mRNA_M-pyrifera_M_contig10782.1661.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10782.1661.1
Unique NamemRNA_M-pyrifera_M_contig10782.1661.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10782.1661.1 vs. uniprot
Match: A0A6H5K3S5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3S5_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.380e-61
Identity = 114/206 (55.34%), Postives = 131/206 (63.59%), Query Frame = 1 
Query:    1 MRAVETLRQRISLPMGGGAAQGYTPVHPSDSEDADXXXXXXXLGTGGEEFGEGSRARGRGVGR---------------VSAGGGRRGGREEDLLWPPYTPLYTNMKVLRRKRLDASMVYYRAGKCTKVCFLMSLWGVSFLSWLGYTLARGSAYILPKDSVETKLTLSHSLFGAAAMYFVCSCLSGYSWYKSSYGTRPLPTMGDTSL 573
            MRAVETLRQR+   +G      Y PV  SDS    XXXX       G  FG G R + R + R                             LLWPPYTPLYTNMKVLRRKRLDASM+Y RAG CTK+CFL SLWG SFL+WLG+TLA GS YI+P+D   T L  S S+FGAAAMY VC+CL+GYSWYKSS+G RPLPT+GD++L
Sbjct:    2 MRAVETLRQRLPPSLG------YAPVLLSDSXXXXXXXXRGEFEIAGGNFG-GGRHQDRDLRRPRRXXXXXXXXXXXXXXXXXXXXXXXXXXLLWPPYTPLYTNMKVLRRKRLDASMMYSRAGPCTKICFLTSLWGASFLTWLGFTLASGSPYIIPEDPPATNLARSRSVFGAAAMYLVCACLTGYSWYKSSWGARPLPTLGDSTL 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10782.1661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3S5_9PHAE1.380e-6155.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10782contigM-pyrifera_M_contig10782:2779..4112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002760.1
Exons2
Model size579
Cds size579
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.529932-CDS-M-pyrifera_M_contig10782:2778..31061622815587.529932-CDS-M-pyrifera_M_contig10782:2778..3106Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10782 2779..3106 +
1692277476.2879336-CDS-M-pyrifera_M_contig10782:2778..31061692277476.2879336-CDS-M-pyrifera_M_contig10782:2778..3106Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10782 2779..3106 +
1622815587.5419867-CDS-M-pyrifera_M_contig10782:3861..41121622815587.5419867-CDS-M-pyrifera_M_contig10782:3861..4112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10782 3862..4112 +
1692277476.296567-CDS-M-pyrifera_M_contig10782:3861..41121692277476.296567-CDS-M-pyrifera_M_contig10782:3861..4112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10782 3862..4112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10782.1661.1prot_M-pyrifera_M_contig10782.1661.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10782 2779..4112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10782.1661.1

>prot_M-pyrifera_M_contig10782.1661.1 ID=prot_M-pyrifera_M_contig10782.1661.1|Name=mRNA_M-pyrifera_M_contig10782.1661.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
MRAVETLRQRISLPMGGGAAQGYTPVHPSDSEDADGDGSDYDLGTGGEEF
GEGSRARGRGVGRVSAGGGRRGGREEDLLWPPYTPLYTNMKVLRRKRLDA
SMVYYRAGKCTKVCFLMSLWGVSFLSWLGYTLARGSAYILPKDSVETKLT
LSHSLFGAAAMYFVCSCLSGYSWYKSSYGTRPLPTMGDTSLQ*
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mRNA from alignment at M-pyrifera_M_contig10782:2779..4112+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10782.1661.1 ID=mRNA_M-pyrifera_M_contig10782.1661.1|Name=mRNA_M-pyrifera_M_contig10782.1661.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1334bp|location=Sequence derived from alignment at M-pyrifera_M_contig10782:2779..4112+ (Macrocystis pyrifera P11B4 male)
