mRNA_M-pyrifera_M_contig107501.1599.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107501.1599.1
Unique NamemRNA_M-pyrifera_M_contig107501.1599.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107501.1599.1 vs. uniprot
Match: A0A067BPS3_SAPPC (DRMBL domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BPS3_SAPPC)

HSP 1 Score: 63.5 bits (153), Expect = 3.590e-9
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    1 GDFRFLPTLH-----TPLLHS-LRTDTVFLDTTYARHPLRHFPSQYAATQAVREIVLRYGGDPGVLFVFGAYVIGKEMLWMEAADALKEKVFVDGRRKKAMDDMHDLCIITP-TQHSRITTDSTSARIRVLPMRALTLTNLQSLL 414
            GDFR+ P++      +P  +S  R D V+LDTTY      H     A  +A R + L     P  LF+ G+Y IGKE L+M+ A  L  KVFV+  +   +      C   P T+  R+TT+S++  + V+PM  L    +++LL
Sbjct:   29 GDFRYDPSMLLNRYLSPFTNSNQRLDGVYLDTTYCXTQHCHPTQAVAIAEAKRLVDLHQNDRP--LFLVGSYSIGKERLFMDVAAHLDCKVFVERAKLSLLS-----CFEWPETELRRLTTESSTTNLHVVPMNHLNFDGMRALL 166          
BLAST of mRNA_M-pyrifera_M_contig107501.1599.1 vs. uniprot
Match: A0A7S1Y4I3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y4I3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.140e-7
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    1 GDFRFLPTLHTPLLHS---------LRTDTVFLDTTYARHPLRHFPSQYAATQAVREIVLRY-----GGDPGVLFVFGAYVIGKEMLWMEAADALKEKVFVDGRR 273
            GDFR+     T L HS         +R + +FLDTTY   P    P+Q  A +A  E VLR           +LF+FGAY IGKE +++  A+ L  KV+VD RR
Sbjct:  151 GDFRW--NKETMLQHSALRAFSTVQVRLNELFLDTTYC-DPKYDLPTQQQAIEAATEAVLREIERARRTKQRILFLFGAYTIGKERIYLSVAERLDCKVYVDRRR 252          
BLAST of mRNA_M-pyrifera_M_contig107501.1599.1 vs. uniprot
Match: UPI001EDEC49A (DNA cross-link repair 1A protein-like n=2 Tax=Daphnia TaxID=6668 RepID=UPI001EDEC49A)

HSP 1 Score: 56.2 bits (134), Expect = 2.760e-6
Identity = 46/146 (31.51%), Postives = 73/146 (50.00%), Query Frame = 1
Query:    1 GDFRFLPTLHTPLLHSLRT---DTVFLDTTYARHPLRHFPSQYAATQAVREIVLRYGGD-PGVLFVFGAYVIGKEMLWMEAADALKEKVFVDGRRKKAMDDMHDLCIITPTQHSRITTDSTSARIRVLPMRALTLTNLQSLLKSLS 426
            GDFR  P++    L+ L+    D ++LDTTY        P+Q      +R +V RY      +L + G Y IGKE ++M AA+ L  KV+    +++ ++ + D  I      SR+ T    A + V+ M  +   NL++ L SLS
Sbjct:  607 GDFRAHPSMER--LYELKQRPIDELYLDTTYCDEHYE-LPAQEEVLSYIRRLVRRYAFKYQKLLVICGTYTIGKEKVFMMAAEELNSKVWAPTEKRRILNCLDDSKI-----SSRLATSPLEASVHVVNMGDVKPANLKNYLDSLS 744          
BLAST of mRNA_M-pyrifera_M_contig107501.1599.1 vs. uniprot
Match: E9FWN3_DAPPU (Lactamase_B domain-containing protein n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9FWN3_DAPPU)

