mRNA_M-pyrifera_M_contig107882.1674.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107882.1674.1
Unique NamemRNA_M-pyrifera_M_contig107882.1674.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Match: UPI0001CB96C3 (DNA polymerase delta subunit 3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB96C3)

HSP 1 Score: 62.0 bits (149), Expect = 2.150e-9
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 MAVEEEYFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCDREQDVAEPI-YLVAGEKLTTSG-VTRSMSIVPESQL 243
            MA++E Y ENL+++V+DE + VT++WL+ +LSV  N AK+ML+ +  +++     + YLV GE+    G V + +S+V  +QL
Sbjct:    1 MAMDELYLENLQEYVVDENKIVTYKWLSKTLSVHVNQAKQMLYMYVQKQKKKDLCVTYLVGGEQKDGDGLVMKKLSLVRGNQL 83          
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Match: UPI001471FFAF (DNA polymerase delta subunit 3-like n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001471FFAF)

HSP 1 Score: 58.2 bits (139), Expect = 2.490e-9
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    7 VEEEYFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCD--REQDVAE--PIYLVAGEKLTTSGVTRSMSIVPESQL 243
            ++E Y +N+ ++V D+ + VT++WL+ +L V  NTAK+MLF + D  R++  A+    YLV+G+ +     +  +S+V E QL
Sbjct:    1 MDELYLDNIDEFVNDDNKIVTYKWLSLTLGVHVNTAKQMLFHYLDHKRKESAAQLHATYLVSGKFMENGQASHKVSVVREEQL 83          
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Match: UPI001EE61B35 (LOW QUALITY PROTEIN: DNA polymerase delta subunit 3-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE61B35)

HSP 1 Score: 61.6 bits (148), Expect = 3.030e-9
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 MAVEEEYFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCDREQ-----DVAEPIYLVAGEKLTTSG-VTRSMSIVPESQL 243
            MAV+E Y ENL ++V DE + VTF+WL+ +L V  N AK+ML+AF  +E+     D     Y VAG   T +G +     +V E +L
Sbjct:    1 MAVDEYYMENLDEFVNDENKVVTFKWLSTNLKVHVNQAKQMLYAFVQQERNKKDNDKLTVTYFVAGTPKTKNGFMGHKCCVVAEEEL 87          
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Match: UPI00201EB9D2 (DNA polymerase delta subunit 3-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EB9D2)

HSP 1 Score: 61.6 bits (148), Expect = 3.040e-9
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 MAVEEEYFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCDREQ-----DVAEPIYLVAGEKLTTSG-VTRSMSIVPESQL 243
            MAV+E Y ENL ++V DE + VTF+WL+ +L V  N AK+ML+AF  +E+     D     Y VAG   T +G +     IV E +L
Sbjct:   12 MAVDEYYMENLDEFVNDENKVVTFKWLSTNLKVHVNQAKQMLYAFVQQERNKRDNDKLSVTYFVAGIPKTKNGFMGHKCCIVSEEEL 98          
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Match: UPI0020266277 (DNA polymerase delta subunit 3-like n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI0020266277)

HSP 1 Score: 56.6 bits (135), Expect = 3.250e-8
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   10 EEEYFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCDREQDV-----AEPIYLVAGEKLTTSGVTRSMSIVPESQL 243
            +E Y EN+ ++V D+ R VT++WL+ +L V  N AK+ML+ + +R++          +YLVAG  +    V   +++V E QL
Sbjct:    3 DELYLENIDEFVTDQNRVVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVVYLVAGNLVQNGHVLHKVAVVREDQL 85          
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Match: V4AGV2_LOTGI (DNA polymerase delta subunit 3 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AGV2_LOTGI)

HSP 1 Score: 58.5 bits (140), Expect = 3.680e-8
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   19 YFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCDREQDVAEP----IYLVAGEKLTTSGVTRSMS-IVPESQL 243
            Y ENL ++V DE + VT++WL+C+L +  N AKR+L+ F  +E++  +      Y VAG+    +G  + +  +VPE++L
Sbjct:   11 YLENLDEYVNDENKIVTYKWLSCTLQIHVNLAKRLLYLFLQQERNEKDNDLSVTYFVAGQHKDNNGNQKHICCVVPETEL 90          
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Match: UPI001B88DBF9 (DNA polymerase delta subunit 3-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88DBF9)

