mRNA_M-pyrifera_M_contig1076.1613.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1076.1613.1
Unique NamemRNA_M-pyrifera_M_contig1076.1613.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1076.1613.1 vs. uniprot
Match: D7G0R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R0_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.850e-23
Identity = 53/79 (67.09%), Postives = 68/79 (86.08%), Query Frame = 3 
Query:  216 TIDFYQYDLGEAVQPSELLQGLEMKPSVLAASLEKRLLPRAAKMRAAGIEPEFSRDFRSLAQLTDAQFRAWMGRLRVKI 452
            TIDF+Q+ +GE V+PS+L+ GLEMKPSVLAASL KRL+PRA++MR AGIEP F RD+R++AQLT+ QFRAWM R+  K+
Sbjct:  618 TIDFFQFGMGE-VEPSDLMDGLEMKPSVLAASLGKRLIPRASRMRRAGIEPNFLRDYRAIAQLTEPQFRAWMERMNEKL 695
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1076.1613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0R0_ECTSI1.850e-2367.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1076contigM-pyrifera_M_contig1076:199..4840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog2880.D7G0R0
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons4
Model size637
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1076.1613.1prot_M-pyrifera_M_contig1076.1613.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1076 3811..4706 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.513511-UTR-M-pyrifera_M_contig1076:198..2661622815585.513511-UTR-M-pyrifera_M_contig1076:198..266Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1076 199..266 +
1692277475.481369-UTR-M-pyrifera_M_contig1076:198..2661692277475.481369-UTR-M-pyrifera_M_contig1076:198..266Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1076 199..266 +
1622815585.5239801-UTR-M-pyrifera_M_contig1076:2159..23481622815585.5239801-UTR-M-pyrifera_M_contig1076:2159..2348Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1076 2160..2348 +
1692277475.491179-UTR-M-pyrifera_M_contig1076:2159..23481692277475.491179-UTR-M-pyrifera_M_contig1076:2159..2348Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1076 2160..2348 +
1622815585.5364256-UTR-M-pyrifera_M_contig1076:3783..38101622815585.5364256-UTR-M-pyrifera_M_contig1076:3783..3810Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1076 3784..3810 +
1692277475.5014603-UTR-M-pyrifera_M_contig1076:3783..38101692277475.5014603-UTR-M-pyrifera_M_contig1076:3783..3810Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1076 3784..3810 +
