DELT)

HSP 1 Score: 82.0 bits (201), Expect = 1.630e-18
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 APGWAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWELRVVYGPYADRSAAQIAEAEVKRLSGAARFAFDAP 255
            A  W VY+L S RL R+Y+GIA +V RR+RQHNG+L  GAR+TR+GRPW +    GP+ DRS A   E   K++ G  R  ++ P
Sbjct:    5 ASEWWVYLLQSTRLRRSYIGIAINVDRRLRQHNGDLAGGARSTRSGRPWTVARRLGPFPDRSTASRVEYAWKQVRGRQRLYWNPP 89          
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Match: A0A7Y2CHP5_9BACT (GIY-YIG nuclease family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y2CHP5_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 5.040e-18
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   10 WAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWELRVVYGPYADRSAAQIAEAEVK 216
            W VYVL S R+ RTYVG+  D  RR+ +HNGE   GA++TRAGRPW +  +YGPY ++S AQ AE +V+
Sbjct:    3 WWVYVLRSERIRRTYVGVTTDPERRLAEHNGEKPGGAKSTRAGRPWGVAALYGPYKNQSEAQTAEHDVR 71          
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Match: A0A0D9XWU2_9ORYZ (GIY-YIG domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XWU2_9ORYZ)

HSP 1 Score: 78.6 bits (192), Expect = 2.170e-16
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 APGWAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWELRVVYGPYADRSAAQIAEAEVKRLS 225
            A GW VY++ S+R+ RTYVG++ D PRR+RQHNGEL  GA+A+ AGRPW L  +   + +RS A   E++ K +S
Sbjct:   47 ASGWCVYLIASSRIPRTYVGVSTDFPRRLRQHNGELKGGAKASSAGRPWNLACLIEGFVNRSEACEFESKWKNIS 121          
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Match: B8BM08_ORYSI (GIY-YIG domain-containing protein n=6 Tax=Oryza TaxID=4527 RepID=B8BM08_ORYSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.430e-16
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 APGWAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWELRVVYGPYADRSAAQIAEAEVKRLS 225
            A GW VY++ S+R+ RTYVG+  D PRR+RQHNGEL  GA+A+ AGRPW L  +   + +RS A   E++ K +S
Sbjct:   48 ALGWCVYLIASSRISRTYVGVTTDFPRRLRQHNGELKGGAKASSAGRPWNLACLIEGFVNRSEACEFESKWKNIS 122          
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Match: A0A7C7H6L3_9BACT (GIY-YIG nuclease family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C7H6L3_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 6.700e-16
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 APGWAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWELRVVYGPYADRSAAQIAEAEVKRLSGAARFAF 246
            A  W VY+L S    RTYVG+  D+ +R+ QHNG+L+ GA++TRAGRPW +R        RS AQ  EA++K LS   R  +
Sbjct:   15 AKKWTVYILISRDHSRTYVGVCLDITKRLAQHNGDLVGGAKSTRAGRPWCVRKKIENITSRSEAQALEAQIKLLSRRERLTY 96          
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Match: A0A0E0BF86_9ORYZ (GIY-YIG domain-containing protein n=2 Tax=Oryza glumipatula TaxID=40148 RepID=A0A0E0BF86_9ORYZ)

HSP 1 Score: 78.2 bits (191), Expect = 7.040e-16
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 APGWAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWELRVVYGPYADRSAAQIAEAEVKRLS 225
            A GW VY++ S+R+ RTYVG+  D PRR+RQHNGEL  GA+A+ AGRPW L  +   + +RS A   E++ K +S
Sbjct:   87 ASGWCVYLIASSRIPRTYVGVTTDFPRRLRQHNGELKGGAKASSAGRPWNLACLIEGFVNRSEACEFESKWKNIS 161          
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Match: A0A0E0RDN7_ORYRU (GIY-YIG domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0RDN7_ORYRU)

