mRNA_M-pyrifera_M_contig108953.1874.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108953.1874.1
Unique NamemRNA_M-pyrifera_M_contig108953.1874.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108953.1874.1 vs. uniprot
Match: A0A8H4AUA6_GIGMA (tRNA uridine 5-carboxymethylaminomethyl modification enzyme n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4AUA6_GIGMA)

HSP 1 Score: 48.9 bits (115), Expect = 2.730e-5
Identity = 17/38 (44.74%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   19 CVECGVRVAVWTCDQCGDDYCRSCFASLHRSGRRALHT 132
            CVEC  + +++ C+QC +++C  CFA +HR+G R +HT
Sbjct:  256 CVECRDQDSLFFCEQCNEEFCEVCFAMIHRTGSRRIHT 293
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BLAST of mRNA_M-pyrifera_M_contig108953.1874.1 vs. uniprot
Match: A0A8H4EQB6_GIGMA (tRNA uridine 5-carboxymethylaminomethyl modification enzyme n=3 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4EQB6_GIGMA)

HSP 1 Score: 48.9 bits (115), Expect = 2.750e-5
Identity = 17/38 (44.74%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   19 CVECGVRVAVWTCDQCGDDYCRSCFASLHRSGRRALHT 132
            CVEC  + +++ C+QC +++C  CFA +HR+G R +HT
Sbjct:  256 CVECRDQDSLFFCEQCNEEFCEVCFAMIHRTGSRRIHT 293
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BLAST of mRNA_M-pyrifera_M_contig108953.1874.1 vs. uniprot
Match: D3B3Y9_POLPP (B box-type domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B3Y9_POLPP)

HSP 1 Score: 48.5 bits (114), Expect = 3.760e-5
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   19 CVECGVRVAVWTCDQCGDDYCRSCFASLHRSGRRALHTWS 138
            CVEC  + A   CDQC DD C  C  S+HR G+R LHT++
Sbjct:  123 CVECTDQPASIHCDQCQDDLCEVCGYSIHRRGKRKLHTYT 162
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BLAST of mRNA_M-pyrifera_M_contig108953.1874.1 vs. uniprot
Match: A0A8D0EFZ3_9SAUR (B box-type domain-containing protein n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0EFZ3_9SAUR)

HSP 1 Score: 47.8 bits (112), Expect = 7.040e-5
Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 1 
Query:   19 CVECGVRVAVWTCDQCGDDYCRSCFASLHRSGRRALH 129
            C +C ++ A+  C +CG+DYC SCFAS+H+ G    H
Sbjct:  137 CGQCEIKTALLVCLECGEDYCPSCFASMHQKGALKFH 173
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BLAST of mRNA_M-pyrifera_M_contig108953.1874.1 vs. uniprot
Match: A0A482V1V8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V1V8_9ARCH)

HSP 1 Score: 47.8 bits (112), Expect = 7.050e-5
Identity = 19/44 (43.18%), Postives = 25/44 (56.82%), Query Frame = 1 
Query:   19 CVECGVRVAVWTCDQCGDDYCRSCFASLHRSGRRALHTWSVYRP 150
            C EC  RVA+ TC++CGD +C  C+  LH  G R  H  +   P
Sbjct:  860 CTECNERVAIVTCEECGDIFCTKCYKFLHALGARRSHHHTPLGP 903
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108953.1874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A8H4AUA6_GIGMA2.730e-544.74tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
A0A8H4EQB6_GIGMA2.750e-544.74tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
D3B3Y9_POLPP3.760e-552.50B box-type domain-containing protein n=1 Tax=Polys... [more]
A0A8D0EFZ3_9SAUR7.040e-545.95B box-type domain-containing protein n=1 Tax=Salva... [more]
A0A482V1V8_9ARCH7.050e-543.18Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108953contigM-pyrifera_M_contig108953:41..193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.361969-CDS-M-pyrifera_M_contig108953:40..1931622815599.361969-CDS-M-pyrifera_M_contig108953:40..193Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108953 41..193 -
1692277481.41442-CDS-M-pyrifera_M_contig108953:40..1931692277481.41442-CDS-M-pyrifera_M_contig108953:40..193Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108953 41..193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108953.1874.1prot_M-pyrifera_M_contig108953.1874.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108953 41..193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108953.1874.1

>prot_M-pyrifera_M_contig108953.1874.1 ID=prot_M-pyrifera_M_contig108953.1874.1|Name=mRNA_M-pyrifera_M_contig108953.1874.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
GEGRTQCVECGVRVAVWTCDQCGDDYCRSCFASLHRSGRRALHTWSVYRP
L
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mRNA from alignment at M-pyrifera_M_contig108953:41..193-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108953.1874.1 ID=mRNA_M-pyrifera_M_contig108953.1874.1|Name=mRNA_M-pyrifera_M_contig108953.1874.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig108953:41..193- (Macrocystis pyrifera P11B4 male)
GGGGAGGGGCGCACGCAGTGCGTGGAGTGTGGTGTTCGCGTCGCGGTGTG
GACGTGCGATCAGTGCGGCGACGACTACTGCAGGTCCTGTTTTGCTTCGC
TCCACCGCAGCGGCAGGCGCGCGCTGCACACCTGGTCGGTGTACCGGCCG
CTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108953:41..193-

>mRNA_M-pyrifera_M_contig108953.1874.1 ID=mRNA_M-pyrifera_M_contig108953.1874.1|Name=mRNA_M-pyrifera_M_contig108953.1874.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig108953:41..193- (Macrocystis pyrifera P11B4 male)
GGGGAGGGGCGCACGCAGTGCGTGGAGTGTGGTGTTCGCGTCGCGGTGTG
GACGTGCGATCAGTGCGGCGACGACTACTGCAGGTCCTGTTTTGCTTCGC
TCCACCGCAGCGGCAGGCGCGCGCTGCACACCTGGTCGGTGTACCGGCCG
CTGGGGGAGGGGCGCACGCAGTGCGTGGAGTGTGGTGTTCGCGTCGCGGT
GTGGACGTGCGATCAGTGCGGCGACGACTACTGCAGGTCCTGTTTTGCTT
CGCTCCACCGCAGCGGCAGGCGCGCGCTGCACACCTGGTCGGTGTACCGG
CCGCTG
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