mRNA_M-pyrifera_M_contig107623.1620.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107623.1620.1
Unique NamemRNA_M-pyrifera_M_contig107623.1620.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107623.1620.1 vs. uniprot
Match: A0A6C7E9Y4_ILUCY (Uncharacterized protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E9Y4_ILUCY)

HSP 1 Score: 55.8 bits (133), Expect = 5.870e-9
Identity = 28/41 (68.29%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    4 SDAAIVLVVLAAGTFALKAAGPIVLGDRRLPDRVQRVIDLL 126
            SDAAIVL+V+ AGT+ LK+AGP+VLG RRLP  VQ+++DLL
Sbjct:    2 SDAAIVLLVMTAGTYVLKSAGPLVLGTRRLPASVQQLVDLL 42
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BLAST of mRNA_M-pyrifera_M_contig107623.1620.1 vs. uniprot
Match: A0A7Y1ZXH0_9ACTN (AzlD domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZXH0_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 4.740e-8
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   16 IVLVVLAAGTFALKAAGPIVLGDRRLPDRVQRVIDLL 126
            +VL+VLAAGTF LKAAGP+ LG+R LP R+QRV+D+L
Sbjct:    6 LVLIVLAAGTFGLKAAGPLALGNRELPVRMQRVVDVL 42
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BLAST of mRNA_M-pyrifera_M_contig107623.1620.1 vs. uniprot
Match: A0A524MXD8_9ACTN (AzlD domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524MXD8_9ACTN)

HSP 1 Score: 48.5 bits (114), Expect = 4.350e-6
Identity = 22/36 (61.11%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   19 VLVVLAAGTFALKAAGPIVLGDRRLPDRVQRVIDLL 126
            VL+++  GT+ALK+AGP+VLGDR LP RV++++DLL
Sbjct:    7 VLIIMTIGTYALKSAGPLVLGDRVLPLRVRQIVDLL 42
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BLAST of mRNA_M-pyrifera_M_contig107623.1620.1 vs. uniprot
Match: UPI001C3D31F3 (AzlD domain-containing protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D31F3)

HSP 1 Score: 47.0 bits (110), Expect = 1.710e-5
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   31 LAAGTFALKAAGPIVLGDRRLPDRVQRVIDLL 126
            LAAGT+A+KAAGP+VLG RRLP  V R+ DLL
Sbjct:    9 LAAGTYAMKAAGPLVLGGRRLPPGVTRITDLL 40
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BLAST of mRNA_M-pyrifera_M_contig107623.1620.1 vs. uniprot
Match: UPI001C3D02AD (AzlD domain-containing protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D02AD)

HSP 1 Score: 45.4 bits (106), Expect = 6.700e-5
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   22 LVVLAAGTFALKAAGPIVLGDRRLPDRVQRVIDLL 126
            ++ LAAGT+ALKAAGP++LG R LP  V RV DLL
Sbjct:    6 ILALAAGTYALKAAGPLLLGGRELPGLVARVADLL 40
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BLAST of mRNA_M-pyrifera_M_contig107623.1620.1 vs. uniprot
Match: UPI00196109D0 (AzlD domain-containing protein n=1 Tax=Tenggerimyces flavus TaxID=1708749 RepID=UPI00196109D0)

HSP 1 Score: 45.4 bits (106), Expect = 7.100e-5
Identity = 21/37 (56.76%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   16 IVLVVLAAGTFALKAAGPIVLGDRRLPDRVQRVIDLL 126
            I +++LA GTF +KAAGP+VLG+R LP+R++ +I LL
Sbjct:    6 ITIILLAVGTFLIKAAGPLVLGERELPERLRSLIALL 42
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107623.1620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6C7E9Y4_ILUCY5.870e-968.29Uncharacterized protein n=1 Tax=Ilumatobacter cocc... [more]
A0A7Y1ZXH0_9ACTN4.740e-870.27AzlD domain-containing protein n=1 Tax=Ilumatobact... [more]
A0A524MXD8_9ACTN4.350e-661.11AzlD domain-containing protein n=1 Tax=Acidimicrob... [more]
UPI001C3D31F31.710e-571.88AzlD domain-containing protein n=1 Tax=Miltoncosta... [more]
UPI001C3D02AD6.700e-565.71AzlD domain-containing protein n=1 Tax=Miltoncosta... [more]
UPI00196109D07.100e-556.76AzlD domain-containing protein n=1 Tax=Tenggerimyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107623contigM-pyrifera_M_contig107623:494..619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.9339328-CDS-M-pyrifera_M_contig107623:493..6191622815585.9339328-CDS-M-pyrifera_M_contig107623:493..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107623 494..619 +
1692277475.6659937-CDS-M-pyrifera_M_contig107623:493..6191692277475.6659937-CDS-M-pyrifera_M_contig107623:493..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107623 494..619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107623.1620.1prot_M-pyrifera_M_contig107623.1620.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107623 494..619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107623.1620.1

>prot_M-pyrifera_M_contig107623.1620.1 ID=prot_M-pyrifera_M_contig107623.1620.1|Name=mRNA_M-pyrifera_M_contig107623.1620.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
VSDAAIVLVVLAAGTFALKAAGPIVLGDRRLPDRVQRVIDLL
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mRNA from alignment at M-pyrifera_M_contig107623:494..619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107623.1620.1 ID=mRNA_M-pyrifera_M_contig107623.1620.1|Name=mRNA_M-pyrifera_M_contig107623.1620.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=126bp|location=Sequence derived from alignment at M-pyrifera_M_contig107623:494..619+ (Macrocystis pyrifera P11B4 male)
GTGAGCGACGCTGCGATCGTTCTGGTCGTCCTGGCGGCGGGAACGTTCGC
GCTGAAGGCAGCGGGCCCGATCGTGCTCGGCGACCGCCGGCTTCCCGACC
GGGTGCAGCGCGTGATCGATCTGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107623:494..619+

>mRNA_M-pyrifera_M_contig107623.1620.1 ID=mRNA_M-pyrifera_M_contig107623.1620.1|Name=mRNA_M-pyrifera_M_contig107623.1620.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig107623:494..619+ (Macrocystis pyrifera P11B4 male)
GTGAGCGACGCTGCGATCGTTCTGGTCGTCCTGGCGGCGGGAACGTTCGC
GCTGAAGGCAGCGGGCCCGATCGTGCTCGGCGACCGCCGGCTTCCCGACC
GGGTGCAGCGCGTGATCGATCTGCTGGTGAGCGACGCTGCGATCGTTCTG
GTCGTCCTGGCGGCGGGAACGTTCGCGCTGAAGGCAGCGGGCCCGATCGT
GCTCGGCGACCGCCGGCTTCCCGACCGGGTGCAGCGCGTGATCGATCTGC
TG
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