1622815585.577829-UTR-M-pyrifera_M_contig1076:4706..48401622815585.577829-UTR-M-pyrifera_M_contig1076:4706..4840Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1076 4707..4840 +
1692277475.523679-UTR-M-pyrifera_M_contig1076:4706..48401692277475.523679-UTR-M-pyrifera_M_contig1076:4706..4840Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1076 4707..4840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.555219-CDS-M-pyrifera_M_contig1076:3810..39481622815585.555219-CDS-M-pyrifera_M_contig1076:3810..3948Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1076 3811..3948 +
1692277475.5089872-CDS-M-pyrifera_M_contig1076:3810..39481692277475.5089872-CDS-M-pyrifera_M_contig1076:3810..3948Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1076 3811..3948 +
1622815585.5682075-CDS-M-pyrifera_M_contig1076:4625..47061622815585.5682075-CDS-M-pyrifera_M_contig1076:4625..4706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1076 4626..4706 +
1692277475.5163999-CDS-M-pyrifera_M_contig1076:4625..47061692277475.5163999-CDS-M-pyrifera_M_contig1076:4625..4706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1076 4626..4706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1076.1613.1

>prot_M-pyrifera_M_contig1076.1613.1 ID=prot_M-pyrifera_M_contig1076.1613.1|Name=mRNA_M-pyrifera_M_contig1076.1613.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MKPSVLAASLEKRLLPRAAKMRAAGIEPEFSRDFRSLAQLTDAQFRAWMG
RLRVKILEDKAAEAASHPSPLL*
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mRNA from alignment at M-pyrifera_M_contig1076:199..4840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1076.1613.1 ID=mRNA_M-pyrifera_M_contig1076.1613.1|Name=mRNA_M-pyrifera_M_contig1076.1613.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4642bp|location=Sequence derived from alignment at M-pyrifera_M_contig1076:199..4840+ (Macrocystis pyrifera P11B4 male)
GGTGGGTTCGGGATGCGTTAGGGTTGGATCGACCGGACGCCGCCGCAATT
CTCCGGAGATGTCCCCAGGTAGGCACACCAAGCAAGGCCACATGAGCACA
TCGCCCGACACAATAAGTATCTTGAACTTTTTTTTTTCATGAACATTGCG
GCATCTCCTTTTTGTTCAGCGGCGAAATCGATCCAGGCGTTTGTGTGATG
TTGCTTCGTCTCTTTCGGCCGTCGAGAGTTTCGATGCAGGGGCCCCGCGA
GGTCCAACGCTACGATTCTTCGACCTGTGGCTTCTTTCTTTTTTTGCGAG
AGAGCGACAAGGAGGCACGCCGCCCGTTATTAAAAAAAAAAAACGTTTTT
AAATTTTCGTTGTGTCTTCTGTTTTTTTTTTTTGTTTTTTTTTTCTGTGG
CGACTCGACCCAAGCGGTTTTTTGTGGTGTCGAGTCTCCTCCTTTGCTTG
TCGAGGCTCTCGATGCAGAGGCTCTCCACGACGCCCGATGCTATGATTGT
CCGGATGATGACCCTTTTTGGTTTCGTACGCTCACTAAACGAAGCCAAAG
AACGATGCACCGTCCGCTATTGAAGAACGCGGTTTTGGTACTGCGGCGTT
