mRNA_M-pyrifera_M_contig107654.1635.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107654.1635.1
Unique NamemRNA_M-pyrifera_M_contig107654.1635.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Match: A0A517PKR8_9PLAN (UDP-glucose 4-epimerase n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517PKR8_9PLAN)

HSP 1 Score: 409 bits (1050), Expect = 3.470e-142
Identity = 202/205 (98.54%), Postives = 204/205 (99.51%), Query Frame = 1
Query:    1 GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 615
            GFIGF+VTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKS+ FEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL
Sbjct:   11 GFIGFHVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSDQFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 215          
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Match: A0A518A3T0_9PLAN (UDP-glucose 4-epimerase n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A3T0_9PLAN)

HSP 1 Score: 372 bits (954), Expect = 1.390e-127
Identity = 181/205 (88.29%), Postives = 194/205 (94.63%), Query Frame = 1
Query:    1 GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 615
            GFIGF+VTSQLLA GH+VTGIDNLNSHYSVQLK+DRLQ+LQ+S  F+F EI+L DVAAFD+LF+   FDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCR+ ++ HLVYASSSSVYGANKKTPYAT DPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVH+FTKAILEGTPIKVFNHGNL
Sbjct:   11 GFIGFHVTSQLLAGGHRVTGIDNLNSHYSVQLKRDRLQLLQESEQFQFEEIELADVAAFDRLFDGDPFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRQSRIAHLVYASSSSVYGANKKTPYATDDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHLFTKAILEGTPIKVFNHGNL 215          
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Match: A0A517RD83_9PLAN (UDP-glucose 4-epimerase n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RD83_9PLAN)

HSP 1 Score: 343 bits (880), Expect = 2.390e-116
Identity = 165/205 (80.49%), Postives = 184/205 (89.76%), Query Frame = 1
Query:    1 GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 615
            GFIGF++TS+LL+QGHQVTG+DNLNSHY V LK+DRLQ +Q  + F+F E D+ DVA   ++F+Q  FDKVIHLAAEVGVRNSLLKPLEYVQSNV+GFVN+LE CR  QV H+VYASSSSVYGAN+KTPY+T D VDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAV +FTKAILEGTPIKVFNHGNL
Sbjct:   11 GFIGFHITSKLLSQGHQVTGVDNLNSHYDVALKRDRLQQIQPESGFQFQEADVTDVATMSRIFQQSGFDKVIHLAAEVGVRNSLLKPLEYVQSNVLGFVNVLEQCRLSQVAHVVYASSSSVYGANRKTPYSTQDRVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVFLFTKAILEGTPIKVFNHGNL 215          
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Match: A0A3D3RFA8_9PLAN (Capsular biosynthesis protein CpsI n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3RFA8_9PLAN)

HSP 1 Score: 338 bits (867), Expect = 2.260e-114
Identity = 162/205 (79.02%), Postives = 183/205 (89.27%), Query Frame = 1
Query:    1 GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 615
            GFIGF+VT++LL+QGH+VTG+DNLNSHY V+LK+DRL  L++   FEF E D+ DV +   LF Q  F KVIHLAAEVGVRNSLLKPLEYVQSNV+GFVNLLE CR  +V+H+VYASSSSVYGAN+K PY+THD VDHP+SLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAV++FTKAILEGTPIKVFNHGNL
Sbjct:   11 GFIGFHVTARLLSQGHRVTGVDNLNSHYDVRLKRDRLAELRQFETFEFHEADITDVESLSHLFVQNPFQKVIHLAAEVGVRNSLLKPLEYVQSNVLGFVNLLEQCRLKEVEHVVYASSSSVYGANRKIPYSTHDAVDHPISLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVYLFTKAILEGTPIKVFNHGNL 215          
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Match: A0A355G8F4_9PLAN (Capsular biosynthesis protein CpsI n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355G8F4_9PLAN)

HSP 1 Score: 335 bits (859), Expect = 3.700e-113
Identity = 163/205 (79.51%), Postives = 181/205 (88.29%), Query Frame = 1
Query:    1 GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 615
            GFIGF+V+++LLAQGHQVTGIDNLN HY V LK+DRL  LQK + F+F E D+ DVA    LF Q    KVIHLAAEVGVRNSLLKPLEYVQSNV+GFVNLLE CR  +++H+VYASSSSVYGAN+K PY+THD VDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAV++FTKAILEGTPIKVFNHG+L
Sbjct:   11 GFIGFHVSARLLAQGHQVTGIDNLNRHYDVGLKRDRLAELQKYSAFQFHEGDITDVACLSNLFSQNSCQKVIHLAAEVGVRNSLLKPLEYVQSNVLGFVNLLEQCRLKKIEHVVYASSSSVYGANRKIPYSTHDAVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVYLFTKAILEGTPIKVFNHGDL 215          
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Match: A0A518IA77_9PLAN (UDP-glucose 4-epimerase n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IA77_9PLAN)

