mRNA_M-pyrifera_M_contig107500.1598.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107500.1598.1
Unique NamemRNA_M-pyrifera_M_contig107500.1598.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107500.1598.1 vs. uniprot
Match: A0A813AB03_9DINO (KDM8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AB03_9DINO)

HSP 1 Score: 111 bits (277), Expect = 1.430e-26
Identity = 69/161 (42.86%), Postives = 92/161 (57.14%), Query Frame = 1 
Query:   19 ARNWGAMSWTWEYLASMARANPAV-VSVSRSEXXXXXXXXXXXXXEAVFRAIPASVSTSASSFYYLKQCDLFSLLPQLSADI---PWPCLSELLDHPLFLTPRAWAGRGGSVTGTHWDDEKNVLVQLKGTKRVILSPPSSAPFLGLNSKYDAGTVCADVDL 489
            AR W A SW++E+LAS+  A+  V +S+S  E             +        S+++ +    Y+KQC+L  + P L  DI   P+P      D  +F+TP AW G  GS TG H DDE NVLV LKG KRV L+ PS+AP+L +N KYD+GTVCAD  L
Sbjct:    2 ARAWRAASWSFEHLASLPGADVQVPLSMSLEESSSATRKRSISLAQYC-----KSLASGSGHPGYVKQCELLDMFPFLQEDIGELPFP------DSHVFVTPYAWLGAPGSHTGLHQDDEDNVLVVLKGRKRVRLAHPSAAPWLYVNDKYDSGTVCADASL 151
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BLAST of mRNA_M-pyrifera_M_contig107500.1598.1 vs. uniprot
Match: A0A7S1VMB7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMB7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.390e-16
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:  208 YLKQCDLFSLLPQLSADIPWPCLSELLDHPL--FLTPRAWAGRGGSVTGTHWDDEKNVLVQLKGTKRVILSPPSSAPFLGLNSKYDAGTVCADVDLRAL 498
            YLKQ ++F  +P L +D+    L  ++  P   FLT   W G  G+ TG H DDE NVL+Q++GTKRV +  PS    L  N+KYD+GT C D D+  L
Sbjct:    1 YLKQFEVFKAIPSLQSDLD---LRRVVWSPWTRFLTTYLWIGPKGATTGLHNDDENNVLMQIRGTKRVHVISPSHRAALQPNTKYDSGTECCDADIATL 96
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BLAST of mRNA_M-pyrifera_M_contig107500.1598.1 vs. uniprot
Match: A0A7S3T6A2_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T6A2_EMIHU)

HSP 1 Score: 53.1 bits (126), Expect = 1.580e-5
Identity = 31/76 (40.79%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:  220 CDLFSLLPQLSAD---IPWPCLSELLDHP---LFLTPRAWAGRGGSVTGTHWDDEKNVLVQLKGTKRVILSPPSSA 429
            C   S   QL+AD   + W  L E  +      F T + WAG GG VT  H+D   N L QL+G+KR++L PPS +
Sbjct:   55 CRQLSGSAQLAADLGEVGWRWLREACEAAGALPFKTAQLWAGHGGGVTPCHYDALHNFLAQLRGSKRLLLLPPSES 130
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BLAST of mRNA_M-pyrifera_M_contig107500.1598.1 vs. uniprot
Match: A0A7S3T690_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T690_EMIHU)

HSP 1 Score: 53.1 bits (126), Expect = 2.470e-5
Identity = 31/76 (40.79%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:  220 CDLFSLLPQLSAD---IPWPCLSELLDHP---LFLTPRAWAGRGGSVTGTHWDDEKNVLVQLKGTKRVILSPPSSA 429
            C   S   QL+AD   + W  L E  +      F T + WAG GG VT  H+D   N L QL+G+KR++L PPS +
Sbjct:   55 CRQLSGSAQLAADLGEVGWRWLREACEAAGALPFKTAQLWAGHGGGVTPCHYDALHNFLAQLRGSKRLLLLPPSES 130
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BLAST of mRNA_M-pyrifera_M_contig107500.1598.1 vs. uniprot
Match: R1G5Z6_EMIHU (JmjC domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G5Z6_EMIHU)

HSP 1 Score: 52.4 bits (124), Expect = 7.160e-5
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:  244 QLSADIPWPCLSELLDHPLFLTPRAWAGRGGSVTGTHWDDEKNVLVQLKGTKRVILSPPSSA 429
            QL+AD     L E      F T + WAG GG VT  H+D   N L QL+G+KR++L PPS +
Sbjct:  141 QLAAD-----LGEAAGALPFKTAQLWAGHGGGVTPCHYDALHNFLAQLRGSKRLLLLPPSES 197
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107500.1598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A813AB03_9DINO1.430e-2642.86KDM8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S1VMB7_9STRA1.390e-1644.44Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3T6A2_EMIHU1.580e-540.79Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3T690_EMIHU2.470e-540.79Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1G5Z6_EMIHU7.160e-545.16JmjC domain-containing protein n=1 Tax=Emiliania h... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107500contigM-pyrifera_M_contig107500:64..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog227086.JGI_V11_71739
KEGG koko:K10277,ko:K19219
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cupin-like domain
EggNOG OGsCOG1226@1,KOG2508@2759
Ec32 ortholog descriptionJmjC domain
Ec32 orthologEc-00_006770.2
EC1.14.11.27
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.7981908-CDS-M-pyrifera_M_contig107500:63..5671622815584.7981908-CDS-M-pyrifera_M_contig107500:63..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107500 64..567 -
1692277475.191325-CDS-M-pyrifera_M_contig107500:63..5671692277475.191325-CDS-M-pyrifera_M_contig107500:63..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107500 64..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107500.1598.1prot_M-pyrifera_M_contig107500.1598.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107500 64..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107500.1598.1

