mRNA_M-pyrifera_M_contig10776.1650.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10776.1650.1
Unique NamemRNA_M-pyrifera_M_contig10776.1650.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Match: A0A6H5L7N0_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N0_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 7.900e-50
Identity = 78/99 (78.79%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:    4 INSRADGPGQAAKALKRRLKGDNPKMLQLTLTLCEATVKNCSRPLHQALGTREFLSEVAILCNGQKGYEVRSQALSLVQEWGIAFQTDRSLAFAETYGR 300
            IN + DGP  AAKALKRRLK DNPK+L+LTLTLCE T+KNCSRPLH+ALG REFL+EVA LCNGQKGYEVRS+AL L+Q+WGIAFQ+DRSLA++ETYGR
Sbjct:   45 INHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGAREFLAEVAGLCNGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGR 143
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BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Match: D7G5B8_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B8_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.490e-47
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    4 INSRADGPGQAAKALKRRLKGDNPKMLQLTLTLCEATVKNCSRPLHQALGTREFLSEVAILCNGQKGYEVRSQALSLVQEWGIAFQTDRSLAFAETYGR 300
            IN + DGP  AAKALKRRLK DNPK+L LTLTLCE T+KNCSRPLH+ALG REFL+EVA LCNGQKGYEVRS+AL L+Q+WGIAFQ+DRSLA++ETYGR
Sbjct:   45 INHQGDGPSHAAKALKRRLKSDNPKILGLTLTLCETTMKNCSRPLHRALGAREFLAEVAGLCNGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGR 143
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BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Match: A0A835Z2K5_9STRA (VHS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.090e-24
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:    4 INSRADGPGQAAKALKRRLKGDNPKMLQLTLTLCEATVKNCSRPLHQALGTREFLSEVAILCNGQKGYEVRSQALSLVQEWGIAFQTDRSLAFAETYGR 300
            I++  +GP  AAKAL+RRLK +N K++ LTLTLC+  VKNC  PLH ALGTREFL  V  +  G+ G +V+ QAL LVQ+WG AF     L ++  Y R
Sbjct:   74 IDATVEGPQNAAKALQRRLKSENAKVVSLTLTLCDVCVKNCRPPLHAALGTREFLGHVEDVAGGRLGPQVQQQALELVQQWGEAFAGSPHLYYSSLYTR 172
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BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Match: A0A7S2GD13_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GD13_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.480e-22
Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    4 INSRADGPGQAAKALKRRLKGDNPKMLQLTLTLCEATVKNCSRPLHQALGTREFLSEVAILCNGQKGYEVRSQALSLVQEWGIAFQTDRS---LAFAETY 294
            INS  DG   A++ L+RRLK DN ++L LTL L +A +KNCS  +H A+ ++EF+ +V  L +G++G+EVR QAL L+Q W I F+ DRS   + F ETY
Sbjct:   35 INSSPDGSVTASQTLRRRLKNDNMRVLTLTLELTDACIKNCSSDMHSAVASKEFMGDVVALTDGKQGWEVREQALKLIQAWAIEFK-DRSGPFVVFTETY 133
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BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Match: A0A4D9D0H1_9STRA (VHS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0H1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.250e-18
Identity = 45/104 (43.27%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    4 INSRADGPG-QAAKALKRRLKGDNPKMLQLTLTLCEATVKNCSRP-----LHQALGTREFLSEVAILCNGQKGYEVRSQALSLVQEWGIAFQTDR-SLAFAETY 294
            +NS  +  G QA +A +R+L+  NPK+LQLTLTL E  +KN  +P      H  +G+ +FL++++ L +G++G+EV+ QAL+L+Q+WG++F++ R +LAF  TY
