mRNA_M-pyrifera_M_contig107486.1592.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107486.1592.1
Unique NamemRNA_M-pyrifera_M_contig107486.1592.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107486.1592.1 vs. uniprot
Match: UPI001C26617B (glycoside hydrolase family 99-like domain-containing protein n=1 Tax=Geomonas TaxID=2651583 RepID=UPI001C26617B)

HSP 1 Score: 53.9 bits (128), Expect = 1.850e-6
Identity = 33/84 (39.29%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:    7 VGAIRWDAWYWTKENGYDANRDIVGKTVTIDLYPEQFHVRVPFWGKLNGSEVVVGLE-NSTAVIGQENELASAFGVDFWAFCTY 255
            VGAIRWDAWY              G      L   Q+  R+PF+   NG +    L  +S  V+ +E  LASA G+D+WAFC Y
Sbjct:   24 VGAIRWDAWY-------------AGSPYEYSLSAPQWRGRLPFYAT-NGKDGRASLRADSQEVMDREIVLASAAGIDYWAFCYY 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107486.1592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C26617B1.850e-639.29glycoside hydrolase family 99-like domain-containi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107486contigM-pyrifera_M_contig107486:202..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.3712714-CDS-M-pyrifera_M_contig107486:201..4591622815584.3712714-CDS-M-pyrifera_M_contig107486:201..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107486 202..459 -
1692277474.9536984-CDS-M-pyrifera_M_contig107486:201..4591692277474.9536984-CDS-M-pyrifera_M_contig107486:201..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107486 202..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107486.1592.1prot_M-pyrifera_M_contig107486.1592.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107486 202..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107486.1592.1

>prot_M-pyrifera_M_contig107486.1592.1 ID=prot_M-pyrifera_M_contig107486.1592.1|Name=mRNA_M-pyrifera_M_contig107486.1592.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
VRVGAIRWDAWYWTKENGYDANRDIVGKTVTIDLYPEQFHVRVPFWGKLN
GSEVVVGLENSTAVIGQENELASAFGVDFWAFCTYP
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mRNA from alignment at M-pyrifera_M_contig107486:202..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107486.1592.1 ID=mRNA_M-pyrifera_M_contig107486.1592.1|Name=mRNA_M-pyrifera_M_contig107486.1592.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig107486:202..459- (Macrocystis pyrifera P11B4 male)
GTGAGAGTAGGTGCAATTCGATGGGATGCTTGGTATTGGACGAAAGAGAA
TGGATACGATGCAAATCGTGACATTGTTGGAAAAACTGTCACAATTGACC
TGTATCCGGAGCAATTTCATGTCCGGGTTCCGTTTTGGGGGAAACTGAAT
GGATCTGAGGTGGTGGTAGGGTTGGAAAACTCGACTGCAGTGATTGGCCA
GGAGAATGAGCTTGCTTCGGCTTTCGGCGTCGATTTCTGGGCATTTTGTA
CATATCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107486:202..459-

>mRNA_M-pyrifera_M_contig107486.1592.1 ID=mRNA_M-pyrifera_M_contig107486.1592.1|Name=mRNA_M-pyrifera_M_contig107486.1592.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig107486:202..459- (Macrocystis pyrifera P11B4 male)
GTGAGAGTAGGTGCAATTCGATGGGATGCTTGGTATTGGACGAAAGAGAA
TGGATACGATGCAAATCGTGACATTGTTGGAAAAACTGTCACAATTGACC
TGTATCCGGAGCAATTTCATGTCCGGGTTCCGTTTTGGGGGAAACTGAAT
GGATCTGAGGTGGTGGTAGGGTTGGAAAACTCGACTGCAGTGATTGGCCA
GGAGAATGAGCTTGCTTCGGCTTTCGGCGTCGATTTCTGGGCATTTTGTA
CATATCCTGTGAGAGTAGGTGCAATTCGATGGGATGCTTGGTATTGGACG
AAAGAGAATGGATACGATGCAAATCGTGACATTGTTGGAAAAACTGTCAC
AATTGACCTGTATCCGGAGCAATTTCATGTCCGGGTTCCGTTTTGGGGGA
AACTGAATGGATCTGAGGTGGTGGTAGGGTTGGAAAACTCGACTGCAGTG
ATTGGCCAGGAGAATGAGCTTGCTTCGGCTTTCGGCGTCGATTTCTGGGC
ATTTTGTACATATCCT
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