GTCTCGTTGTCCAGTCGCGACTCGATCCAGGGGGTTCGGTATGGCTGCGC
TGTCTACATGGATCGTCGAGGCCCTCGATGCAGAGGCTCCACGAGGTTCT
ACGCGACGTGTCCTTGTTTTTTGTACGCGAGCCGAAGGACGGCATTGGAG
TGCATACCACCCGCTATCTCAAAACGGGGTGCATCGTTCCGTCGTCTCTT
TGATGCAGATGTTTTTTAATCCAAATTTCGCGCTTTCTGTTGCATCCGTC
AAGGCTCGACGAAGAGGCCCCGCGAGTCCCGGCCCTGCGATTCTCCTGCG
GAATGTCGATTTTTTTGTGTGCTGATCGAAGAACGACATACGTAGAGGGG
TGCACCGCCCGCCATTAAAACGAAACGGCTTTCCGTTCATGCATCGTCTC
TTTCGCCCGTCGCGGCTCGATGGAGGCAGGTTTGTGTTGTCGCGTCGTCT
CTCTTTCCCGTCGCAGCTCTCGATGCGGGGGGGGGTAGCAAATGGCCCCG
CGCTACAATTCTCAGTCCTCTTTTTCAGTGCGCAAACCAAATTTTGACAT
ATAGAGGGTGCATGGCCCGCCATGAAAAAACTTTTTTTTTTATAATCGTT
GCGTCGTCTCTTTTTCCTGTCACGCATGGACGCAGCCGCCCCCCCCCCGC
CCTGCAAGTATGAGGGTCGACGAAAATCCTTGATCTCAGTTTTCTTTCTT
TTTCATATTTTTTCCTCCGGAGGATGTCCTTTCTCAGGTGCAGCACTACC
GTCCCTCTAAAAACAAGATACAAGTCGGATATTTTGGTCTCTAGAAGAAA
GCGCGATGCCGGCCGGGTCTAAACCTCTCGGTATTGAGGAAAAAAATGGC
TTTGTTCCACGCTAGCTTTTGTGTTTTCACCGGAAAATTTGCGTTCGCCG
GAAATTTCCTTTTCGCTTGCACTACTGCTGCGCACTCGCGGATTGTCTAC
TGTAGACGGCTGCTAGCTACGAACCTGACTGACTTGGCACCGCTGCTGTG
ATTTGCTCCCACCACCGGGCGTAAATAGAAGCAACTTTTAAACTGTCTCG
TACCGGTAGACGTTTTTGAGGAAACCAAACGTTCTTGTTTGTTTTGTTTG
TTTTTTGTGTATCCTGCTTGCACTGCTGTGCGTTCGCGTTTCGTATGCAG
ACGATTGCTGTATATTCCCGAGTATGTGCTGTTACGGGGGTCTATAGTTA
ACAGGACCTATGACATACATAAAAACCTATATATTTAGGTATTTTTACTA
ACAATATTTGGTCCTGTTTACTATGGTCCCCCGTAATACCAATCGTTTTT
TTTTTTTTTTTTTCATCCTAAAGCCCTACTGACTACACCCGCCACCTCTC
CCTGCCCGCAGATATTTGGGTCCAGCCTTAAGGACACCCTCGAGCCGAAG
CTTTCGTGGCTTACCGTGCGACTGCAGACGACCAAGGACAGAATAGCCGC
CGTGGTCAAGAAGTACCCTCAGATCTTGGTGTACAGCATTGAGAACAACT
TGGCCCCAACTATCGACTTCTACCAGTACGACTTGGGCGAAGCGGTGCAG
GTGTGTGTGTGTGTTTTGTGAATTTGTTTGGTGCGTTAGGGTGTGTTTTT
TTGTTTTTTTGTTTCGTTGTTGTTTTTTCGTTTCCGTTTTTTGTTTTGTG
TCTATTTTGCTTGTGTTTGCGTGTAAATTCTTGTTTGTAATCGTGTTTCT
GTGCGTAACTTTTTTTTTGCACTGTTTAGTTTGTATTCGTGTTTCTGTAC
GTATTTTTTTTTCTGTGTACGCGGTTTTCTCAGCGCTGGGAACAACTTGG
CTTTAACCGTTTGAGTCTGCCAGTATGACGTGGTGCGAAAACGCGCAGGA
AAGCTTGTTTTTGTTTTTGAATGTGTGCTTCTTAGGGTTTTTTTTTTCGT
CTCGTTGTCATTTGTCGTGTTGTGGTTGGGTTCGTTTCGGGGGACCCATG
TTCTTTTTTTTTCTTGTCGGTGGACATGTTTAGTTTGTGTGTGTGTTTTT
TTTTCAATCAGTTCGTGTTGTTGTTCTGCCGTCTGTGCTCGTTTTGTTTC
CGTATTGGACCCTTTTGCGTTCGATGTCCTTTTGGTGTTCTTGGTATCAC
TCTTGCCGTAAATAAAATCACAGTATAGTCTCTGATATCAATATCAAACG
TATCTTATATTATCGGCCGAAATGATTTTTGTTTTTTGTGTGCTTCATGT
TTTCGGTGCACGTTTTTTCAAACGCTTCAACTCTTAACCCTTTGACCTTT
TTTTTTTTTTTGCGTAAAATTCCCAATGACCCTCGGGCCCATCACGCCGT
TTCCGTCTTTTCCCGGCTGACCCCCGACGAAAATATTTCAACTGCACTGC
TGCGAGGTCTTTAAGATGATTTGTTTCGTTTCAGCTACGTAACACCGTTG