HSP 1 Score: 55.8 bits (133), Expect = 3.080e-6
Identity = 46/146 (31.51%), Postives = 73/146 (50.00%), Query Frame = 1
Query:    1 GDFRFLPTLHTPLLHSLRT---DTVFLDTTYARHPLRHFPSQYAATQAVREIVLRYGGD-PGVLFVFGAYVIGKEMLWMEAADALKEKVFVDGRRKKAMDDMHDLCIITPTQHSRITTDSTSARIRVLPMRALTLTNLQSLLKSLS 426
            GDFR  P++    L+ L+    D ++LDTTY        P+Q      +R +V RY      +L + G Y IGKE ++M AA+ L  KV+    +++ ++ + D  I      SR+ T    A + V+ M  +   NL++ L SLS
Sbjct:  119 GDFRAHPSMER--LYELKQRPIDELYLDTTYCDEHYE-LPAQEEVLSYIRRLVRRYALKYQKLLVICGTYTIGKEKVFMMAAEELNSKVWAPTEKRRILNCLDDSKI-----SSRLATSPLEASVHVVNMGDVKPANLKNYLDSLS 256          
BLAST of mRNA_M-pyrifera_M_contig107501.1599.1 vs. uniprot
Match: A0A8J2WDB0_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WDB0_9CRUS)

HSP 1 Score: 55.8 bits (133), Expect = 3.760e-6
Identity = 43/145 (29.66%), Postives = 68/145 (46.90%), Query Frame = 1
Query:    1 GDFRFLPTLHTPLLHSLRT---DTVFLDTTYARHPLRHFPSQYAATQAVREIVLRYGGDPGVLFVF-GAYVIGKEMLWMEAADALKEKVFVDGRRKKAMDDMHDLCIITPTQHSRITTDSTSARIRVLPMRALTLTNLQSLLKSL 423
            GDFR  P++    L+ L+    D ++LDTTY        PSQ      +R +V RY      L V  G Y IGKE ++M AA+ L  K++    +++ ++     C+  P    R+  +   A + V  M  +   NL+  L +L
Sbjct:  624 GDFRAHPSMER--LYELKQRPIDDLYLDTTYCDEHYE-LPSQEEVLSYIRRLVRRYASKHQKLLVISGTYTIGKEKVFMAAAEELNSKIWAPTEKRRVLN-----CLDDPVLSGRLIANPLEASVHVANMGDVKPANLKKYLDNL 760          
BLAST of mRNA_M-pyrifera_M_contig107501.1599.1 vs. uniprot
Match: A0A0P5DK33_9CRUS (DNA cross-link repair 1A protein n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5DK33_9CRUS)

HSP 1 Score: 55.5 bits (132), Expect = 5.090e-6
Identity = 44/145 (30.34%), Postives = 71/145 (48.97%), Query Frame = 1
Query:    1 GDFRFLPTLHTPLLHSLRT---DTVFLDTTYARHPLRHFPSQYAATQAVREIVLRYGGD-PGVLFVFGAYVIGKEMLWMEAADALKEKVFVDGRRKKAMDDMHDLCIITPTQHSRITTDSTSARIRVLPMRALTLTNLQSLLKSL 423
            GDFR  P++    L+ L+    D ++LDTTY        P+Q      +R +V RY      +L V G Y IGKE ++M AA+ L  KV+    +++ ++ + D  I       R++ D   A + V+ M  +   NL+  L +L
Sbjct:  593 GDFRAHPSMER--LYELKQRPIDELYLDTTYCDEHYE-LPAQEEVLSYIRRLVRRYANKHQKLLVVSGTYTIGKEKVFMTAAEELNSKVWAPTEKRRILNCLEDFEI-----SDRLSNDPLEAGVHVVNMGDIKPANLKQYLDNL 729          
BLAST of mRNA_M-pyrifera_M_contig107501.1599.1 vs. uniprot
Match: A0A3B0K8G3_DROGU (Blast:DNA cross-link repair protein SNM1 n=2 Tax=obscura subgroup TaxID=32357 RepID=A0A3B0K8G3_DROGU)

