mRNA_M-pyrifera_M_contig108876.1863.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108876.1863.1
Unique NamemRNA_M-pyrifera_M_contig108876.1863.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig108876.1863.1 vs. uniprot
Match: UPI001187CA2B (redoxin domain-containing protein n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=UPI001187CA2B)

HSP 1 Score: 144 bits (362), Expect = 6.570e-37
Identity = 66/117 (56.41%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:    4 DRHKKHFDYRRDWDWKPAGLAQGHVTIPADAKVKLTLRADGARDMSWVKKLQPDDFYEVFIYPHPANANSYPFGDAHAKHLGHFSGLRNLALGYVQVTDQGMQHLESMTSLEFLSIY 354
            D++ K FDYRRDWDWK    AQG VT+PA A VKL L+  GA +MSWV++L+PDD YE  +YPH ++ N + FGDA  +HLGH +GLR L L YVQVT +G++ L  + SLE L+IY
Sbjct:  418 DQYSKAFDYRRDWDWKYTRQAQGDVTVPAGAVVKLNLKQPGAGNMSWVERLEPDDIYEFRVYPHASSPNPFKFGDAQVRHLGHLTGLRELELNYVQVTGRGLRALAPLQSLEKLTIY 534
[Close]
BLAST of mRNA_M-pyrifera_M_contig108876.1863.1 vs. uniprot
Match: A0A517ZN01_9PLAN (Thiol-disulfide oxidoreductase ResA n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZN01_9PLAN)

HSP 1 Score: 139 bits (349), Expect = 3.690e-35
Identity = 67/150 (44.67%), Postives = 85/150 (56.67%), Query Frame = 1 
Query:    4 DRHKKHFDYRRDWDWKPAGLAQGHVTIPADAKVKLTLRADGARDMSWVKKLQPDDFYEVFIYPHPANANSYPFGDAHAKHLGHFSGLRNLALGYVQVTDQGMQHLESMTSLEFLSIYXXXXXXXXXXXXXXXXXXXRLELSKMKWTDIGV 453
            D + K FDYRRDWDWK  G AQG V IP  A+VKL ++  GA + SW+  L PDD YEVF+YP P N +SY FG+A A+HLGH +GL  L + Y  VT  G++ L+ +  LE L  +                    L L K KW D G+
Sbjct:  418 DTYFKRFDYRRDWDWKYLGQAQGAVEIPPGAQVKLEIKKAGAANTSWITNLHPDDLYEVFVYPEPGNGDSYRFGNAQARHLGHLTGLTELTIQYTHVTGPGLRALKPLRKLEKLMYFSEQADNDSLRSIGELTSLETLSLGKAKWDDAGL 567
[Close]
BLAST of mRNA_M-pyrifera_M_contig108876.1863.1 vs. uniprot
Match: A0A518CUJ7_9PLAN (Leucine Rich repeats (2 copies) n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CUJ7_9PLAN)

HSP 1 Score: 62.0 bits (149), Expect = 2.730e-8
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:   46 WKPAGLAQGHVTIPADAKVKLTLRADGARDMSWVKKLQPDDFYEVFIYPHPANANSYPFGDAHAKHLGHFSGLRNLALGYVQVT 297
            W   G AQG V++P DA +KL +    AR+++W+  L+PDD +E  + P     +    GD   +HL H +GL  L L +V V+
Sbjct:   71 WNLVGEAQGDVSVPVDAIIKLQVNVGTARNLAWISHLKPDDLFEFELSP-LLPQHQLRVGDNDVRHLRHLTGLTCLQLYHVDVS 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108876.1863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001187CA2B6.570e-3756.41redoxin domain-containing protein n=1 Tax=Symmachi... [more]
A0A517ZN01_9PLAN3.690e-3544.67Thiol-disulfide oxidoreductase ResA n=1 Tax=Symmac... [more]
A0A518CUJ7_9PLAN2.730e-836.90Leucine Rich repeats (2 copies) n=1 Tax=Polystyren... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108876contigM-pyrifera_M_contig108876:4..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog398767.Glov_2175
KEGG koko:K05516
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DnaJ molecular chaperone homology domain
EggNOG OGs1ND5S@1224,2WSUV@28221,42XS8@68525,43VYS@69541,COG2214@1,COG2214@2
COG Functional cat.O
Best tax levelDesulfuromonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Exons1
Model size459
Cds size459
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.6308386-CDS-M-pyrifera_M_contig108876:3..4621622815598.6308386-CDS-M-pyrifera_M_contig108876:3..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108876 4..462 -
1692277481.0572052-CDS-M-pyrifera_M_contig108876:3..4621692277481.0572052-CDS-M-pyrifera_M_contig108876:3..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108876 4..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108876.1863.1prot_M-pyrifera_M_contig108876.1863.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108876 4..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108876.1863.1

