mRNA_M-pyrifera_M_contig107510.1603.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107510.1603.1
Unique NamemRNA_M-pyrifera_M_contig107510.1603.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107510.1603.1 vs. uniprot
Match: A0A6I6A712_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A712_9PLAN)

HSP 1 Score: 389 bits (1000), Expect = 1.370e-134
Identity = 191/205 (93.17%), Postives = 197/205 (96.10%), Query Frame = 1 
Query:    1 LGFVFFAFLVLLLLPYQLANRRFLHATEAVLPEVPRTPLLIASPYANGAITHELEQTPSGIVLKPLDNPYGRMLWFGCLWPLFTGVVMITLVWMHATFAGLALFWKAFITLDLCLTVAIYVWFVRRAFRDPPQGLATVEINQLEKTCVITSADESISLDVDQIIAVQLCAAWLKIEDLDHQDEDYDNKHMRADIELNLVWRDPPV 615
            LGFVFFAFLVLLLLPYQL NRRFLHATEAVLPEVPRTPLLIA+P ANGAITHELEQTPSGIVLKPLDNPYGRMLWFGCLWPLFTGVVMI LVW HATFA LALFWKAFI LDLCLTV IY+WFVRRAFRDPPQGLATVEI+QLEKTCV+TSADESISLDVDQIIAVQLCAAWLKIEDLDHQDEDYDNKHMRA+IELNLVWR+ PV
Sbjct:   67 LGFVFFAFLVLLLLPYQLVNRRFLHATEAVLPEVPRTPLLIATPCANGAITHELEQTPSGIVLKPLDNPYGRMLWFGCLWPLFTGVVMIALVWTHATFADLALFWKAFIALDLCLTVVIYMWFVRRAFRDPPQGLATVEIDQLEKTCVMTSADESISLDVDQIIAVQLCAAWLKIEDLDHQDEDYDNKHMRAEIELNLVWRERPV 271
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BLAST of mRNA_M-pyrifera_M_contig107510.1603.1 vs. uniprot
Match: A0A517WA42_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WA42_9PLAN)

HSP 1 Score: 381 bits (978), Expect = 3.030e-131
Identity = 190/206 (92.23%), Postives = 195/206 (94.66%), Query Frame = 1 
Query:    1 LGFVFFAFLVLLLLPYQLANRRFLHATEAVLPEVPRTPLLIASPYANGAITHELEQTPSGIVLKPLDNPYGRMLWFGCLWPLFTGVVMITLVWMHATFAGLALFWKAFITLDLCLTVAIYVWFVRRAFRDPPQGLATVEINQLEKTCVITSADESISLDVDQIIAVQLCAAWLKIEDLDHQDEDYDNKHMRADIELNLVWRDPPVT 618
            LGFVFFAFLVLLLLPYQLANR FLHATEAVLPEVPRTPLLIA+PYANGAITHEL QTPSGIVLKP DNP GRMLWFGCLWPLFTGVVMI LVW HATFA LALFWKAFITLDLCLTVAIYVWFVRRAFRD PQGLATVEINQLEKTCVI+SADESISLDVDQ+IAVQLCAAWLKIEDLDHQ EDYDNKH RA+IELNLVWR+ PVT
Sbjct:   67 LGFVFFAFLVLLLLPYQLANRCFLHATEAVLPEVPRTPLLIATPYANGAITHELVQTPSGIVLKPRDNPNGRMLWFGCLWPLFTGVVMIALVWTHATFADLALFWKAFITLDLCLTVAIYVWFVRRAFRDSPQGLATVEINQLEKTCVISSADESISLDVDQMIAVQLCAAWLKIEDLDHQGEDYDNKHGRAEIELNLVWRERPVT 272
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BLAST of mRNA_M-pyrifera_M_contig107510.1603.1 vs. uniprot
Match: A0A518A426_9PLAN (Uncharacterized protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A426_9PLAN)