TTGATGAATGAGTGCAAAAAAACGCCAGCTGCGACATCGCGATTATTCGA
AATCAATGCGTTGTTTTTTGTATTCCGTACCATGTCACTCGCGGGTGCGT
CGGCTAACGTTTGTGTGTCTTAATTTTTCTTCACACACCCATCCCGACGT
ATTTTATTTTCTTTAGAATAAAACTATCGACACGTTTCTTAACCCTTTTG
CGACTGCAGTCTCGTTTTGGGGACAAAACTTGCAGCACTGAAGGAGTTGA
AGAGCTATGGGCTCGACTTCCCCTCCGAAATCTTTTTATTTTATTATTTT
TTTTATTTTTTTCCGGCTAACTTGATATCGGTACGTGTAACACTTGGTAG
ATGTGTGATCTGCCCGGCCGGTCGCGAGCTGAACTATTCGCTAGCTCTTC
GCTGGCTGTTCGTTGTTTTATTCAACCTTTTTCTTTGCCCAACGACTATG
GGAGAAGGGGCGTTCCTGTCCGATCGGGCTGCGCGCTGCGTGCGTGTGTA
CCGTTTTTCCGTTTTGTTTTTGGGCTGCACGTCTTATCGGTTTGTGTCCT
CTCCGTTTTTTTCTTCGTTTTCTTTGCCTGTAAAGCCTTCCGAGCTCCTG
CAAGGGCTGGAGATGAAACCGTCAGTTCTTGCGGCGAGTCTGGAGAAGAG
GCTCCTGCCGAGGGCGGCCAAGATGAGAGCAGCGGGCATCGAGCCCGAAT
TTTCCAGGGACTTCCGCTCTCTTGCTCAGCTGACGGATGCTCAGTTTCGG
GTAAGAGAAGGTATCCGTGCTAGGGAAAACAAAAACGACGCAATACTTTT
TATTCCTTGGGAGTCCAGAGCATGGAGGGGGGGGGGTATTTTATCATGTA
CCTGGTATAGGTGAAACCAAGTAGACATGATCCAGTTTTTTTTTGTTCAA
CACCCAAAAATCTCACCATGCTGACTTTTTGAAGGAGTGTACGTCGGTCT
TTGCCTCTTTTTGTTCGTGTACTTTCGTTTGTTTGTTTTTTTCCCTCGCA
AACGGTTTTGGCGTGGCGGGCCCCTCGAATCAGCCAACTCGCAGCGCTAA
TGGTTTACGCCCAACCCCCCCCCTCCCCCCTGTCTCATACGACTACGCTC
GTGGATGACATGAATACATCCCTCTGTCTTTTGAAAGGGCCTCACCAGAA
AACAAAACTAATTCATTCGATGCTGCCATCAGTATGCAAGGAAGTCCCCC
TCAAACGCGGTTCTCAGTAGGATGCAGCTCGCTCTTCGTGCGAGTCGCCC
AACATCTCACGGCGCTTCGCGCCTGGTGGAAGCAATGCCTGTCTGGTCGT
TGAAAACCCGGCATTTGTACAGATACGACGGCCTTTGTAGTCATGTGGCT
CACAGCTATGCATGACATGAGTACCCCCTCCCCCCCCCCCCGACCCTCCG
CCTTCATCTGTATGCCCTCTGCGCCAGGCATGGATGGGGAGATTGAGGGT
GAAGATATTAGAGGACAAGGCTGCGGAAGCGGCGAGTCACCCTTCTCCTC
TCCTCTAGTAGTAGGCTGCCTCTGAATACGAACGGGCATCCCACGTCGGG
GAGAAGGGGGAGGGGAGGATACTCATTAGTTGGCTGACATACTGTCAGTC
ACTTGACCATTGACCACGGACCCTTTCCGAGAAGGACCGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1076:199..4840+

>mRNA_M-pyrifera_M_contig1076.1613.1 ID=mRNA_M-pyrifera_M_contig1076.1613.1|Name=mRNA_M-pyrifera_M_contig1076.1613.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig1076:199..4840+ (Macrocystis pyrifera P11B4 male)
ATGAAACCGTCAGTTCTTGCGGCGAGTCTGGAGAAGAGGCTCCTGCCGAG
GGCGGCCAAGATGAGAGCAGCGGGCATCGAGCCCGAATTTTCCAGGGACT
TCCGCTCTCTTGCTCAGCTGACGGATGCTCAGTTTCGGATGAAACCGTCA
GTTCTTGCGGCGAGTCTGGAGAAGAGGCTCCTGCCGAGGGCGGCCAAGAT
GAGAGCAGCGGGCATCGAGCCCGAATTTTCCAGGGACTTCCGCTCTCTTG
CTCAGCTGACGGATGCTCAGTTTCGGGCATGGATGGGGAGATTGAGGGTG
AAGATATTAGAGGACAAGGCTGCGGAAGCGGCGAGTCACCCTTCTCCTCT
CCTCTAGGCATGGATGGGGAGATTGAGGGTGAAGATATTAGAGGACAAGG
CTGCGGAAGCGGCGAGTCACCCTTCTCCTCTCCTCTAG
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