HSP 1 Score: 335 bits (859), Expect = 3.700e-113
Identity = 162/205 (79.02%), Postives = 182/205 (88.78%), Query Frame = 1
Query:    1 GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 615
            GFIGF+VTS+LL+ GHQVTG+DNLNSHY VQLKQ R+  +Q  + F+F E D+ D  +  ++F+Q  F+KV+HLAAEVGVRNSLLKPLEYVQSNV+GFVN+LE CR  QV HLVYASSSSVYGAN+KTPY+THD VDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAV +FTKAILEGTPIKVFNHGNL
Sbjct:   11 GFIGFHVTSKLLSLGHQVTGVDNLNSHYDVQLKQARINQIQHDSSFQFIETDITDTDSMLRVFDQAAFEKVVHLAAEVGVRNSLLKPLEYVQSNVLGFVNILELCRIHQVAHLVYASSSSVYGANRKTPYSTHDRVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVFLFTKAILEGTPIKVFNHGNL 215          
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Match: A0A517VAR8_9PLAN (UDP-glucose 4-epimerase n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VAR8_9PLAN)

HSP 1 Score: 332 bits (850), Expect = 8.630e-112
Identity = 156/205 (76.10%), Postives = 181/205 (88.29%), Query Frame = 1
Query:    1 GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 615
            GFIGF+V++++L+QGH+VTG+DNLNSHY V LK DRL  LQ+   F+F E D+ DV    QLF +  F KV+HLAAEVGVRNSLL+PLEY+QSNV+GFVNLLE CR  +++H+VYASSSSVYGAN+K PY+THD VDHPVSLYAATKR+DELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAV++FTKAILEGTPIKVFNHGNL
Sbjct:   11 GFIGFHVSARMLSQGHRVTGVDNLNSHYDVSLKLDRLAELQQYPTFQFHEADITDVECLSQLFNESSFQKVVHLAAEVGVRNSLLRPLEYIQSNVLGFVNLLEQCRLKEMEHVVYASSSSVYGANRKIPYSTHDAVDHPVSLYAATKRSDELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVYLFTKAILEGTPIKVFNHGNL 215          
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Match: A0A517VZR4_9PLAN (UDP-glucose 4-epimerase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VZR4_9PLAN)

HSP 1 Score: 329 bits (843), Expect = 9.980e-111
Identity = 157/205 (76.59%), Postives = 181/205 (88.29%), Query Frame = 1
Query:    1 GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 615
            GFIGF+V S+LL+QG+ V GIDNLN+HY VQLK+DRLQ LQ+   F+F E ++ DV +  QLF+Q  F+KV+HLAAEVGVRNSL +PL+YVQSNV GFVNLLE+CR+ QV+H VYASSSSVYGAN+KTPY+T D VDHP+S+YAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAV +FTKAILEGTPIKVFNHG L
Sbjct:   11 GFIGFHVASRLLSQGYHVVGIDNLNAHYDVQLKRDRLQELQQEQAFQFLETNITDVKSISQLFQQFTFEKVVHLAAEVGVRNSLERPLDYVQSNVGGFVNLLEYCREAQVRHFVYASSSSVYGANRKTPYSTSDRVDHPISIYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVFLFTKAILEGTPIKVFNHGKL 215          
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Match: A0A1X4GAP1_9CYAN (NAD-dependent epimerase n=4 Tax=Cylindrospermopsis raciborskii TaxID=77022 RepID=A0A1X4GAP1_9CYAN)

HSP 1 Score: 283 bits (723), Expect = 1.370e-92
Identity = 133/205 (64.88%), Postives = 165/205 (80.49%), Query Frame = 1
Query:    1 GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 615
            GFIGF++T+ LL QG  V GIDNLN++Y V LKQ RL+ LQ + LF FA ++L D    D+LF + +FD V++LAA+ GVR SL  P  Y+ SN+VGF N+LE CR  QV+HLV+ASSSSVYGAN K P++THD VDHP+SLYAATK+A+EL+AH+YSHLY LPTTGLRFFTVYGPWGRPDMA+ +FTKAIL G PI+VFN+G +
Sbjct:   10 GFIGFHLTNYLLRQGETVIGIDNLNNYYDVSLKQARLEQLQPNKLFTFAHVELADQQGIDKLFTEHEFDAVVNLAAQAGVRYSLKNPHAYINSNIVGFTNILESCRHHQVKHLVFASSSSVYGANTKVPFSTHDNVDHPISLYAATKKANELMAHTYSHLYGLPTTGLRFFTVYGPWGRPDMALFLFTKAILSGEPIEVFNYGKM 214          
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Match: UPI000426C5BE (NAD-dependent epimerase n=1 Tax=Azovibrio restrictus TaxID=146938 RepID=UPI000426C5BE)