HSP 1 Score: 58.5 bits (140), Expect = 3.690e-8
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 MAVEEEYFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCDREQ----DVAEPIYLVAGEKLTTSGVTRSM----SIVPESQL 243
            M+ +E Y +NL ++V DE R VT++WL+  L+V  N AKRMLFAFC++++    D     Y VAG   T +G+        ++V E QL
Sbjct:    1 MSGDELYLDNLDEFVNDENRVVTYKWLSRVLTVHVNEAKRMLFAFCEQQRNKDHDDISVTYFVAGS--TAAGMHSPQEYKCAVVSEEQL 87          
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Match: A0A6J1SN40_FRAOC (DNA polymerase delta subunit 3 n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SN40_FRAOC)

HSP 1 Score: 58.5 bits (140), Expect = 3.720e-8
Identity = 25/65 (38.46%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   10 EEEYFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCDREQDVAEPIYLVAGEKLTTSG 204
            EE Y +NL ++V+DE + VT++WL+ +L++  N +K++L+ FC  ++D+    +L+AG KL  +G
Sbjct:   21 EEMYLQNLEEFVMDEDKIVTYKWLSKTLNIHVNQSKQLLYTFCKDKKDLVSATFLIAG-KLRCNG 84          
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Match: A0A6L2PFQ4_COPFO (DNA polymerase delta subunit 3 n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PFQ4_COPFO)

HSP 1 Score: 55.8 bits (133), Expect = 4.750e-8
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   19 YFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCDREQDVAEPIYLVAGEKLTTSGVTRSMSIVPESQL 243
            Y +N+ ++V+DE + VT++WL+  L +  NTAK++L+ F  ++++     YLV G  +   G    + IVPE  L
Sbjct:    9 YLQNIEEYVMDEDKIVTYKWLSKDLGIHVNTAKQLLYTFATKQKNSVCLTYLVGG--VLCDGTGCKIQIVPEEDL 81          
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Match: A0A6J2RH13_COTGO (DNA polymerase delta subunit 3 n=1 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2RH13_COTGO)

HSP 1 Score: 57.8 bits (138), Expect = 6.890e-8
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    7 VEEEYFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCD--REQDVAE--PIYLVAGEKLTTSGVTRSMSIVPESQL 243
            ++E Y +N+ ++V D+ + VT++WL+ +L V  NTAK+MLF + D  R++  A+    YLV+G+ +     +  +S+V E QL
Sbjct:    1 MDELYLDNIDEFVNDQDKIVTYKWLSLTLGVHVNTAKQMLFHYLDHKRKESSAQLHATYLVSGKSVDKGQTSHKVSVVKEEQL 83          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107882.1674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0001CB96C32.150e-939.76DNA polymerase delta subunit 3-like n=1 Tax=Saccog... [more]
UPI001471FFAF2.490e-936.14DNA polymerase delta subunit 3-like n=1 Tax=Thalas... [more]
UPI001EE61B353.030e-941.38LOW QUALITY PROTEIN: DNA polymerase delta subunit ... [more]
UPI00201EB9D23.040e-942.53DNA polymerase delta subunit 3-like n=1 Tax=Haliot... [more]
UPI00202662773.250e-834.94DNA polymerase delta subunit 3-like n=1 Tax=Sphaer... [more]
V4AGV2_LOTGI3.680e-836.25DNA polymerase delta subunit 3 n=1 Tax=Lottia giga... [more]
UPI001B88DBF93.690e-840.45DNA polymerase delta subunit 3-like isoform X1 n=2... [more]
A0A6J1SN40_FRAOC3.720e-838.46DNA polymerase delta subunit 3 n=1 Tax=Frankliniel... [more]
A0A6L2PFQ4_COPFO4.750e-834.67DNA polymerase delta subunit 3 n=1 Tax=Coptotermes... [more]
A0A6J2RH13_COTGO6.890e-836.14DNA polymerase delta subunit 3 n=1 Tax=Cottoperca ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107882contigM-pyrifera_M_contig107882:310..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.8
Seed ortholog evalue8.6e-08
Seed eggNOG ortholog10224.XP_002730626.1
Preferred namePOLD3
KEGG rclassRC02795
KEGG koko:K03504
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00262
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019725,GO:0019899,GO:0019985,GO:0022402,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0042592,GO:0042769,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051276,GO:0051606,GO:0051716,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.nucleotide-excision repair, DNA gap filling
EggNOG OGs28HEU@1,2QPSW@2759,39AQB@33154,3BDEI@33208,3CYZT@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03032,ko03400
Exons2
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.2204168-CDS-M-pyrifera_M_contig107882:309..4281622815588.2204168-CDS-M-pyrifera_M_contig107882:309..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107882 310..428 +
1692277476.5809937-CDS-M-pyrifera_M_contig107882:309..4281692277476.5809937-CDS-M-pyrifera_M_contig107882:309..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107882 310..428 +
1622815588.2398655-CDS-M-pyrifera_M_contig107882:488..6121622815588.2398655-CDS-M-pyrifera_M_contig107882:488..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107882 489..612 +
1692277476.5998836-CDS-M-pyrifera_M_contig107882:488..6121692277476.5998836-CDS-M-pyrifera_M_contig107882:488..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107882 489..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107882.1674.1prot_M-pyrifera_M_contig107882.1674.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107882 310..612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107882.1674.1