Sbjct:   47 VNSDDEFAGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTY 150
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BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Match: F0YK31_AURAN (VHS domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK31_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 4.290e-17
Identity = 42/85 (49.41%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   43 ALKRRLKGDNPKMLQLTLTLCEATVKNCSRPLHQALGTREFLSEVAILCNGQKGYEVRSQALSLVQEWGIAFQTDRSL-AFAETY 294
            A+K+RL  ++  +  L+LTL E  VKNC   +H A+G ++ LSE+A LC G  G EV+ QAL+LVQ+WG+AF++  +L AFA+TY
Sbjct:   42 AVKKRLGKNDAHVTALSLTLLEMCVKNCGEAVHAAVGQQQILSEIAKLCEGGSGEEVKRQALALVQQWGVAFESRDALPAFADTY 126
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BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Match: A0A5E4R1D8_9NEOP (VHS domain-containing protein n=3 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4R1D8_9NEOP)

HSP 1 Score: 67.8 bits (164), Expect = 3.060e-11
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:    4 INSRADGPGQAAKALKRRLK---GDNPKMLQLTLTLCEATVKNCSRPLHQALGTREFLSEVAILCNGQKGYE--VRSQALSLVQEWGIAFQTDRSL 276
            INS  DGP  A KA+++RL    G N  ++  TLT+ E+ VKNC RP H  + ++EF+SE+  L   +      V+ + LSL+Q W  AFQT   L
Sbjct:   41 INSTPDGPKDAIKAIRKRLTQSAGKNYTIVMYTLTVLESCVKNCGRPFHVMVCSKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQTQPEL 136
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BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Match: A0A821WN63_9NEOP (Hypothetical protein n=7 Tax=Pieris TaxID=7115 RepID=A0A821WN63_9NEOP)

HSP 1 Score: 64.7 bits (156), Expect = 5.300e-10
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    4 INSRADGPGQAAKALKRRLK---GDNPKMLQLTLTLCEATVKNCSRPLHQALGTREFLSEVAILCNGQKGYE--VRSQALSLVQEWGIAFQTDRSL 276
            IN+ ADGP  A KA+++RL    G N  ++  +LT+ E+ VKNC RP H  +  +EF+SE+  L   +      V+ + LSL+Q W  AFQ    L
Sbjct:   41 INTSADGPKDAIKAIRKRLTQSAGKNYTIVMYSLTVLESCVKNCGRPFHVLVCNKEFISELVKLIGPKNDPPTVVQEKVLSLIQCWADAFQNQPEL 136
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BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Match: A0A0N0PB37_PAPMA (TOM1-like protein 2 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N0PB37_PAPMA)

HSP 1 Score: 63.9 bits (154), Expect = 6.050e-10
Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    4 INSRADGPGQAAKALKRRLK---GDNPKMLQLTLTLCEATVKNCSRPLHQALGTREFLSEVAILCNGQKGYE--VRSQALSLVQEWGIAFQTDRSL 276
            +NS ADGP  A KA+++RL    G N  ++  TLT+ E  VKNC +P H  +  +EF+S++  L   +      V+ + LSL+Q W  AFQ    L
Sbjct:   41 VNSSADGPKDAIKAIRKRLTQSAGRNYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISDLVKLIGPKNDPPTVVQEKVLSLIQCWADAFQNQPEL 136
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BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Match: A0A437BTB0_CHISP (Uncharacterized protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A437BTB0_CHISP)

HSP 1 Score: 62.8 bits (151), Expect = 2.450e-9
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:    4 INSRADGPGQAAKALKRRLK---GDNPKMLQLTLTLCEATVKNCSRPLHQALGTREFLSEVAILCNGQKGYE--VRSQALSLVQEWGIAFQTDRSL 276
            INS AD P  A KA+++RL    G N  ++  TLT+ E  VKNC R  H  +  +EF+SE+  L   +      V+ + LSL+Q W  AFQ  + L
