mRNA_M-pyrifera_M_contig108738.1838.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108738.1838.1
Unique NamemRNA_M-pyrifera_M_contig108738.1838.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108738.1838.1 vs. uniprot
Match: A0A1H6ZXF7_9BACT (Uncharacterized protein n=2 Tax=Cyclobacterium xiamenense TaxID=1297121 RepID=A0A1H6ZXF7_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.560e-6
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:   43 FGSFQSIQLLSNADGDLYLVGFHTSRDGE--ELADLFAVDLRQSPEKTLRKIASRTITLSEDNHFRYAAGLWI-DGDRLRLLASERNLETTTRLTV 321
            + S+Q+I L ++    LYLVG  T RDGE  ++ DLF +   +SP  +LRK+AS+     E   F+ AAGL I  G  L LL +   LE  TR+ V
Sbjct:  225 WNSYQNINLFTDQQERLYLVG--TGRDGEGNQVGDLFELQTEESP-PSLRKLASKVFHPGEPVDFKAAAGLVIGSGGSLELLGAPYQLEGRTRIDV 317
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108738.1838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1H6ZXF7_9BACT1.560e-641.67Uncharacterized protein n=2 Tax=Cyclobacterium xia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108738contigM-pyrifera_M_contig108738:56..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.3610506-CDS-M-pyrifera_M_contig108738:55..3851622815597.3610506-CDS-M-pyrifera_M_contig108738:55..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108738 56..385 +
1692277480.5033784-CDS-M-pyrifera_M_contig108738:55..3851692277480.5033784-CDS-M-pyrifera_M_contig108738:55..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108738 56..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108738.1838.1prot_M-pyrifera_M_contig108738.1838.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108738 56..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108738.1838.1

>prot_M-pyrifera_M_contig108738.1838.1 ID=prot_M-pyrifera_M_contig108738.1838.1|Name=mRNA_M-pyrifera_M_contig108738.1838.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
ASTAATTDWALSRLFGSFQSIQLLSNADGDLYLVGFHTSRDGEELADLFA
VDLRQSPEKTLRKIASRTITLSEDNHFRYAAGLWIDGDRLRLLASERNLE
TTTRLTVTP*
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mRNA from alignment at M-pyrifera_M_contig108738:56..385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108738.1838.1 ID=mRNA_M-pyrifera_M_contig108738.1838.1|Name=mRNA_M-pyrifera_M_contig108738.1838.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig108738:56..385+ (Macrocystis pyrifera P11B4 male)
GCGTCAACAGCGGCGACCACGGATTGGGCTCTGAGCAGACTCTTCGGCTC
ATTTCAGTCGATCCAGTTGCTCTCCAACGCAGATGGCGATCTCTATTTGG
TCGGCTTCCACACATCCCGCGATGGTGAAGAATTGGCAGATTTATTTGCA
GTCGACCTGAGACAGTCCCCGGAGAAGACCCTTCGTAAGATCGCGAGTCG
GACGATCACGCTGAGCGAGGACAATCACTTCCGGTATGCCGCTGGGCTAT
GGATCGACGGGGATCGCCTGCGTTTGTTGGCCAGCGAGCGGAATCTGGAA
ACAACGACACGCCTGACGGTCACTCCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108738:56..385+

>mRNA_M-pyrifera_M_contig108738.1838.1 ID=mRNA_M-pyrifera_M_contig108738.1838.1|Name=mRNA_M-pyrifera_M_contig108738.1838.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig108738:56..385+ (Macrocystis pyrifera P11B4 male)
GCGTCAACAGCGGCGACCACGGATTGGGCTCTGAGCAGACTCTTCGGCTC
ATTTCAGTCGATCCAGTTGCTCTCCAACGCAGATGGCGATCTCTATTTGG
TCGGCTTCCACACATCCCGCGATGGTGAAGAATTGGCAGATTTATTTGCA
GTCGACCTGAGACAGTCCCCGGAGAAGACCCTTCGTAAGATCGCGAGTCG
GACGATCACGCTGAGCGAGGACAATCACTTCCGGTATGCCGCTGGGCTAT
GGATCGACGGGGATCGCCTGCGTTTGTTGGCCAGCGAGCGGAATCTGGAA
ACAACGACACGCCTGACGGTCACTCCGTGAGCGTCAACAGCGGCGACCAC
GGATTGGGCTCTGAGCAGACTCTTCGGCTCATTTCAGTCGATCCAGTTGC
TCTCCAACGCAGATGGCGATCTCTATTTGGTCGGCTTCCACACATCCCGC
GATGGTGAAGAATTGGCAGATTTATTTGCAGTCGACCTGAGACAGTCCCC
GGAGAAGACCCTTCGTAAGATCGCGAGTCGGACGATCACGCTGAGCGAGG
ACAATCACTTCCGGTATGCCGCTGGGCTATGGATCGACGGGGATCGCCTG
CGTTTGTTGGCCAGCGAGCGGAATCTGGAAACAACGACACGCCTGACGGT
CACTCCGTGA
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