HSP 1 Score: 297 bits (761), Expect = 3.190e-98
Identity = 150/206 (72.82%), Postives = 166/206 (80.58%), Query Frame = 1 
Query:    1 LGFVFFAFLVLLLLPYQLANRRFLHATEAVLPEVPRTPLLIASPYANGAITHELEQTPSGIVLKPLDNPYGRMLWFGCLWPLFTGVVMITLVWMHATFAGLALFWKAF----ITLDLCLTVAIYVWFVRRAFRDPPQGLATVEINQLEKTCVITSADESISLDVDQIIAVQLCAAWLKIEDLDHQDEDYDNKHMRADIELNLVWRD 606
            L F FFA LVLLLLP QLANRRFLHA   VLPEVPRTPLLIASPYANGAITHEL QTPS IVL+P  NPYG + WFG LWP+FTGVVMI LVW  A FA L  FWK F    +TL LCL V+I+VW V RAFRDPP+GLA VEI+QL KTCVIT   ES+++DV QI+AVQLCAAWLKIEDLDH+D+DYDNK    ++ELNLVWRD
Sbjct:   67 LVFAFFALLVLLLLPSQLANRRFLHAAAEVLPEVPRTPLLIASPYANGAITHELVQTPSSIVLQPRANPYGGLPWFGYLWPIFTGVVMIMLVWTPAFFADLDFFWKYFWKTVLTLGLCLNVSIFVWIVSRAFRDPPEGLAVVEIDQLRKTCVITREGESMTIDVRQILAVQLCAAWLKIEDLDHEDDDYDNKQSHGEVELNLVWRD 272
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107510.1603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6I6A712_9PLAN1.370e-13493.17Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517WA42_9PLAN3.030e-13192.23Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A518A426_9PLAN3.190e-9872.82Uncharacterized protein n=4 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107510contigM-pyrifera_M_contig107510:1..618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size618
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.1191714-CDS-M-pyrifera_M_contig107510:0..6181622815585.1191714-CDS-M-pyrifera_M_contig107510:0..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107510 1..618 +
1692277475.3558705-CDS-M-pyrifera_M_contig107510:0..6181692277475.3558705-CDS-M-pyrifera_M_contig107510:0..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107510 1..618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107510.1603.1prot_M-pyrifera_M_contig107510.1603.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107510 1..618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107510.1603.1

>prot_M-pyrifera_M_contig107510.1603.1 ID=prot_M-pyrifera_M_contig107510.1603.1|Name=mRNA_M-pyrifera_M_contig107510.1603.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp
LGFVFFAFLVLLLLPYQLANRRFLHATEAVLPEVPRTPLLIASPYANGAI
THELEQTPSGIVLKPLDNPYGRMLWFGCLWPLFTGVVMITLVWMHATFAG
LALFWKAFITLDLCLTVAIYVWFVRRAFRDPPQGLATVEINQLEKTCVIT
SADESISLDVDQIIAVQLCAAWLKIEDLDHQDEDYDNKHMRADIELNLVW
RDPPVT
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mRNA from alignment at M-pyrifera_M_contig107510:1..618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107510.1603.1 ID=mRNA_M-pyrifera_M_contig107510.1603.1|Name=mRNA_M-pyrifera_M_contig107510.1603.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig107510:1..618+ (Macrocystis pyrifera P11B4 male)
CTGGGCTTTGTTTTCTTCGCGTTTCTCGTGCTGCTGTTGCTTCCTTATCA
ACTGGCGAATCGGCGCTTCCTGCACGCGACTGAAGCGGTGCTGCCTGAGG
TTCCCCGTACGCCGCTCTTGATTGCCAGTCCCTACGCCAACGGCGCGATC
ACCCATGAACTGGAGCAGACACCGTCGGGTATTGTGCTCAAGCCCCTCGA
TAATCCGTATGGAAGGATGCTCTGGTTTGGCTGTTTGTGGCCTCTGTTTA
CGGGAGTGGTGATGATCACGCTGGTCTGGATGCATGCCACGTTCGCGGGT
CTGGCGCTGTTCTGGAAAGCGTTCATTACCCTGGACCTGTGTCTGACTGT
TGCGATCTATGTGTGGTTTGTCCGTCGCGCGTTTCGTGATCCGCCGCAAG
GACTGGCCACGGTCGAAATCAATCAACTGGAAAAGACCTGTGTCATTACG
AGCGCTGATGAATCGATTTCGCTTGATGTGGATCAGATTATTGCCGTGCA
GCTCTGTGCCGCCTGGCTGAAGATCGAGGATCTCGATCATCAGGACGAGG
ACTACGACAATAAACATATGCGGGCGGATATCGAACTCAACCTGGTCTGG
CGGGACCCGCCGGTTACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107510:1..618+