Sbjct:   41 INSTADAPKDAIKAIRKRLTQSAGKNYTVVMYTLTVLETCVKNCGRAFHVLVCNKEFISELVKLIGPKNDPPTVVQEKVLSLIQCWADAFQNQQEL 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10776.1650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7N0_9PHAE7.900e-5078.79VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G5B8_ECTSI4.490e-4778.79VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z2K5_9STRA5.090e-2452.53VHS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2GD13_9STRA5.480e-2249.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A4D9D0H1_9STRA4.250e-1843.27VHS domain-containing protein n=2 Tax=Monodopsidac... [more]
F0YK31_AURAN4.290e-1749.41VHS domain-containing protein n=2 Tax=Aureococcus ... [more]
A0A5E4R1D8_9NEOP3.060e-1141.67VHS domain-containing protein n=3 Tax=Leptidea sin... [more]
A0A821WN63_9NEOP5.300e-1039.58Hypothetical protein n=7 Tax=Pieris TaxID=7115 Rep... [more]
A0A0N0PB37_PAPMA6.050e-1038.54TOM1-like protein 2 n=1 Tax=Papilio machaon TaxID=... [more]
A0A437BTB0_CHISP2.450e-939.58Uncharacterized protein n=1 Tax=Chilo suppressalis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10776contigM-pyrifera_M_contig10776:1259..2891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2e-38
Seed eggNOG ortholog2880.D7G5B8
Preferred nameGGA2
KEGG koko:K12346,ko:K12404,ko:K20524
KEGG TC2.A.55.1
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005938,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0015031,GO:0015629,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019538,GO:0019941,GO:0030029,GO:0030036,GO:0030163,GO:0030479,GO:0030863,GO:0030864,GO:0031984,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042886,GO:0043130,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0061645,GO:0070273,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097435,GO:0098657,GO:0098791,GO:0099568,GO:1901564,GO:1901565,GO:1901575,GO:1901981
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG1087@1,KOG1087@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Exons2
Model size305
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.0780072-CDS-M-pyrifera_M_contig10776:1258..13511622815587.0780072-CDS-M-pyrifera_M_contig10776:1258..1351Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10776 1259..1351 -
1692277476.1045163-CDS-M-pyrifera_M_contig10776:1258..13511692277476.1045163-CDS-M-pyrifera_M_contig10776:1258..1351Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10776 1259..1351 -
1622815587.0912142-CDS-M-pyrifera_M_contig10776:2681..28911622815587.0912142-CDS-M-pyrifera_M_contig10776:2681..2891Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10776 2682..2891 -
1692277476.1167338-CDS-M-pyrifera_M_contig10776:2681..28911692277476.1167338-CDS-M-pyrifera_M_contig10776:2681..2891Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10776 2682..2891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10776.1650.1prot_M-pyrifera_M_contig10776.1650.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10776 1259..2891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10776.1650.1

>prot_M-pyrifera_M_contig10776.1650.1 ID=prot_M-pyrifera_M_contig10776.1650.1|Name=mRNA_M-pyrifera_M_contig10776.1650.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