>prot_M-pyrifera_M_contig107500.1598.1 ID=prot_M-pyrifera_M_contig107500.1598.1|Name=mRNA_M-pyrifera_M_contig107500.1598.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
CFHAGYARNWGAMSWTWEYLASMARANPAVVSVSRSEEEVEETKREEEEL
EAVFRAIPASVSTSASSFYYLKQCDLFSLLPQLSADIPWPCLSELLDHPL
FLTPRAWAGRGGSVTGTHWDDEKNVLVQLKGTKRVILSPPSSAPFLGLNS
KYDAGTVCADVDLRALAE
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mRNA from alignment at M-pyrifera_M_contig107500:64..567-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107500.1598.1 ID=mRNA_M-pyrifera_M_contig107500.1598.1|Name=mRNA_M-pyrifera_M_contig107500.1598.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig107500:64..567- (Macrocystis pyrifera P11B4 male)
TGCTTTCATGCAGGATATGCTCGGAATTGGGGAGCGATGTCATGGACATG
GGAGTATTTGGCGTCTATGGCGAGGGCGAACCCTGCTGTTGTAAGCGTGT
CTCGGAGCGAGGAGGAGGTTGAAGAGACAAAGCGAGAAGAAGAGGAGTTG
GAAGCTGTATTCCGCGCCATTCCCGCCTCTGTGTCAACGTCTGCTTCCTC
TTTCTACTATTTGAAGCAGTGCGACCTGTTTTCCCTCCTTCCCCAGCTCT
CCGCTGATATTCCATGGCCCTGTCTCTCCGAGTTGCTCGACCATCCGCTA
TTTCTCACCCCACGCGCGTGGGCTGGACGAGGTGGTAGTGTGACAGGAAC
GCACTGGGATGACGAGAAGAACGTACTCGTGCAGCTCAAGGGCACAAAGC
GCGTCATTCTCTCCCCACCTTCATCTGCGCCTTTTCTGGGTCTCAATTCC
AAGTATGACGCTGGTACTGTGTGTGCAGATGTTGATTTGCGTGCGCTCGC
AGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107500:64..567-

>mRNA_M-pyrifera_M_contig107500.1598.1 ID=mRNA_M-pyrifera_M_contig107500.1598.1|Name=mRNA_M-pyrifera_M_contig107500.1598.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig107500:64..567- (Macrocystis pyrifera P11B4 male)
TGCTTTCATGCAGGATATGCTCGGAATTGGGGAGCGATGTCATGGACATG
GGAGTATTTGGCGTCTATGGCGAGGGCGAACCCTGCTGTTGTAAGCGTGT
CTCGGAGCGAGGAGGAGGTTGAAGAGACAAAGCGAGAAGAAGAGGAGTTG
GAAGCTGTATTCCGCGCCATTCCCGCCTCTGTGTCAACGTCTGCTTCCTC
TTTCTACTATTTGAAGCAGTGCGACCTGTTTTCCCTCCTTCCCCAGCTCT
CCGCTGATATTCCATGGCCCTGTCTCTCCGAGTTGCTCGACCATCCGCTA
TTTCTCACCCCACGCGCGTGGGCTGGACGAGGTGGTAGTGTGACAGGAAC
GCACTGGGATGACGAGAAGAACGTACTCGTGCAGCTCAAGGGCACAAAGC
GCGTCATTCTCTCCCCACCTTCATCTGCGCCTTTTCTGGGTCTCAATTCC
AAGTATGACGCTGGTACTGTGTGTGCAGATGTTGATTTGCGTGCGCTCGC
AGAGTGCTTTCATGCAGGATATGCTCGGAATTGGGGAGCGATGTCATGGA
CATGGGAGTATTTGGCGTCTATGGCGAGGGCGAACCCTGCTGTTGTAAGC
GTGTCTCGGAGCGAGGAGGAGGTTGAAGAGACAAAGCGAGAAGAAGAGGA
GTTGGAAGCTGTATTCCGCGCCATTCCCGCCTCTGTGTCAACGTCTGCTT
CCTCTTTCTACTATTTGAAGCAGTGCGACCTGTTTTCCCTCCTTCCCCAG
CTCTCCGCTGATATTCCATGGCCCTGTCTCTCCGAGTTGCTCGACCATCC
GCTATTTCTCACCCCACGCGCGTGGGCTGGACGAGGTGGTAGTGTGACAG
GAACGCACTGGGATGACGAGAAGAACGTACTCGTGCAGCTCAAGGGCACA
AAGCGCGTCATTCTCTCCCCACCTTCATCTGCGCCTTTTCTGGGTCTCAA
TTCCAAGTATGACGCTGGTACTGTGTGTGCAGATGTTGATTTGCGTGCGC
TCGCAGAG
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