>prot_M-pyrifera_M_contig107882.1674.1 ID=prot_M-pyrifera_M_contig107882.1674.1|Name=mRNA_M-pyrifera_M_contig107882.1674.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MAVEEEYFENLRQWVIDEKRCVTFRWLACSLSVSSNTAKRMLFAFCDREQ
DVAEPIYLVAGEKLTTSGVTRSMSIVPESQL
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mRNA from alignment at M-pyrifera_M_contig107882:310..612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107882.1674.1 ID=mRNA_M-pyrifera_M_contig107882.1674.1|Name=mRNA_M-pyrifera_M_contig107882.1674.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig107882:310..612+ (Macrocystis pyrifera P11B4 male)
ATGGCGGTCGAGGAGGAGTACTTTGAGAACTTGCGGCAGTGGGTTATAGA TGAGAAGCGATGTGTGACGTTCCGGTGGCTGGCCTGCAGCCTGAGCGTGT CCAGCAACACAGCCAAGCGGTGCGAAAAGGCTGGGTGGGCTGGAGTGACA TTGGCTCACGCTTTCCTCGCGCATCCCAGCATGCTGTTTGCGTTCTGTGA CCGCGAGCAGGATGTAGCAGAGCCCATCTACCTGGTGGCGGGCGAGAAGC TGACGACGAGCGGCGTGACGCGGAGTATGTCGATCGTCCCTGAATCGCAA CTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107882:310..612+

>mRNA_M-pyrifera_M_contig107882.1674.1 ID=mRNA_M-pyrifera_M_contig107882.1674.1|Name=mRNA_M-pyrifera_M_contig107882.1674.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig107882:310..612+ (Macrocystis pyrifera P11B4 male)
ATGGCGGTCGAGGAGGAGTACTTTGAGAACTTGCGGCAGTGGGTTATAGA
TGAGAAGCGATGTGTGACGTTCCGGTGGCTGGCCTGCAGCCTGAGCGTGT
CCAGCAACACAGCCAAGCGATGGCGGTCGAGGAGGAGTACTTTGAGAACT
TGCGGCAGTGGGTTATAGATGAGAAGCGATGTGTGACGTTCCGGTGGCTG
GCCTGCAGCCTGAGCGTGTCCAGCAACACAGCCAAGCGCATGCTGTTTGC
GTTCTGTGACCGCGAGCAGGATGTAGCAGAGCCCATCTACCTGGTGGCGG
GCGAGAAGCTGACGACGAGCGGCGTGACGCGGAGTATGTCGATCGTCCCT
GAATCGCAACTGCATGCTGTTTGCGTTCTGTGACCGCGAGCAGGATGTAG
CAGAGCCCATCTACCTGGTGGCGGGCGAGAAGCTGACGACGAGCGGCGTG
ACGCGGAGTATGTCGATCGTCCCTGAATCGCAACTG
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