>prot_M-pyrifera_M_contig108876.1863.1 ID=prot_M-pyrifera_M_contig108876.1863.1|Name=mRNA_M-pyrifera_M_contig108876.1863.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
MDRHKKHFDYRRDWDWKPAGLAQGHVTIPADAKVKLTLRADGARDMSWVK
KLQPDDFYEVFIYPHPANANSYPFGDAHAKHLGHFSGLRNLALGYVQVTD
QGMQHLESMTSLEFLSIYSPEMGNGGLKSIGKLTSLERLELSKMKWTDIG
VLN
back to top

mRNA from alignment at M-pyrifera_M_contig108876:4..462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108876.1863.1 ID=mRNA_M-pyrifera_M_contig108876.1863.1|Name=mRNA_M-pyrifera_M_contig108876.1863.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig108876:4..462- (Macrocystis pyrifera P11B4 male)
ATGGACCGCCATAAAAAGCATTTTGACTATCGTCGCGATTGGGATTGGAA
ACCAGCAGGACTCGCCCAAGGTCATGTCACAATTCCCGCAGATGCGAAGG
TCAAACTGACCCTGAGGGCTGACGGTGCGCGGGACATGTCGTGGGTGAAG
AAACTGCAGCCCGATGACTTTTACGAAGTCTTCATCTATCCGCACCCAGC
GAACGCCAACTCCTATCCTTTTGGTGACGCGCATGCGAAACACCTGGGAC
ATTTTTCGGGGTTGAGGAACCTGGCGTTAGGGTACGTCCAAGTGACTGAT
CAAGGCATGCAACACCTCGAATCGATGACGTCTCTGGAATTCTTGAGCAT
CTATTCGCCGGAGATGGGCAACGGAGGCCTCAAGAGTATTGGCAAGCTCA
CCTCGCTGGAAAGGCTGGAGCTGAGCAAGATGAAATGGACTGACATTGGT
GTACTCAAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108876:4..462-

>mRNA_M-pyrifera_M_contig108876.1863.1 ID=mRNA_M-pyrifera_M_contig108876.1863.1|Name=mRNA_M-pyrifera_M_contig108876.1863.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig108876:4..462- (Macrocystis pyrifera P11B4 male)
ATGGACCGCCATAAAAAGCATTTTGACTATCGTCGCGATTGGGATTGGAA
ACCAGCAGGACTCGCCCAAGGTCATGTCACAATTCCCGCAGATGCGAAGG
TCAAACTGACCCTGAGGGCTGACGGTGCGCGGGACATGTCGTGGGTGAAG
AAACTGCAGCCCGATGACTTTTACGAAGTCTTCATCTATCCGCACCCAGC
GAACGCCAACTCCTATCCTTTTGGTGACGCGCATGCGAAACACCTGGGAC
ATTTTTCGGGGTTGAGGAACCTGGCGTTAGGGTACGTCCAAGTGACTGAT
CAAGGCATGCAACACCTCGAATCGATGACGTCTCTGGAATTCTTGAGCAT
CTATTCGCCGGAGATGGGCAACGGAGGCCTCAAGAGTATTGGCAAGCTCA
CCTCGCTGGAAAGGCTGGAGCTGAGCAAGATGAAATGGACTGACATTGGT
GTACTCAATATGGACCGCCATAAAAAGCATTTTGACTATCGTCGCGATTG
GGATTGGAAACCAGCAGGACTCGCCCAAGGTCATGTCACAATTCCCGCAG
ATGCGAAGGTCAAACTGACCCTGAGGGCTGACGGTGCGCGGGACATGTCG
TGGGTGAAGAAACTGCAGCCCGATGACTTTTACGAAGTCTTCATCTATCC
GCACCCAGCGAACGCCAACTCCTATCCTTTTGGTGACGCGCATGCGAAAC
ACCTGGGACATTTTTCGGGGTTGAGGAACCTGGCGTTAGGGTACGTCCAA
GTGACTGATCAAGGCATGCAACACCTCGAATCGATGACGTCTCTGGAATT
CTTGAGCATCTATTCGCCGGAGATGGGCAACGGAGGCCTCAAGAGTATTG
GCAAGCTCACCTCGCTGGAAAGGCTGGAGCTGAGCAAGATGAAATGGACT
GACATTGGTGTACTCAAT
back to top