ATGAGAGCCGTTGAGACCTTGCGCCAGAGGATTTCTCTGCCTATGGGGGG
CGGAGCCGCGCAGGGGTACACGCCGGTACACCCGTCCGACAGCGAAGATG
CGGATGGCGATGGCAGCGATTACGACCTCGGGACGGGGGGCGAGGAGTTC
GGTGAGGGGAGCAGGGCGCGGGGACGGGGAGTGGGGAGGGTGAGCGCGGG
GGGGGGGAGACGGGGCGGAAGAGAGGAGGATTTGTTGTGGCCGCCGTACA
CGCCGCTCTACACCAACATGAAGGTCTTGAGACGGAAAAGGCTGGACGCG
TCGATGGTGTACTACCGTGCGGGGAAATGTAAGTGCGCCGAGATCCGAGC
GTCCCCGCTTGTCGAGCTCTTGCGCGAACGAACGGGATTCTTGCTTGCTT
TCTGTCCTGTTTTCTGTGTTGTGCCCTTTGGGCTCTCTTCCTTTTTATTT
CTCGCCCTGTCTCTCCGTCTCTGTTGGTCTCTTCTGCAATATACCTGGGT
TTTTTTTTCTTCGACTCTCTTTCTCAAGATCCTGGACCTGGCCGTCAGCC
ATCGTGCTTCTGATTTTTTTATGTGGTTGATGCCTGGGTTGGAGTCGACG
AAGAACTGTCTCACACCAAAATTTCCTAACACCAGAACTGTCATACATCC
GCTCGGCGGTACGTAATCGTCCCTTACATGGTGTCCCGGTTCTATTTGTC
CTGCTGGTTTTCGCAGTCTTGTGTGGCGTTGGCGGGTCGTTGCCTTCTTT
TTTTTTACCCCCGGCTCCGTTCCACCGACTGATGCTGACACCGAGTTGTT
CGGATTTATTTGTCCAGTCGCGTCTCGTCGGGTGTGTGATGGTCTACCGG
CCGGGGGGAAACCTATCCTGCACGCAGAATCCCCTCACGATGGAAGGGAA
AGTTTCGATCGTCGATTTCTTATCCCTGCCTCCTGTAAGTGTGTAACGAA
ACGAGCAGGCACATATATATATATATACATGCATACATGAACGCTAAAAC
CCACAAGCATACGTCCGCACCCACGCCTGCGCCCACGCCCACGCGCACCC
ACACCGATCCCCCATGCAACCGCAATCTCACAGGCACGAAAGTTTGCTTC
TTAATGTCGCTCTGGGGGGTGTCGTTTTTGAGCTGGCTAGGGTACACGCT
GGCGAGGGGGTCGGCGTACATCTTACCGAAGGACAGCGTGGAGACGAAAC
TGACGCTCTCGCACTCCTTGTTCGGCGCCGCTGCCATGTATTTCGTCTGC
TCGTGCCTCTCCGGGTACTCGTGGTACAAGTCGTCGTACGGAACGAGGCC
GTTACCGACCATGGGAGATACGAGCTTGCAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10782:2779..4112+

>mRNA_M-pyrifera_M_contig10782.1661.1 ID=mRNA_M-pyrifera_M_contig10782.1661.1|Name=mRNA_M-pyrifera_M_contig10782.1661.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig10782:2779..4112+ (Macrocystis pyrifera P11B4 male)
ATGAGAGCCGTTGAGACCTTGCGCCAGAGGATTTCTCTGCCTATGGGGGG
CGGAGCCGCGCAGGGGTACACGCCGGTACACCCGTCCGACAGCGAAGATG
CGGATGGCGATGGCAGCGATTACGACCTCGGGACGGGGGGCGAGGAGTTC
GGTGAGGGGAGCAGGGCGCGGGGACGGGGAGTGGGGAGGGTGAGCGCGGG
GGGGGGGAGACGGGGCGGAAGAGAGGAGGATTTGTTGTGGCCGCCGTACA
CGCCGCTCTACACCAACATGAAGGTCTTGAGACGGAAAAGGCTGGACGCG
TCGATGGTGTACTACCGTGCGGGGAAATATGAGAGCCGTTGAGACCTTGC
GCCAGAGGATTTCTCTGCCTATGGGGGGCGGAGCCGCGCAGGGGTACACG
CCGGTACACCCGTCCGACAGCGAAGATGCGGATGGCGATGGCAGCGATTA
CGACCTCGGGACGGGGGGCGAGGAGTTCGGTGAGGGGAGCAGGGCGCGGG
GACGGGGAGTGGGGAGGGTGAGCGCGGGGGGGGGGAGACGGGGCGGAAGA
GAGGAGGATTTGTTGTGGCCGCCGTACACGCCGCTCTACACCAACATGAA
GGTCTTGAGACGGAAAAGGCTGGACGCGTCGATGGTGTACTACCGTGCGG
GGAAATGCACGAAAGTTTGCTTCTTAATGTCGCTCTGGGGGGTGTCGTTT
TTGAGCTGGCTAGGGTACACGCTGGCGAGGGGGTCGGCGTACATCTTACC
GAAGGACAGCGTGGAGACGAAACTGACGCTCTCGCACTCCTTGTTCGGCG
CCGCTGCCATGTATTTCGTCTGCTCGTGCCTCTCCGGGTACTCGTGGTAC
AAGTCGTCGTACGGAACGAGGCCGTTACCGACCATGGGAGATACGAGCTT
GCAGTAAGCACGAAAGTTTGCTTCTTAATGTCGCTCTGGGGGGTGTCGTT
TTTGAGCTGGCTAGGGTACACGCTGGCGAGGGGGTCGGCGTACATCTTAC
CGAAGGACAGCGTGGAGACGAAACTGACGCTCTCGCACTCCTTGTTCGGC
GCCGCTGCCATGTATTTCGTCTGCTCGTGCCTCTCCGGGTACTCGTGGTA
CAAGTCGTCGTACGGAACGAGGCCGTTACCGACCATGGGAGATACGAGCT
TGCAGTAA
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