mRNA_M-pyrifera_M_contig108853.1855.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108853.1855.1
Unique NamemRNA_M-pyrifera_M_contig108853.1855.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Match: A0A139AA01_GONPJ (H/ACA ribonucleoprotein complex subunit NOP10 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AA01_GONPJ)

HSP 1 Score: 65.1 bits (157), Expect = 3.860e-13
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK 102
            MHLMYY D+ G+RVYTLKKTAPDGSPTKSAHP +
Sbjct:    1 MHLMYYTDTNGQRVYTLKKTAPDGSPTKSAHPAR 34
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BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Match: C1EE84_MICCC (Nucleolar protein 10 n=2 Tax=Micromonas TaxID=38832 RepID=C1EE84_MICCC)

HSP 1 Score: 62.8 bits (151), Expect = 3.170e-12
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK 102
            M+LMYYLD +G RVYTLKKTAPDGSPT+SAHP +
Sbjct:    1 MYLMYYLDEKGNRVYTLKKTAPDGSPTQSAHPAR 34
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BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Match: I0YSD0_COCSC (Nucleolar protein 10 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YSD0_COCSC)

HSP 1 Score: 62.0 bits (149), Expect = 6.400e-12
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK 102
            M+LMYYLD  GKR+YTL+KTAPDGSPT+SAHP +
Sbjct:    1 MYLMYYLDDAGKRIYTLQKTAPDGSPTQSAHPAR 34
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BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Match: B6JW00_SCHJY (H/ACA ribonucleoprotein complex subunit NOP10 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6JW00_SCHJY)

HSP 1 Score: 60.5 bits (145), Expect = 2.610e-11
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK 102
            MHLMYYL+ EGKRVYTLKK APDG PT S+HP +
Sbjct:    1 MHLMYYLNDEGKRVYTLKKFAPDGKPTHSSHPAR 34
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BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Match: W7TTE0_9STRA (Nucleolar protein 10 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTE0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.050e-11
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK 102
            MHLMYYL+ EGKRVYTLKK APDG  T SAHPGK
Sbjct:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34
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BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Match: A0A0L0HHH4_SPIPD (H/ACA ribonucleoprotein complex subunit NOP10 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HHH4_SPIPD)

HSP 1 Score: 59.3 bits (142), Expect = 7.660e-11
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK 102
            MHLMYYLD  GKRVYTLKK  P+GS TKSAHP +
Sbjct:    1 MHLMYYLDESGKRVYTLKKLTPEGSVTKSAHPAR 34
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BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Match: K8F2J5_9CHLO (Nucleolar protein 10 n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F2J5_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 1.060e-10
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK 102
            M+LMYYL+ +GKRVYTLKKT PDG PT SAHP +
Sbjct:    1 MYLMYYLNEDGKRVYTLKKTGPDGKPTLSAHPAR 34
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BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Match: A0A090M6W0_OSTTA (Nucleolar protein 10 n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M6W0_OSTTA)

HSP 1 Score: 59.3 bits (142), Expect = 1.310e-10
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK 102
            M+LMYY D +G+RVYTLKKTAPDG+PT SAHP +
Sbjct:   24 MYLMYYTDEKGERVYTLKKTAPDGTPTHSAHPAR 57
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BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Match: A0A1X7VCA6_AMPQE (Nucleolar protein 10 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VCA6_AMPQE)

HSP 1 Score: 59.7 bits (143), Expect = 1.320e-10
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK 102
            M+LMYYLD EGKR+YTLKK  PDG+PT SAHP +
Sbjct:   39 MYLMYYLDKEGKRIYTLKKIGPDGTPTLSAHPAR 72
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BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Match: NOP10_SCHPO (H/ACA ribonucleoprotein complex subunit nop10 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=NOP10_SCHPO)

