mRNA_M-pyrifera_M_contig108309.1768.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108309.1768.1
Unique NamemRNA_M-pyrifera_M_contig108309.1768.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Match: A0A7S1C3L3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3L3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.360e-11
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 YSMHIPERWFPGRVDVWMHSHQFWHLFVVLAAFIWYMEMEDFVVWQ 138
            YS+ +PER+ PGR DVW HSHQ +H+ VV AA+IWY  M+    W+
Sbjct:  428 YSLRVPERFAPGRFDVWCHSHQLFHVAVVAAAYIWYTHMQQLYAWR 473          
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Match: A0A6A0H3K4_HYAAZ (Uncharacterized protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H3K4_HYAAZ)

HSP 1 Score: 59.7 bits (143), Expect = 3.070e-10
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 YSMHIPERWFPGRVDVWMHSHQFWHLFVVLAAFIWYMEMEDFVVWQH 141
            Y++ +PERWFPG+ D+W HSHQ +H  VV AAF+ Y  +    +++H
Sbjct:   46 YAVRVPERWFPGKCDLWFHSHQIFHTLVVAAAFVHYHGISRMAMYRH 92          
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Match: A0A2T9YS10_9FUNG (Uncharacterized protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YS10_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 7.040e-10
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    1 YSMHIPERWFPGRVDVWMHSHQFWHLFVVLAAFIWYMEMEDFVVWQH 141
            Y   +PERWFPG+ D+W HSHQ +H FVV AA+  Y  + + + W H
Sbjct:  299 YGSRVPERWFPGKFDIWFHSHQIFHYFVVTAAYFHYFSVINSLKWLH 345          
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Match: A0A0S4JQM0_BODSA (Haemolysin-III related protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JQM0_BODSA)

HSP 1 Score: 60.5 bits (145), Expect = 1.140e-9
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1
Query:    1 YSMHIPERWFPGRVDVWMHSHQFWHLFVVLAAFI 102
            Y   +PERWFPGR D+W+HSHQ WH+FV+ AA +
Sbjct:  193 YIFKVPERWFPGRFDIWLHSHQLWHVFVLCAAMV 226          
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Match: W2TST5_NECAM (Uncharacterized protein n=2 Tax=Strongylida TaxID=6308 RepID=W2TST5_NECAM)

HSP 1 Score: 57.8 bits (138), Expect = 1.250e-9
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query:    1 YSMHIPERWFPGRVDVWMHSHQFWHLFVVLAAFI 102
            Y+  IPERWFPGR D+W  SHQ +H FVV+AAFI
Sbjct:   12 YATRIPERWFPGRCDLWFQSHQLFHTFVVIAAFI 45          
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Match: A0A087TWU3_STEMI (ADIPOR-like receptor (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087TWU3_STEMI)

HSP 1 Score: 57.0 bits (136), Expect = 1.320e-9
Identity = 20/46 (43.48%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 YSMHIPERWFPGRVDVWMHSHQFWHLFVVLAAFIWYMEMEDFVVWQ 138
            Y++ +PER+FPG+ D+W HSHQ +H+ V+ AAF+ Y  + +  V++
Sbjct:   12 YALRVPERFFPGKCDIWFHSHQIFHVLVIAAAFVHYHGISEMAVYR 57          
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Match: A0A1Y1WAA6_9FUNG (Putative hemolysin-III channel protein Izh2 n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WAA6_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 1.620e-9
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 YSMHIPERWFPGRVDVWMHSHQFWHLFVVLAAFIWYMEMEDFVVWQH 141
            Y   IPERWFPG+ D W+HSHQ +H+FVV+AA   Y+ +   + W H
Sbjct:  248 YGTRIPERWFPGKCDYWLHSHQIFHVFVVIAAVFHYVGVVRALRWTH 294          
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Match: A0A3P7KRB9_STRVU (Uncharacterized protein n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7KRB9_STRVU)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-9
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query:    1 YSMHIPERWFPGRVDVWMHSHQFWHLFVVLAAFI 102
            Y+  IPERWFPGR D+W  SHQ +H FVV+AAFI
Sbjct:   23 YATRIPERWFPGRCDLWFQSHQLFHTFVVIAAFI 56          
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Match: A0A1E1J9W7_LEIGU (Uncharacterized protein n=4 Tax=Viannia TaxID=37616 RepID=A0A1E1J9W7_LEIGU)

HSP 1 Score: 60.5 bits (145), Expect = 1.770e-9
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 YSMHIPERWFPGRVDVWMHSHQFWHLFVVLAAFIWYME-MEDFVVWQ 138
            Y   +PERW+PGR DVW+HSHQ WH FV+ AA + Y   +  F +W+
Sbjct:  281 YIFQVPERWYPGRFDVWLHSHQLWHFFVLCAAVVHYFTCIGAFQMWR 327          
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Match: A0A5N5T1D5_9CRUS (Adiponectin receptor protein n=2 Tax=Armadillidium TaxID=13346 RepID=A0A5N5T1D5_9CRUS)