HSP 1 Score: 53.9 bits (128), Expect = 1.710e-5
Identity = 38/130 (29.23%), Postives = 66/130 (50.77%), Query Frame = 1
Query:    1 GDFRFLPTLHT-PLL-HSLRTDTVFLDTTYARHPLRHFPSQYAATQAVREIVLRYGGDPG--VLFVFGAYVIGKEMLWMEAADALKEKVFVDGRRKKAMDDMHDLCIITPTQHSRITTDSTSARIRVLPM 378
            GDFR    + + P+  +++  D ++LDTTY            + ++ +  +   +  +PG  +L+V GAYVIGKE +W+  A     KV+ +  R+ A+D     C+  P   +R+T D   A + V+ M
Sbjct:  413 GDFRASFEMESLPIFWNNIDIDLLYLDTTYLSESYDFCHQTESVSRLLHLVQNFHERNPGKRILYVCGAYVIGKEKIWLALAKKFCLKVWTEAHRRVAID-----CLEWPELQTRMTADPYQANLHVIAM 537          
BLAST of mRNA_M-pyrifera_M_contig107501.1599.1 vs. uniprot
Match: A0A7R9RG15_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9RG15_9CRUS)

HSP 1 Score: 53.5 bits (127), Expect = 2.220e-5
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 1
Query:    1 GDFRFLPTLHT-PLLHSLRTDTVFLDTTYARHPLRHFPSQYAATQAVREIV----LRYGGDPGVLFVFGAYVIGKEMLWMEAADALKEKVFVDGRRKKAMDDMHDLCIITPTQHSRITTDSTSARIRVLPMRALTLTNL 402
            GDFR    L   P L +   D ++LDTT        FPSQ    + VR IV    + YG    +L V G Y IGKE +++ AA+ L  K++    + + +  + D  +        +T D   AR+ VLPM+ L +T L
Sbjct:  336 GDFRAENFLQRHPFLLNKNIDVLYLDTTXXXXXXC-FPSQSEVLEHVRSIVNNAMVIYGN---ILIVCGTYTIGKEKVFLAAAETLGSKIWAPKWKVQILRCLEDRYL-----EFLLTEDPNLARVHVLPMKQLNITEL 465          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107501.1599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A067BPS3_SAPPC3.590e-934.48DRMBL domain-containing protein n=1 Tax=Saprolegni... [more]
A0A7S1Y4I3_9STRA5.140e-740.00Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
UPI001EDEC49A2.760e-631.51DNA cross-link repair 1A protein-like n=2 Tax=Daph... [more]
E9FWN3_DAPPU3.080e-631.51Lactamase_B domain-containing protein n=1 Tax=Daph... [more]
A0A8J2WDB0_9CRUS3.760e-629.66Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
A0A0P5DK33_9CRUS5.090e-630.34DNA cross-link repair 1A protein n=2 Tax=Daphnia m... [more]
A0A3B0K8G3_DROGU1.710e-529.23Blast:DNA cross-link repair protein SNM1 n=2 Tax=o... [more]
A0A7R9RG15_9CRUS2.220e-533.09Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107501contigM-pyrifera_M_contig107501:7..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue3.4e-13
Seed eggNOG ortholog130081.XP_005704885.1
KEGG koko:K15340
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000715,GO:0000723,GO:0000726,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008409,GO:0009987,GO:0016043,GO:0016233,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0031848,GO:0031974,GO:0031981,GO:0032200,GO:0033554,GO:0034641,GO:0035312,GO:0036297,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0098687,GO:0140097,GO:1901360,GO:1901363
EggNOG free text desc.protection from non-homologous end joining at telomere
EggNOG OGsCOG1236@1,KOG1361@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.8393147-CDS-M-pyrifera_M_contig107501:6..4681622815584.8393147-CDS-M-pyrifera_M_contig107501:6..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107501 7..468 +
1692277475.2032928-CDS-M-pyrifera_M_contig107501:6..4681692277475.2032928-CDS-M-pyrifera_M_contig107501:6..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107501 7..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107501.1599.1prot_M-pyrifera_M_contig107501.1599.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107501 7..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107501.1599.1

