mRNA_M-pyrifera_M_contig108042.1711.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108042.1711.1
Unique NamemRNA_M-pyrifera_M_contig108042.1711.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108042.1711.1 vs. uniprot
Match: A9V6M3_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V6M3_MONBE)

HSP 1 Score: 52.4 bits (124), Expect = 4.920e-6
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   49 AKSKWAVFF-REDPSLASEIVSLGKANGEAGHWAVVTLQDTTYYVAGSKNVH 201
            A   W  FF  ED + A  ++ + KANGEAGH AVV  QD    +AGSKNVH
Sbjct:  167 AAVNWRRFFIGEDAASARHVICMDKANGEAGHVAVVRTQDAYVLLAGSKNVH 218
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BLAST of mRNA_M-pyrifera_M_contig108042.1711.1 vs. uniprot
Match: A0A1D1VWU4_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VWU4_RAMVA)

HSP 1 Score: 49.3 bits (116), Expect = 6.020e-5
Identity = 21/55 (38.18%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:   58 KWAVFFREDPSLASEIVSLGKANGEAGHWAVVTLQDTTYYVAGSKNVHCVWEKKQ 222
            K+  +F +    A  ++   K NGEA H+AV  ++D  Y +AGSKNVH ++ K++
Sbjct:  150 KYEKYFNQPIENAERVICTRKMNGEAAHFAVRWMEDDFYIIAGSKNVHLLFRKRE 204
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108042.1711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A9V6M3_MONBE4.920e-651.92Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A1D1VWU4_RAMVA6.020e-538.18Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108042contigM-pyrifera_M_contig108042:363..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.090871-CDS-M-pyrifera_M_contig108042:362..5961622815590.090871-CDS-M-pyrifera_M_contig108042:362..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108042 363..596 -
1692277477.3315234-CDS-M-pyrifera_M_contig108042:362..5961692277477.3315234-CDS-M-pyrifera_M_contig108042:362..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108042 363..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108042.1711.1prot_M-pyrifera_M_contig108042.1711.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108042 363..596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108042.1711.1

>prot_M-pyrifera_M_contig108042.1711.1 ID=prot_M-pyrifera_M_contig108042.1711.1|Name=mRNA_M-pyrifera_M_contig108042.1711.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
LPSEGEGVGAVKGESDAKSKWAVFFREDPSLASEIVSLGKANGEAGHWAV
VTLQDTTYYVAGSKNVHCVWEKKQGKKR
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mRNA from alignment at M-pyrifera_M_contig108042:363..596-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108042.1711.1 ID=mRNA_M-pyrifera_M_contig108042.1711.1|Name=mRNA_M-pyrifera_M_contig108042.1711.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig108042:363..596- (Macrocystis pyrifera P11B4 male)
CTTCCATCCGAGGGAGAAGGGGTTGGCGCGGTGAAGGGGGAAAGCGACGC
GAAAAGCAAGTGGGCCGTGTTTTTCAGAGAGGACCCCTCCCTCGCTTCCG
AAATCGTTTCTCTTGGCAAAGCCAACGGGGAAGCAGGACATTGGGCGGTG
GTGACCCTGCAAGACACCACATACTACGTGGCAGGGTCCAAGAACGTACA
CTGCGTGTGGGAGAAGAAGCAAGGAAAGAAACGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108042:363..596-

>mRNA_M-pyrifera_M_contig108042.1711.1 ID=mRNA_M-pyrifera_M_contig108042.1711.1|Name=mRNA_M-pyrifera_M_contig108042.1711.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig108042:363..596- (Macrocystis pyrifera P11B4 male)
CTTCCATCCGAGGGAGAAGGGGTTGGCGCGGTGAAGGGGGAAAGCGACGC
GAAAAGCAAGTGGGCCGTGTTTTTCAGAGAGGACCCCTCCCTCGCTTCCG
AAATCGTTTCTCTTGGCAAAGCCAACGGGGAAGCAGGACATTGGGCGGTG
GTGACCCTGCAAGACACCACATACTACGTGGCAGGGTCCAAGAACGTACA
CTGCGTGTGGGAGAAGAAGCAAGGAAAGAAACGACTTCCATCCGAGGGAG
AAGGGGTTGGCGCGGTGAAGGGGGAAAGCGACGCGAAAAGCAAGTGGGCC
GTGTTTTTCAGAGAGGACCCCTCCCTCGCTTCCGAAATCGTTTCTCTTGG
CAAAGCCAACGGGGAAGCAGGACATTGGGCGGTGGTGACCCTGCAAGACA
CCACATACTACGTGGCAGGGTCCAAGAACGTACACTGCGTGTGGGAGAAG
AAGCAAGGAAAGAAACGA
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