mRNA_M-pyrifera_M_contig107632.1624.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107632.1624.1
Unique NamemRNA_M-pyrifera_M_contig107632.1624.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig107632.1624.1 vs. uniprot
Match: A0A5A8D1F1_CAFRO (DNA replication licensing factor MCM2 n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8D1F1_CAFRO)

HSP 1 Score: 91.7 bits (226), Expect = 9.060e-19
Identity = 60/143 (41.96%), Postives = 82/143 (57.34%), Query Frame = 1 
Query:    4 DGSEEGEDLLAEDTLAADYQRIAALDTYDARDLDEREFAGLTAAERLAAEEELAQRDAARGLRPEGLVGERMSEEERG-TFHERMRRMRRAVRPGEXXXXXXXEEGYAPFDIANYDVPLAEWIATAPVRAEIRRQFTEFLTTF 429
            D   EGEDL+ +  + ADY+ I  LD YD   L     A +    R AAE E+A+RDAARGLRP+GL  +   +E++  T+ +R RR++R  +           E YAPF++  Y VPL EWIA    RAE+RR+F  FL  +
Sbjct:   42 DEDSEGEDLMDDAKMQADYRAIQELDQYDPTMLAADGDAAVDHDARRAAEIEMARRDAARGLRPQGLDDDDYFDEDQDETYQDRQRRLKRMRKAA----AGDEPEDYAPFELGTYSVPLREWIAQEQTRAEVRRRFRWFLDNY 180
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107632.1624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8D1F1_CAFRO9.060e-1941.96DNA replication licensing factor MCM2 n=2 Tax=Sar ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107632contigM-pyrifera_M_contig107632:35..463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue1e-11
Seed eggNOG ortholog2880.D8LH39
Preferred nameMCM2
KEGG koko:K02540
KEGG Pathwayko03030,ko04110,ko04111,ko04113,map03030,map04110,map04111,map04113
KEGG ModuleM00285
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000347,GO:0000785,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006275,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009987,GO:0010015,GO:0010073,GO:0010075,GO:0010082,GO:0010154,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022414,GO:0022622,GO:0030174,GO:0031323,GO:0031326,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032991,GO:0034641,GO:0034645,GO:0040008,GO:0042127,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048364,GO:0048507,GO:0048509,GO:0048608,GO:0048638,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051171,GO:0051239,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0099402,GO:1901360,GO:1901576,GO:1905392,GO:2000026,GO:2000112,GO:2000280
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1241@1,KOG0477@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.0686603-CDS-M-pyrifera_M_contig107632:34..4631622815586.0686603-CDS-M-pyrifera_M_contig107632:34..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107632 35..463 -
1692277475.724328-CDS-M-pyrifera_M_contig107632:34..4631692277475.724328-CDS-M-pyrifera_M_contig107632:34..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107632 35..463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107632.1624.1prot_M-pyrifera_M_contig107632.1624.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107632 35..463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107632.1624.1

>prot_M-pyrifera_M_contig107632.1624.1 ID=prot_M-pyrifera_M_contig107632.1624.1|Name=mRNA_M-pyrifera_M_contig107632.1624.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
EDGSEEGEDLLAEDTLAADYQRIAALDTYDARDLDEREFAGLTAAERLAA
EEELAQRDAARGLRPEGLVGERMSEEERGTFHERMRRMRRAVRPGEGEGE
GEGEEGYAPFDIANYDVPLAEWIATAPVRAEIRRQFTEFLTTF
back to top

mRNA from alignment at M-pyrifera_M_contig107632:35..463-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107632.1624.1 ID=mRNA_M-pyrifera_M_contig107632.1624.1|Name=mRNA_M-pyrifera_M_contig107632.1624.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig107632:35..463- (Macrocystis pyrifera P11B4 male)
GAGGATGGGTCTGAGGAGGGGGAGGATTTGTTGGCAGAGGATACACTGGC
CGCAGATTACCAACGTATCGCTGCATTGGATACGTACGATGCGCGCGATT
TGGATGAACGCGAGTTTGCAGGATTGACGGCTGCAGAGAGACTTGCTGCA
GAAGAAGAGCTTGCACAACGTGATGCAGCACGTGGATTGCGTCCGGAAGG
ACTCGTAGGAGAGCGCATGTCCGAGGAAGAGCGTGGAACGTTTCATGAGC
GAATGCGGCGCATGCGAAGGGCTGTACGTCCTGGAGAAGGGGAAGGGGAA
GGAGAAGGAGAGGAGGGCTATGCACCATTTGACATTGCAAACTACGATGT
GCCCTTGGCAGAGTGGATTGCAACAGCTCCTGTACGTGCCGAAATTCGGC
GTCAATTCACAGAGTTCTTGACCACATTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig107632:35..463-

>mRNA_M-pyrifera_M_contig107632.1624.1 ID=mRNA_M-pyrifera_M_contig107632.1624.1|Name=mRNA_M-pyrifera_M_contig107632.1624.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig107632:35..463- (Macrocystis pyrifera P11B4 male)
GAGGATGGGTCTGAGGAGGGGGAGGATTTGTTGGCAGAGGATACACTGGC
CGCAGATTACCAACGTATCGCTGCATTGGATACGTACGATGCGCGCGATT
TGGATGAACGCGAGTTTGCAGGATTGACGGCTGCAGAGAGACTTGCTGCA
GAAGAAGAGCTTGCACAACGTGATGCAGCACGTGGATTGCGTCCGGAAGG
ACTCGTAGGAGAGCGCATGTCCGAGGAAGAGCGTGGAACGTTTCATGAGC
GAATGCGGCGCATGCGAAGGGCTGTACGTCCTGGAGAAGGGGAAGGGGAA
GGAGAAGGAGAGGAGGGCTATGCACCATTTGACATTGCAAACTACGATGT
GCCCTTGGCAGAGTGGATTGCAACAGCTCCTGTACGTGCCGAAATTCGGC
GTCAATTCACAGAGTTCTTGACCACATTTGAGGATGGGTCTGAGGAGGGG
GAGGATTTGTTGGCAGAGGATACACTGGCCGCAGATTACCAACGTATCGC
TGCATTGGATACGTACGATGCGCGCGATTTGGATGAACGCGAGTTTGCAG
GATTGACGGCTGCAGAGAGACTTGCTGCAGAAGAAGAGCTTGCACAACGT
GATGCAGCACGTGGATTGCGTCCGGAAGGACTCGTAGGAGAGCGCATGTC
CGAGGAAGAGCGTGGAACGTTTCATGAGCGAATGCGGCGCATGCGAAGGG
CTGTACGTCCTGGAGAAGGGGAAGGGGAAGGAGAAGGAGAGGAGGGCTAT
GCACCATTTGACATTGCAAACTACGATGTGCCCTTGGCAGAGTGGATTGC
AACAGCTCCTGTACGTGCCGAAATTCGGCGTCAATTCACAGAGTTCTTGA
CCACATTT
back to top