HSP 1 Score: 77.8 bits (190), Expect = 7.240e-16
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 APGWAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWELRVVYGPYADRSAAQIAEAEVKRLS 225
            A GW VY++ S+R+ RTYVG+  D PRR+RQHNGEL  GA+A+ AGRPW L  +   + +RS A   E++ K +S
Sbjct:   48 ALGWCVYLIASSRISRTYVGVTTDFPRRLRQHNGELKGGAKASSAGRPWNLACLIEGFVNRSEACEFESKWKNIS 122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109250.1930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E1VQH7_9BACT5.800e-2256.32Endonuclease n=1 Tax=Planctomycetes bacterium TaxI... [more]
A0A356T5H3_9DELT2.860e-2058.44Endonuclease n=2 Tax=Myxococcales TaxID=29 RepID=A... [more]
A0A2E7RHP1_9BACT2.880e-2054.55GIY-YIG domain-containing protein n=1 Tax=Planctom... [more]
A0A2E7UQQ9_9DELT1.630e-1849.41GIY-YIG domain-containing protein n=1 Tax=Deltapro... [more]
A0A7Y2CHP5_9BACT5.040e-1855.07GIY-YIG nuclease family protein n=1 Tax=Gemmatimon... [more]
A0A0D9XWU2_9ORYZ2.170e-1650.67GIY-YIG domain-containing protein n=1 Tax=Leersia ... [more]
B8BM08_ORYSI4.430e-1650.67GIY-YIG domain-containing protein n=6 Tax=Oryza Ta... [more]
A0A7C7H6L3_9BACT6.700e-1646.34GIY-YIG nuclease family protein n=1 Tax=Planctomyc... [more]
A0A0E0BF86_9ORYZ7.040e-1650.67GIY-YIG domain-containing protein n=2 Tax=Oryza gl... [more]
A0A0E0RDN7_ORYRU7.240e-1650.67GIY-YIG domain-containing protein n=2 Tax=Oryza Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109250contigM-pyrifera_M_contig109250:119..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score78.6
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog77586.LPERR12G02590.1
KEGG koko:K15078
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GIY-YIG catalytic domain
EggNOG OGs37VFK@33090,3GJB3@35493,3IHCB@38820,3KZ7Z@4447,KOG3005@1,KOG3005@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.3513415-CDS-M-pyrifera_M_contig109250:118..3911622815602.3513415-CDS-M-pyrifera_M_contig109250:118..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109250 119..391 +
1692277482.7327912-CDS-M-pyrifera_M_contig109250:118..3911692277482.7327912-CDS-M-pyrifera_M_contig109250:118..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109250 119..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109250.1930.1prot_M-pyrifera_M_contig109250.1930.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109250 119..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109250.1930.1

>prot_M-pyrifera_M_contig109250.1930.1 ID=prot_M-pyrifera_M_contig109250.1930.1|Name=mRNA_M-pyrifera_M_contig109250.1930.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
APGWAVYVLWSARLERTYVGIAQDVPRRVRQHNGELIRGARATRAGRPWE
LRVVYGPYADRSAAQIAEAEVKRLSGAARFAFDAPQLPAN*
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mRNA from alignment at M-pyrifera_M_contig109250:119..391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109250.1930.1 ID=mRNA_M-pyrifera_M_contig109250.1930.1|Name=mRNA_M-pyrifera_M_contig109250.1930.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig109250:119..391+ (Macrocystis pyrifera P11B4 male)
GCCCCCGGCTGGGCCGTGTACGTGCTGTGGAGCGCGCGCCTCGAGCGCAC GTACGTCGGCATCGCCCAGGACGTTCCACGCCGCGTGCGCCAGCACAACG GCGAGCTGATCCGCGGCGCGCGCGCGACCCGCGCCGGCCGCCCCTGGGAG CTGCGCGTCGTGTATGGCCCCTACGCCGACCGCAGCGCGGCGCAGATCGC GGAGGCCGAGGTCAAGCGCTTGAGCGGCGCGGCGCGCTTCGCCTTCGACG CACCGCAGCTGCCTGCGAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109250:119..391+

>mRNA_M-pyrifera_M_contig109250.1930.1 ID=mRNA_M-pyrifera_M_contig109250.1930.1|Name=mRNA_M-pyrifera_M_contig109250.1930.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig109250:119..391+ (Macrocystis pyrifera P11B4 male)
GCCCCCGGCTGGGCCGTGTACGTGCTGTGGAGCGCGCGCCTCGAGCGCAC
GTACGTCGGCATCGCCCAGGACGTTCCACGCCGCGTGCGCCAGCACAACG
GCGAGCTGATCCGCGGCGCGCGCGCGACCCGCGCCGGCCGCCCCTGGGAG
CTGCGCGTCGTGTATGGCCCCTACGCCGACCGCAGCGCGGCGCAGATCGC
GGAGGCCGAGGTCAAGCGCTTGAGCGGCGCGGCGCGCTTCGCCTTCGACG
CACCGCAGCTGCCTGCGAACTGAGCCCCCGGCTGGGCCGTGTACGTGCTG
TGGAGCGCGCGCCTCGAGCGCACGTACGTCGGCATCGCCCAGGACGTTCC
ACGCCGCGTGCGCCAGCACAACGGCGAGCTGATCCGCGGCGCGCGCGCGA
CCCGCGCCGGCCGCCCCTGGGAGCTGCGCGTCGTGTATGGCCCCTACGCC
GACCGCAGCGCGGCGCAGATCGCGGAGGCCGAGGTCAAGCGCTTGAGCGG
CGCGGCGCGCTTCGCCTTCGACGCACCGCAGCTGCCTGCGAACTGA
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