HSP 1 Score: 281 bits (720), Expect = 3.910e-92
Identity = 134/205 (65.37%), Postives = 161/205 (78.54%), Query Frame = 1
Query:    1 GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAEIDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVNLLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRADELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVFNHGNL 615
            GFIG NV+ +LL +G QV G+DNLN +Y  QLK+DRLQ L+    F F ++D+ D    +QLF  ++FDKV+HLAA+ GVR SL  P  Y+ SN+VGF N+LE CR  QV HL YASSSSVYG N K P++ HD VDHPVSLYAATK+A+EL+AH+YSHLY LPTTGLRFFTVYGPWGRPDMA+ +FTKAILEG PI VFNHGN+
Sbjct:   10 GFIGSNVSRRLLERGDQVVGLDNLNDYYDPQLKRDRLQRLEPQAGFSFVKLDVADRPGMEQLFAAEKFDKVVHLAAQAGVRYSLKNPHAYIDSNLVGFTNILEGCRHNQVAHLAYASSSSVYGGNTKMPFSEHDAVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFFTVYGPWGRPDMALFLFTKAILEGRPIDVFNHGNM 214          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107654.1635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PKR8_9PLAN3.470e-14298.54UDP-glucose 4-epimerase n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A3T0_9PLAN1.390e-12788.29UDP-glucose 4-epimerase n=3 Tax=Gimesia panareensi... [more]
A0A517RD83_9PLAN2.390e-11680.49UDP-glucose 4-epimerase n=1 Tax=Gimesia alba TaxID... [more]
A0A3D3RFA8_9PLAN2.260e-11479.02Capsular biosynthesis protein CpsI n=2 Tax=Gimesia... [more]
A0A355G8F4_9PLAN3.700e-11379.51Capsular biosynthesis protein CpsI n=2 Tax=Plancto... [more]
A0A518IA77_9PLAN3.700e-11379.02UDP-glucose 4-epimerase n=1 Tax=Gimesia fumaroli T... [more]
A0A517VAR8_9PLAN8.630e-11276.10UDP-glucose 4-epimerase n=5 Tax=Planctomycetaceae ... [more]
A0A517VZR4_9PLAN9.980e-11176.59UDP-glucose 4-epimerase n=2 Tax=Gimesia aquarii Ta... [more]
A0A1X4GAP1_9CYAN1.370e-9264.88NAD-dependent epimerase n=4 Tax=Cylindrospermopsis... [more]
UPI000426C5BE3.910e-9265.37NAD-dependent epimerase n=1 Tax=Azovibrio restrict... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107654contigM-pyrifera_M_contig107654:3..617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score340.9
Seed ortholog evalue4.2e-91
Seed eggNOG ortholog344747.PM8797T_03504
Preferred namecapI
KEGG rclassRC00289
KEGG koko:K08679
KEGG ReactionR01385
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.epimerase dehydratase
EggNOG OGs2IXJ5@203682,COG0451@1,COG0451@2
EC5.1.3.6
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.4800396-CDS-M-pyrifera_M_contig107654:2..6171622815586.4800396-CDS-M-pyrifera_M_contig107654:2..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107654 3..617 +
1692277475.8617904-CDS-M-pyrifera_M_contig107654:2..6171692277475.8617904-CDS-M-pyrifera_M_contig107654:2..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107654 3..617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107654.1635.1prot_M-pyrifera_M_contig107654.1635.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107654 3..617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107654.1635.1

>prot_M-pyrifera_M_contig107654.1635.1 ID=prot_M-pyrifera_M_contig107654.1635.1|Name=mRNA_M-pyrifera_M_contig107654.1635.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
GFIGFNVTSQLLAQGHQVTGIDNLNSHYSVQLKQDRLQVLQKSNLFEFAE
IDLVDVAAFDQLFEQQQFDKVIHLAAEVGVRNSLLKPLEYVQSNVVGFVN
LLEHCRKGQVQHLVYASSSSVYGANKKTPYATHDPVDHPVSLYAATKRAD
ELIAHSYSHLYDLPTTGLRFFTVYGPWGRPDMAVHIFTKAILEGTPIKVF
NHGNL
back to top