>prot_M-pyrifera_M_contig107501.1599.1 ID=prot_M-pyrifera_M_contig107501.1599.1|Name=mRNA_M-pyrifera_M_contig107501.1599.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
GDFRFLPTLHTPLLHSLRTDTVFLDTTYARHPLRHFPSQYAATQAVREIV
LRYGGDPGVLFVFGAYVIGKEMLWMEAADALKEKVFVDGRRKKAMDDMHD
LCIITPTQHSRITTDSTSARIRVLPMRALTLTNLQSLLKSLSHPLSTSQS
SRPT
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mRNA from alignment at M-pyrifera_M_contig107501:7..468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107501.1599.1 ID=mRNA_M-pyrifera_M_contig107501.1599.1|Name=mRNA_M-pyrifera_M_contig107501.1599.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig107501:7..468+ (Macrocystis pyrifera P11B4 male)
GGTGATTTTCGATTCCTCCCAACACTCCACACTCCTCTCCTTCACTCACT TCGCACCGACACCGTCTTCCTTGACACAACCTACGCCAGACACCCATTGC GTCATTTTCCATCTCAATACGCAGCAACGCAAGCTGTGAGAGAAATCGTG TTGCGATATGGAGGTGATCCTGGTGTATTGTTTGTGTTCGGAGCCTATGT CATTGGGAAAGAAATGCTGTGGATGGAGGCGGCAGATGCATTGAAAGAAA AAGTGTTTGTAGATGGCAGGCGGAAAAAGGCAATGGATGATATGCACGAC CTCTGCATCATCACTCCAACCCAGCACTCTCGTATCACAACAGATTCAAC TTCTGCTCGAATTCGTGTCCTTCCAATGCGAGCACTCACCCTCACCAATC TCCAATCTCTCCTCAAGTCTCTGTCGCATCCCCTCTCAACAAGTCAATCC TCTCGTCCAACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107501:7..468+

>mRNA_M-pyrifera_M_contig107501.1599.1 ID=mRNA_M-pyrifera_M_contig107501.1599.1|Name=mRNA_M-pyrifera_M_contig107501.1599.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig107501:7..468+ (Macrocystis pyrifera P11B4 male)
GGTGATTTTCGATTCCTCCCAACACTCCACACTCCTCTCCTTCACTCACT
TCGCACCGACACCGTCTTCCTTGACACAACCTACGCCAGACACCCATTGC
GTCATTTTCCATCTCAATACGCAGCAACGCAAGCTGTGAGAGAAATCGTG
TTGCGATATGGAGGTGATCCTGGTGTATTGTTTGTGTTCGGAGCCTATGT
CATTGGGAAAGAAATGCTGTGGATGGAGGCGGCAGATGCATTGAAAGAAA
AAGTGTTTGTAGATGGCAGGCGGAAAAAGGCAATGGATGATATGCACGAC
CTCTGCATCATCACTCCAACCCAGCACTCTCGTATCACAACAGATTCAAC
TTCTGCTCGAATTCGTGTCCTTCCAATGCGAGCACTCACCCTCACCAATC
TCCAATCTCTCCTCAAGTCTCTGTCGCATCCCCTCTCAACAAGTCAATCC
TCTCGTCCAACAGGTGATTTTCGATTCCTCCCAACACTCCACACTCCTCT
CCTTCACTCACTTCGCACCGACACCGTCTTCCTTGACACAACCTACGCCA
GACACCCATTGCGTCATTTTCCATCTCAATACGCAGCAACGCAAGCTGTG
AGAGAAATCGTGTTGCGATATGGAGGTGATCCTGGTGTATTGTTTGTGTT
CGGAGCCTATGTCATTGGGAAAGAAATGCTGTGGATGGAGGCGGCAGATG
CATTGAAAGAAAAAGTGTTTGTAGATGGCAGGCGGAAAAAGGCAATGGAT
GATATGCACGACCTCTGCATCATCACTCCAACCCAGCACTCTCGTATCAC
AACAGATTCAACTTCTGCTCGAATTCGTGTCCTTCCAATGCGAGCACTCA
CCCTCACCAATCTCCAATCTCTCCTCAAGTCTCTGTCGCATCCCCTCTCA
ACAAGTCAATCCTCTCGTCCAACA
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