mRNA_M-pyrifera_M_contig107462.1590.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107462.1590.1
Unique NamemRNA_M-pyrifera_M_contig107462.1590.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107462.1590.1 vs. uniprot
Match: A0A7S4NIP6_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NIP6_9EUKA)

HSP 1 Score: 47.8 bits (112), Expect = 8.300e-5
Identity = 19/54 (35.19%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 IQDLKRDVRGQMLTVAALLTQLRLMFTPLQQAKYLVWTRRNPACMQLVNSLWKD 162
            + +++  V   + T+   LT+++LM TP+QQAK+L W  +N A ++L+ S+W+ 
Sbjct:  231 VHEVRNQVLRWLTTMKCHLTEIQLMLTPIQQAKFLWWAEQNMAVLKLIESMWRS 284
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107462.1590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4NIP6_9EUKA8.300e-535.19Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107462contigM-pyrifera_M_contig107462:54..218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.287376-CDS-M-pyrifera_M_contig107462:53..2181622815584.287376-CDS-M-pyrifera_M_contig107462:53..218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107462 54..218 +
1692277474.9102845-CDS-M-pyrifera_M_contig107462:53..2181692277474.9102845-CDS-M-pyrifera_M_contig107462:53..218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107462 54..218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107462.1590.1prot_M-pyrifera_M_contig107462.1590.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107462 54..218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107462.1590.1

>prot_M-pyrifera_M_contig107462.1590.1 ID=prot_M-pyrifera_M_contig107462.1590.1|Name=mRNA_M-pyrifera_M_contig107462.1590.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
IQDLKRDVRGQMLTVAALLTQLRLMFTPLQQAKYLVWTRRNPACMQLVNS
LWKDV
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mRNA from alignment at M-pyrifera_M_contig107462:54..218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107462.1590.1 ID=mRNA_M-pyrifera_M_contig107462.1590.1|Name=mRNA_M-pyrifera_M_contig107462.1590.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig107462:54..218+ (Macrocystis pyrifera P11B4 male)
ATCCAGGACCTCAAGCGCGACGTGCGCGGCCAGATGCTCACCGTCGCCGC
GCTCCTCACGCAGCTGCGCCTCATGTTCACGCCGCTGCAGCAGGCCAAGT
ACCTCGTGTGGACCAGGCGCAACCCGGCCTGCATGCAGCTGGTCAACTCC
CTCTGGAAGGACGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107462:54..218+

>mRNA_M-pyrifera_M_contig107462.1590.1 ID=mRNA_M-pyrifera_M_contig107462.1590.1|Name=mRNA_M-pyrifera_M_contig107462.1590.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig107462:54..218+ (Macrocystis pyrifera P11B4 male)
ATCCAGGACCTCAAGCGCGACGTGCGCGGCCAGATGCTCACCGTCGCCGC
GCTCCTCACGCAGCTGCGCCTCATGTTCACGCCGCTGCAGCAGGCCAAGT
ACCTCGTGTGGACCAGGCGCAACCCGGCCTGCATGCAGCTGGTCAACTCC
CTCTGGAAGGACGTGATCCAGGACCTCAAGCGCGACGTGCGCGGCCAGAT
GCTCACCGTCGCCGCGCTCCTCACGCAGCTGCGCCTCATGTTCACGCCGC
TGCAGCAGGCCAAGTACCTCGTGTGGACCAGGCGCAACCCGGCCTGCATG
CAGCTGGTCAACTCCCTCTGGAAGGACGTG
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