mRNA from alignment at M-pyrifera_M_contig107654:3..617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107654.1635.1 ID=mRNA_M-pyrifera_M_contig107654.1635.1|Name=mRNA_M-pyrifera_M_contig107654.1635.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig107654:3..617+ (Macrocystis pyrifera P11B4 male)
GGATTCATCGGATTCAATGTCACGTCTCAACTGCTCGCGCAGGGCCATCA GGTTACGGGCATTGATAACCTCAACAGTCACTACTCAGTACAGTTGAAGC AGGATCGTCTCCAGGTCTTACAGAAGTCCAATCTGTTCGAGTTCGCTGAA ATTGACCTGGTTGACGTTGCCGCCTTTGATCAACTGTTTGAGCAGCAGCA GTTTGATAAGGTGATTCATCTGGCGGCAGAAGTCGGGGTCCGTAATTCCC TGCTCAAACCGCTGGAGTATGTTCAGAGTAATGTAGTCGGGTTTGTGAAC CTGCTCGAGCATTGTCGTAAAGGTCAGGTGCAGCACCTGGTCTATGCCTC GTCCAGCTCGGTCTATGGTGCGAATAAAAAGACGCCGTATGCCACGCACG ATCCGGTTGACCATCCGGTCAGTCTGTATGCCGCTACCAAGCGGGCTGAT GAACTCATCGCTCACAGTTACAGTCATCTGTATGATCTGCCCACAACCGG CCTGCGGTTCTTCACCGTTTACGGACCCTGGGGCCGTCCCGACATGGCAG TGCACATTTTCACGAAAGCCATTCTGGAAGGCACACCAATCAAGGTTTTC AATCACGGGAACCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig107654:3..617+

>mRNA_M-pyrifera_M_contig107654.1635.1 ID=mRNA_M-pyrifera_M_contig107654.1635.1|Name=mRNA_M-pyrifera_M_contig107654.1635.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig107654:3..617+ (Macrocystis pyrifera P11B4 male)
GGATTCATCGGATTCAATGTCACGTCTCAACTGCTCGCGCAGGGCCATCA
GGTTACGGGCATTGATAACCTCAACAGTCACTACTCAGTACAGTTGAAGC
AGGATCGTCTCCAGGTCTTACAGAAGTCCAATCTGTTCGAGTTCGCTGAA
ATTGACCTGGTTGACGTTGCCGCCTTTGATCAACTGTTTGAGCAGCAGCA
GTTTGATAAGGTGATTCATCTGGCGGCAGAAGTCGGGGTCCGTAATTCCC
TGCTCAAACCGCTGGAGTATGTTCAGAGTAATGTAGTCGGGTTTGTGAAC
CTGCTCGAGCATTGTCGTAAAGGTCAGGTGCAGCACCTGGTCTATGCCTC
GTCCAGCTCGGTCTATGGTGCGAATAAAAAGACGCCGTATGCCACGCACG
ATCCGGTTGACCATCCGGTCAGTCTGTATGCCGCTACCAAGCGGGCTGAT
GAACTCATCGCTCACAGTTACAGTCATCTGTATGATCTGCCCACAACCGG
CCTGCGGTTCTTCACCGTTTACGGACCCTGGGGCCGTCCCGACATGGCAG
TGCACATTTTCACGAAAGCCATTCTGGAAGGCACACCAATCAAGGTTTTC
AATCACGGGAACCTGGGATTCATCGGATTCAATGTCACGTCTCAACTGCT
CGCGCAGGGCCATCAGGTTACGGGCATTGATAACCTCAACAGTCACTACT
CAGTACAGTTGAAGCAGGATCGTCTCCAGGTCTTACAGAAGTCCAATCTG
TTCGAGTTCGCTGAAATTGACCTGGTTGACGTTGCCGCCTTTGATCAACT
GTTTGAGCAGCAGCAGTTTGATAAGGTGATTCATCTGGCGGCAGAAGTCG
GGGTCCGTAATTCCCTGCTCAAACCGCTGGAGTATGTTCAGAGTAATGTA
GTCGGGTTTGTGAACCTGCTCGAGCATTGTCGTAAAGGTCAGGTGCAGCA
CCTGGTCTATGCCTCGTCCAGCTCGGTCTATGGTGCGAATAAAAAGACGC
CGTATGCCACGCACGATCCGGTTGACCATCCGGTCAGTCTGTATGCCGCT
ACCAAGCGGGCTGATGAACTCATCGCTCACAGTTACAGTCATCTGTATGA
TCTGCCCACAACCGGCCTGCGGTTCTTCACCGTTTACGGACCCTGGGGCC
GTCCCGACATGGCAGTGCACATTTTCACGAAAGCCATTCTGGAAGGCACA
CCAATCAAGGTTTTCAATCACGGGAACCTG
back to top