mRNA_M-pyrifera_M_contig108127.1725.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108127.1725.1
Unique NamemRNA_M-pyrifera_M_contig108127.1725.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig108127.1725.1 vs. uniprot
Match: A0A2G4G8N4_9BACT (Uncharacterized protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2G4G8N4_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.060e-7
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 ILLNPNCELELNFVPLRTLSLLVEQGPRYDATVALRQAVGEWLPWF 138
            +LLNPNCE  LNFVPLRT + +V +   +DA  A   A+ EWLP F
Sbjct:  262 VLLNPNCEFPLNFVPLRTFAAIVRESGAWDARAAYLAAMSEWLPRF 307
[Close]
BLAST of mRNA_M-pyrifera_M_contig108127.1725.1 vs. uniprot
Match: A0A2V5MMT0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5MMT0_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 1.170e-5
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:    1 ILLNPNCELELNFVPLRTLSLLVEQGPRYDATVALRQAVGEWLP 132
            IL NPNCE E+NFVPLRTL++      +Y+       A+ EWLP
Sbjct:  270 ILSNPNCEFEVNFVPLRTLAMYAHATDKYEPRATYLAALKEWLP 313
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108127.1725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2G4G8N4_9BACT1.060e-754.35Uncharacterized protein n=1 Tax=Opitutae bacterium... [more]
A0A2V5MMT0_9BACT1.170e-550.00Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108127contigM-pyrifera_M_contig108127:2..139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.0243864-CDS-M-pyrifera_M_contig108127:1..1391622815591.0243864-CDS-M-pyrifera_M_contig108127:1..139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108127 2..139 +
1692277477.8047202-CDS-M-pyrifera_M_contig108127:1..1391692277477.8047202-CDS-M-pyrifera_M_contig108127:1..139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108127 2..139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108127.1725.1prot_M-pyrifera_M_contig108127.1725.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108127 2..139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108127.1725.1

>prot_M-pyrifera_M_contig108127.1725.1 ID=prot_M-pyrifera_M_contig108127.1725.1|Name=mRNA_M-pyrifera_M_contig108127.1725.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
ILLNPNCELELNFVPLRTLSLLVEQGPRYDATVALRQAVGEWLPWF
back to top

mRNA from alignment at M-pyrifera_M_contig108127:2..139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108127.1725.1 ID=mRNA_M-pyrifera_M_contig108127.1725.1|Name=mRNA_M-pyrifera_M_contig108127.1725.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig108127:2..139+ (Macrocystis pyrifera P11B4 male)
ATTCTCCTGAACCCCAACTGCGAGCTGGAACTCAACTTTGTTCCCTTGCG
CACTCTCTCCCTCCTGGTGGAGCAGGGGCCACGCTACGACGCCACCGTTG
CACTACGCCAGGCGGTGGGGGAGTGGCTGCCGTGGTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108127:2..139+

>mRNA_M-pyrifera_M_contig108127.1725.1 ID=mRNA_M-pyrifera_M_contig108127.1725.1|Name=mRNA_M-pyrifera_M_contig108127.1725.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig108127:2..139+ (Macrocystis pyrifera P11B4 male)
ATTCTCCTGAACCCCAACTGCGAGCTGGAACTCAACTTTGTTCCCTTGCG
CACTCTCTCCCTCCTGGTGGAGCAGGGGCCACGCTACGACGCCACCGTTG
CACTACGCCAGGCGGTGGGGGAGTGGCTGCCGTGGTTCATTCTCCTGAAC
CCCAACTGCGAGCTGGAACTCAACTTTGTTCCCTTGCGCACTCTCTCCCT
CCTGGTGGAGCAGGGGCCACGCTACGACGCCACCGTTGCACTACGCCAGG
CGGTGGGGGAGTGGCTGCCGTGGTTC
back to top