HSP 1 Score: 58.5 bits (140), Expect = 1.510e-10
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK 102
            MHLMYYL+ EGKRVYTLKK +PDG  TKS+HP +
Sbjct:    1 MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPAR 34
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108853.1855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A139AA01_GONPJ3.860e-1382.35H/ACA ribonucleoprotein complex subunit NOP10 n=1 ... [more]
C1EE84_MICCC3.170e-1279.41Nucleolar protein 10 n=2 Tax=Micromonas TaxID=3883... [more]
I0YSD0_COCSC6.400e-1276.47Nucleolar protein 10 n=2 Tax=Coccomyxa TaxID=41891... [more]
B6JW00_SCHJY2.610e-1176.47H/ACA ribonucleoprotein complex subunit NOP10 n=1 ... [more]
W7TTE0_9STRA5.050e-1182.35Nucleolar protein 10 n=1 Tax=Nannochloropsis gadit... [more]
A0A0L0HHH4_SPIPD7.660e-1176.47H/ACA ribonucleoprotein complex subunit NOP10 n=2 ... [more]
K8F2J5_9CHLO1.060e-1073.53Nucleolar protein 10 n=1 Tax=Bathycoccus prasinos ... [more]
A0A090M6W0_OSTTA1.310e-1073.53Nucleolar protein 10 n=1 Tax=Ostreococcus tauri Ta... [more]
A0A1X7VCA6_AMPQE1.320e-1073.53Nucleolar protein 10 n=1 Tax=Amphimedon queensland... [more]
NOP10_SCHPO1.510e-1073.53H/ACA ribonucleoprotein complex subunit nop10 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108853contigM-pyrifera_M_contig108853:71..175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue3.7e-08
Seed eggNOG ortholog296587.XP_002504930.1
Preferred nameNOP10
KEGG koko:K11130
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000154,GO:0000723,GO:0000741,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007004,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009553,GO:0009559,GO:0009561,GO:0009987,GO:0010197,GO:0010467,GO:0010833,GO:0015030,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016604,GO:0018130,GO:0019438,GO:0022613,GO:0030154,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031981,GO:0032200,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040031,GO:0042254,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0048229,GO:0048284,GO:0048518,GO:0048856,GO:0048869,GO:0050789,GO:0051276,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0090304,GO:0090661,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1904872,GO:1904874,GO:1990904
EggNOG free text desc.Nucleolar RNA-binding protein, Nop10p family
EggNOG OGs34MR3@3041,37VZC@33090,COG2260@1,KOG3503@2759
COG Functional cat.A
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03032
Exons1
Model size105
Cds size105
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.2558556-CDS-M-pyrifera_M_contig108853:70..1751622815598.2558556-CDS-M-pyrifera_M_contig108853:70..175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108853 71..175 -
1692277480.9202108-CDS-M-pyrifera_M_contig108853:70..1751692277480.9202108-CDS-M-pyrifera_M_contig108853:70..175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108853 71..175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108853.1855.1prot_M-pyrifera_M_contig108853.1855.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108853 71..175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108853.1855.1

>prot_M-pyrifera_M_contig108853.1855.1 ID=prot_M-pyrifera_M_contig108853.1855.1|Name=mRNA_M-pyrifera_M_contig108853.1855.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=35bp
MHLMYYLDSEGKRVYTLKKTAPDGSPTKSAHPGK*
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mRNA from alignment at M-pyrifera_M_contig108853:71..175-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108853.1855.1 ID=mRNA_M-pyrifera_M_contig108853.1855.1|Name=mRNA_M-pyrifera_M_contig108853.1855.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=105bp|location=Sequence derived from alignment at M-pyrifera_M_contig108853:71..175- (Macrocystis pyrifera P11B4 male)
ATGCATCTCATGTACTATTTGGATAGCGAAGGAAAGCGCGTGTACACGCT
GAAGAAGACTGCACCAGACGGAAGCCCCACCAAGTCTGCACACCCTGGTA
AATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108853:71..175-

>mRNA_M-pyrifera_M_contig108853.1855.1 ID=mRNA_M-pyrifera_M_contig108853.1855.1|Name=mRNA_M-pyrifera_M_contig108853.1855.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig108853:71..175- (Macrocystis pyrifera P11B4 male)
ATGCATCTCATGTACTATTTGGATAGCGAAGGAAAGCGCGTGTACACGCT
GAAGAAGACTGCACCAGACGGAAGCCCCACCAAGTCTGCACACCCTGGTA
AATGAATGCATCTCATGTACTATTTGGATAGCGAAGGAAAGCGCGTGTAC
ACGCTGAAGAAGACTGCACCAGACGGAAGCCCCACCAAGTCTGCACACCC
TGGTAAATGA
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