KINSRADGPGQAAKALKRRLKGDNPKMLQLTLTLCEATVKNCSRPLHQAL
GTREFLSEVAILCNGQKGYEVRSQALSLVQEWGIAFQTDRSLAFAETYGR
*
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mRNA from alignment at M-pyrifera_M_contig10776:1259..2891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10776.1650.1 ID=mRNA_M-pyrifera_M_contig10776.1650.1|Name=mRNA_M-pyrifera_M_contig10776.1650.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1633bp|location=Sequence derived from alignment at M-pyrifera_M_contig10776:1259..2891- (Macrocystis pyrifera P11B4 male)
AAGATCAACAGCCGCGCGGATGGACCGGGTCAAGCCGCCAAGGCCCTTAA
GCGCCGCCTCAAAGGCGACAACCCCAAAATGCTGCAGCTGACACTTACTC
TGTGCGAGGCAACGGTGAAAAACTGTTCCAGACCCCTCCACCAAGCCCTT
GGCACCAGGGAGTTTTTGTCAGAGGTGGCCATCCTCTGCAACGGACAGAA
GGGATACGAGGTGTGTGGCATCTTTCTATTAATATTAATAAACGGACCAT
GTCACTGGGATGCGAAGACTAAACTACAACAGTAGCAAAGCCCCCACCTA
CGGAGGCAGGTTTGGATAGTGATATTGGATGTCTGAGTGCCGATCCAGCC
GTGCGGTGCTGGACGTCTGCCTACAACAGACACTACAGTCAGATCTACTG
CGGATGCTATCAACTCATTGTTCGCTCAAGCTCAAGCTTAAGCGCAAGCA
CAAGCTCAAGCCTGAAAAGCCGTGGTTGGTGTATGATATCATGCTCAAAA
GACACGACGTGGTTTGTCATGCGCAATGCCACGATAAACGAATTTCCCGG
TTCCACACCTTCCACGGCGGTGGTCCGTGCATGCCTATTGCAAACACTCT
GTTATACGGCAGCATTAAATATTAATAGTAATCCCTTCAGTACGTACTAA
TGATGCACACACAAGTGCTTAATATTAGTGTGGGATACTGTTTCACGGCA
TAGTAGAAAGGTTTTCGAGACCCTCGACTGGTTCGGGGGGCTAACTATTG
CATGGGTTCTATTATCAATAAAGCATTCCAGCAGAGAAGCCCCGCGGACA
TTATGGAAGCATATTTTTGATGTGCACATCATCGCAGTTCTTGCCGCGGA
TACGCGCAAGGAATTGACGTAAATGCTGCTATTAATACCTGTATTCAATA
CCAGTATGGATAGTGCTTCGTCGTGGTCTGGCAAGGAGTATCAATTGGAA
TTGGCTGCAGCTGCGAGATTCGCCGACCTAGATGAGCACGGTCGGAGCAG
GGAGCAGGTGGTTATACCAAGATTGGTGGTGTTTCTGTTTTTTTTGCGAG
CGACCCTGAAATAAACCCTCATTGAATTGACCTTGTGTGGATGGCCGTTG
TTATGCTTGTTTCGTATCTAATAATAGGCCAACTGTAAAATATATGCAAC
ATACAATGCCAAGATGATCTCTCGAGTAGAGGTTTACATAGGTTTGTATC
CACACTTATGTCCTTACCCTCTCAGTCGCTTCGGAGAACGGGAGGCCACG
TTTGGTCTCCTTCTGTACCATCAATTTGCAAGCATCAATAATGAAACCTA
ATCATTTAAACTTTTGCAGAACCGCCTGGACCTTTTTACGTGAAGACGGT
ACAGCGGTGTCCTTCTGCGGTATTGATTTTTTGGACATCTGCACGTCAGT
AGTGTTGATATTGATAGGACAAAATTATGGATGTTGCGTGTCAGCAATGG
GACTCACCACTGCAGTAGTGCCCGTACATGCTTTCACGCAGCACGTTTCT
GCTGCTGCTGCTGGTATGTCCTGGACTGGATTATGAACAGGTGCGCTCTC
AAGCGCTAAGCCTGGTGCAGGAGTGGGGCATCGCTTTCCAGACGGACAGG
AGTCTGGCATTCGCTGAAACATACGGCCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10776:1259..2891-

>mRNA_M-pyrifera_M_contig10776.1650.1 ID=mRNA_M-pyrifera_M_contig10776.1650.1|Name=mRNA_M-pyrifera_M_contig10776.1650.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig10776:1259..2891- (Macrocystis pyrifera P11B4 male)
AAGATCAACAGCCGCGCGGATGGACCGGGTCAAGCCGCCAAGGCCCTTAA
GCGCCGCCTCAAAGGCGACAACCCCAAAATGCTGCAGCTGACACTTACTC
TGTGCGAGGCAACGGTGAAAAACTGTTCCAGACCCCTCCACCAAGCCCTT
GGCACCAGGGAGTTTTTGTCAGAGGTGGCCATCCTCTGCAACGGACAGAA
GGGATACGAGAAGATCAACAGCCGCGCGGATGGACCGGGTCAAGCCGCCA
AGGCCCTTAAGCGCCGCCTCAAAGGCGACAACCCCAAAATGCTGCAGCTG
ACACTTACTCTGTGCGAGGCAACGGTGAAAAACTGTTCCAGACCCCTCCA
CCAAGCCCTTGGCACCAGGGAGTTTTTGTCAGAGGTGGCCATCCTCTGCA
ACGGACAGAAGGGATACGAGGTGCGCTCTCAAGCGCTAAGCCTGGTGCAG
GAGTGGGGCATCGCTTTCCAGACGGACAGGAGTCTGGCATTCGCTGAAAC
ATACGGCCGGTGAGTGCGCTCTCAAGCGCTAAGCCTGGTGCAGGAGTGGG
GCATCGCTTTCCAGACGGACAGGAGTCTGGCATTCGCTGAAACATACGGC
CGGTGA
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