mRNA_M-pyrifera_M_contig107806.1659.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107806.1659.1
Unique NamemRNA_M-pyrifera_M_contig107806.1659.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107806.1659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107806contigM-pyrifera_M_contig107806:174..605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_002840.1
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.4506788-CDS-M-pyrifera_M_contig107806:173..6051622815587.4506788-CDS-M-pyrifera_M_contig107806:173..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107806 174..605 -
1692277476.2450116-CDS-M-pyrifera_M_contig107806:173..6051692277476.2450116-CDS-M-pyrifera_M_contig107806:173..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107806 174..605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107806.1659.1prot_M-pyrifera_M_contig107806.1659.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107806 174..605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107806.1659.1

>prot_M-pyrifera_M_contig107806.1659.1 ID=prot_M-pyrifera_M_contig107806.1659.1|Name=mRNA_M-pyrifera_M_contig107806.1659.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
LDDDAIETLCKGMIRGSAHLTRLDLADNSEIGPLGAKHIAEMLSGHRALR
RLSLAWTSLGDAGVAEIARVLSDSIAPLRRLKLASCGMKDAGAAALGSSL
APNTTLRELSLTGNTVTAAGAIVIAGSLATNGALRTLDVSECPL
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mRNA from alignment at M-pyrifera_M_contig107806:174..605-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107806.1659.1 ID=mRNA_M-pyrifera_M_contig107806.1659.1|Name=mRNA_M-pyrifera_M_contig107806.1659.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig107806:174..605- (Macrocystis pyrifera P11B4 male)
TTGGATGATGATGCTATTGAAACGCTGTGCAAAGGTATGATTCGTGGTTC
AGCTCACTTGACTCGTTTGGATCTCGCAGATAATAGCGAAATCGGTCCAC
TTGGAGCAAAACACATTGCAGAAATGTTGTCTGGTCATCGAGCATTGCGA
AGATTGTCGCTTGCTTGGACTTCTTTGGGTGATGCAGGAGTAGCAGAAAT
TGCAAGGGTGTTGAGTGATTCCATCGCTCCGTTGCGACGGCTGAAGCTTG
CATCCTGTGGGATGAAGGACGCAGGAGCAGCTGCACTTGGTTCCTCCCTT
GCACCCAATACAACCCTACGTGAACTGTCACTTACTGGAAACACTGTAAC
TGCTGCAGGTGCAATTGTGATTGCTGGGTCTCTTGCTACGAATGGTGCTC
TGCGAACCCTTGATGTCTCCGAATGCCCATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107806:174..605-

>mRNA_M-pyrifera_M_contig107806.1659.1 ID=mRNA_M-pyrifera_M_contig107806.1659.1|Name=mRNA_M-pyrifera_M_contig107806.1659.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig107806:174..605- (Macrocystis pyrifera P11B4 male)
TTGGATGATGATGCTATTGAAACGCTGTGCAAAGGTATGATTCGTGGTTC
AGCTCACTTGACTCGTTTGGATCTCGCAGATAATAGCGAAATCGGTCCAC
TTGGAGCAAAACACATTGCAGAAATGTTGTCTGGTCATCGAGCATTGCGA
AGATTGTCGCTTGCTTGGACTTCTTTGGGTGATGCAGGAGTAGCAGAAAT
TGCAAGGGTGTTGAGTGATTCCATCGCTCCGTTGCGACGGCTGAAGCTTG
CATCCTGTGGGATGAAGGACGCAGGAGCAGCTGCACTTGGTTCCTCCCTT
GCACCCAATACAACCCTACGTGAACTGTCACTTACTGGAAACACTGTAAC
TGCTGCAGGTGCAATTGTGATTGCTGGGTCTCTTGCTACGAATGGTGCTC
TGCGAACCCTTGATGTCTCCGAATGCCCATTGTTGGATGATGATGCTATT
GAAACGCTGTGCAAAGGTATGATTCGTGGTTCAGCTCACTTGACTCGTTT
GGATCTCGCAGATAATAGCGAAATCGGTCCACTTGGAGCAAAACACATTG
CAGAAATGTTGTCTGGTCATCGAGCATTGCGAAGATTGTCGCTTGCTTGG
ACTTCTTTGGGTGATGCAGGAGTAGCAGAAATTGCAAGGGTGTTGAGTGA
TTCCATCGCTCCGTTGCGACGGCTGAAGCTTGCATCCTGTGGGATGAAGG
ACGCAGGAGCAGCTGCACTTGGTTCCTCCCTTGCACCCAATACAACCCTA
CGTGAACTGTCACTTACTGGAAACACTGTAACTGCTGCAGGTGCAATTGT
GATTGCTGGGTCTCTTGCTACGAATGGTGCTCTGCGAACCCTTGATGTCT
CCGAATGCCCATTG
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