HSP 1 Score: 59.3 bits (142), Expect = 2.210e-9
Identity = 21/46 (45.65%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 YSMHIPERWFPGRVDVWMHSHQFWHLFVVLAAFIWYMEMEDFVVWQ 138
            Y++ IPERWFPG+ D+W HSHQ +H+ V+ AAF+ Y  + +  +++
Sbjct:  148 YAVRIPERWFPGKCDLWFHSHQLFHILVIAAAFVHYHGISEMAMYR 193          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108309.1768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C3L3_9STRA8.360e-1154.35Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6A0H3K4_HYAAZ3.070e-1046.81Uncharacterized protein n=1 Tax=Hyalella azteca Ta... [more]
A0A2T9YS10_9FUNG7.040e-1048.94Uncharacterized protein n=1 Tax=Smittium simulii T... [more]
A0A0S4JQM0_BODSA1.140e-961.76Haemolysin-III related protein, putative n=1 Tax=B... [more]
W2TST5_NECAM1.250e-967.65Uncharacterized protein n=2 Tax=Strongylida TaxID=... [more]
A0A087TWU3_STEMI1.320e-943.48ADIPOR-like receptor (Fragment) n=2 Tax=Stegodyphu... [more]
A0A1Y1WAA6_9FUNG1.620e-951.06Putative hemolysin-III channel protein Izh2 n=1 Ta... [more]
A0A3P7KRB9_STRVU1.630e-967.65Uncharacterized protein n=1 Tax=Strongylus vulgari... [more]
A0A1E1J9W7_LEIGU1.770e-951.06Uncharacterized protein n=4 Tax=Viannia TaxID=3761... [more]
A0A5N5T1D5_9CRUS2.210e-945.65Adiponectin receptor protein n=2 Tax=Armadillidium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108309contigM-pyrifera_M_contig108309:3..206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog5664.LmjF.36.5520
KEGG koko:K07297
KEGG Pathwayko04152,ko04211,ko04920,ko04932,map04152,map04211,map04920,map04932
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Haemolysin-III related
EggNOG OGs3XXQQ@5653,COG1272@1,KOG0748@2759
COG Functional cat.T
Best tax levelKinetoplastida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size141
Cds size135
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108309.1768.1prot_M-pyrifera_M_contig108309.1768.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108309 9..206 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.943178-UTR-M-pyrifera_M_contig108309:2..81622815592.943178-UTR-M-pyrifera_M_contig108309:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108309 3..8 +
1692277478.604802-UTR-M-pyrifera_M_contig108309:2..81692277478.604802-UTR-M-pyrifera_M_contig108309:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108309 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.955334-CDS-M-pyrifera_M_contig108309:8..681622815592.955334-CDS-M-pyrifera_M_contig108309:8..68Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108309 9..68 +
1692277478.616535-CDS-M-pyrifera_M_contig108309:8..681692277478.616535-CDS-M-pyrifera_M_contig108309:8..68Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108309 9..68 +
1622815592.9666934-CDS-M-pyrifera_M_contig108309:131..2061622815592.9666934-CDS-M-pyrifera_M_contig108309:131..206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108309 132..206 +
1692277478.625477-CDS-M-pyrifera_M_contig108309:131..2061692277478.625477-CDS-M-pyrifera_M_contig108309:131..206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108309 132..206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108309.1768.1

>prot_M-pyrifera_M_contig108309.1768.1 ID=prot_M-pyrifera_M_contig108309.1768.1|Name=mRNA_M-pyrifera_M_contig108309.1768.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
MHIPERWFPGRVDVWMHSHQFWHLFVVLAAFIWYMEMEDFVVWQH
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mRNA from alignment at M-pyrifera_M_contig108309:3..206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108309.1768.1 ID=mRNA_M-pyrifera_M_contig108309.1768.1|Name=mRNA_M-pyrifera_M_contig108309.1768.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig108309:3..206+ (Macrocystis pyrifera P11B4 male)
TACTCCATGCACATCCCTGAGCGCTGGTTCCCGGGCAGAGTTGACGTGTG GATGCATAGCCATCAGGTCCGTCAGTGTGCGCGCGCCCTCCCACCCTCTC CTCACACATACACCCGCCGCCGCTCACAGTTTTGGCACCTGTTCGTCGTC CTCGCTGCGTTCATCTGGTACATGGAAATGGAGGACTTTGTTGTCTGGCA GCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108309:3..206+

>mRNA_M-pyrifera_M_contig108309.1768.1 ID=mRNA_M-pyrifera_M_contig108309.1768.1|Name=mRNA_M-pyrifera_M_contig108309.1768.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig108309:3..206+ (Macrocystis pyrifera P11B4 male)
ATGCACATCCCTGAGCGCTGGTTCCCGGGCAGAGTTGACGTGTGGATGCA
TAGCCATCAGATGCACATCCCTGAGCGCTGGTTCCCGGGCAGAGTTGACG
TGTGGATGCATAGCCATCAGTTTTGGCACCTGTTCGTCGTCCTCGCTGCG
TTCATCTGGTACATGGAAATGGAGGACTTTGTTGTCTGGCAGCACTTTTG
GCACCTGTTCGTCGTCCTCGCTGCGTTCATCTGGTACATGGAAATGGAGG
ACTTTGTTGTCTGGCAGCAC
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