>mRNA_M-pyrifera_M_contig107510.1603.1 ID=mRNA_M-pyrifera_M_contig107510.1603.1|Name=mRNA_M-pyrifera_M_contig107510.1603.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1236bp|location=Sequence derived from alignment at M-pyrifera_M_contig107510:1..618+ (Macrocystis pyrifera P11B4 male)
CTGGGCTTTGTTTTCTTCGCGTTTCTCGTGCTGCTGTTGCTTCCTTATCA
ACTGGCGAATCGGCGCTTCCTGCACGCGACTGAAGCGGTGCTGCCTGAGG
TTCCCCGTACGCCGCTCTTGATTGCCAGTCCCTACGCCAACGGCGCGATC
ACCCATGAACTGGAGCAGACACCGTCGGGTATTGTGCTCAAGCCCCTCGA
TAATCCGTATGGAAGGATGCTCTGGTTTGGCTGTTTGTGGCCTCTGTTTA
CGGGAGTGGTGATGATCACGCTGGTCTGGATGCATGCCACGTTCGCGGGT
CTGGCGCTGTTCTGGAAAGCGTTCATTACCCTGGACCTGTGTCTGACTGT
TGCGATCTATGTGTGGTTTGTCCGTCGCGCGTTTCGTGATCCGCCGCAAG
GACTGGCCACGGTCGAAATCAATCAACTGGAAAAGACCTGTGTCATTACG
AGCGCTGATGAATCGATTTCGCTTGATGTGGATCAGATTATTGCCGTGCA
GCTCTGTGCCGCCTGGCTGAAGATCGAGGATCTCGATCATCAGGACGAGG
ACTACGACAATAAACATATGCGGGCGGATATCGAACTCAACCTGGTCTGG
CGGGACCCGCCGGTTACCCTGGGCTTTGTTTTCTTCGCGTTTCTCGTGCT
GCTGTTGCTTCCTTATCAACTGGCGAATCGGCGCTTCCTGCACGCGACTG
AAGCGGTGCTGCCTGAGGTTCCCCGTACGCCGCTCTTGATTGCCAGTCCC
TACGCCAACGGCGCGATCACCCATGAACTGGAGCAGACACCGTCGGGTAT
TGTGCTCAAGCCCCTCGATAATCCGTATGGAAGGATGCTCTGGTTTGGCT
GTTTGTGGCCTCTGTTTACGGGAGTGGTGATGATCACGCTGGTCTGGATG
CATGCCACGTTCGCGGGTCTGGCGCTGTTCTGGAAAGCGTTCATTACCCT
GGACCTGTGTCTGACTGTTGCGATCTATGTGTGGTTTGTCCGTCGCGCGT
TTCGTGATCCGCCGCAAGGACTGGCCACGGTCGAAATCAATCAACTGGAA
AAGACCTGTGTCATTACGAGCGCTGATGAATCGATTTCGCTTGATGTGGA
TCAGATTATTGCCGTGCAGCTCTGTGCCGCCTGGCTGAAGATCGAGGATC
TCGATCATCAGGACGAGGACTACGACAATAAACATATGCGGGCGGATATC
GAACTCAACCTGGTCTGGCGGGACCCGCCGGTTACC
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