mRNA_M-pyrifera_M_contig10725.1558.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10725.1558.1
Unique NamemRNA_M-pyrifera_M_contig10725.1558.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10725.1558.1 vs. uniprot
Match: D7FX50_ECTSI (ApaG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX50_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.950e-25
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 SFQERTRLWVAVSKAEANAVKLERQGEVEEAAELRAHANSMRYEDPYTALQDQLDEAVKNEEFVKIARLRLQM 219
            S +ERTRLW+ VS+AE  AVKLERQGE EEA + R  A  MRYEDPYTALQD+LDEA+KNEEFVKIARLRLQM
Sbjct:  158 SEEERTRLWMGVSRAELQAVKLERQGETEEAEKFRQRAKEMRYEDPYTALQDELDEAIKNEEFVKIARLRLQM 230
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10725.1558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FX50_ECTSI2.950e-2576.71ApaG domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10725contigM-pyrifera_M_contig10725:9608..10337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue9.5e-22
Seed eggNOG ortholog2880.D7FX50
KEGG koko:K06195
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitochondrion morphogenesis
EggNOG OGsCOG2967@1,KOG4408@2759
Ec32 ortholog descriptionApaG domain
Ec32 orthologEc-10_004320.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.763838-CDS-M-pyrifera_M_contig10725:9607..97901622815582.763838-CDS-M-pyrifera_M_contig10725:9607..9790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10725 9608..9790 +
1692277474.1590111-CDS-M-pyrifera_M_contig10725:9607..97901692277474.1590111-CDS-M-pyrifera_M_contig10725:9607..9790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10725 9608..9790 +
1622815582.7731454-CDS-M-pyrifera_M_contig10725:10301..103371622815582.7731454-CDS-M-pyrifera_M_contig10725:10301..10337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10725 10302..10337 +
1692277474.173554-CDS-M-pyrifera_M_contig10725:10301..103371692277474.173554-CDS-M-pyrifera_M_contig10725:10301..10337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10725 10302..10337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10725.1558.1prot_M-pyrifera_M_contig10725.1558.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10725 9608..10337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10725.1558.1

>prot_M-pyrifera_M_contig10725.1558.1 ID=prot_M-pyrifera_M_contig10725.1558.1|Name=mRNA_M-pyrifera_M_contig10725.1558.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
SFQERTRLWVAVSKAEANAVKLERQGEVEEAAELRAHANSMRYEDPYTAL
QDQLDEAVKNEEFVKIARLRLQM
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mRNA from alignment at M-pyrifera_M_contig10725:9608..10337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10725.1558.1 ID=mRNA_M-pyrifera_M_contig10725.1558.1|Name=mRNA_M-pyrifera_M_contig10725.1558.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=730bp|location=Sequence derived from alignment at M-pyrifera_M_contig10725:9608..10337+ (Macrocystis pyrifera P11B4 male)
TCTTTCCAGGAGAGGACGCGATTGTGGGTAGCGGTGTCCAAGGCGGAGGC
GAACGCGGTAAAGCTAGAGAGGCAGGGGGAGGTGGAGGAGGCCGCCGAGC
TCCGCGCGCATGCGAATTCGATGCGATACGAGGACCCATACACAGCCCTG
CAGGATCAGCTAGATGAGGCGGTCAAAAACGAGGTAATAACCGTGTTGAT
TTTTTTTTACGTCCTTTTTCGTTTTTTTTTAGTCAATGGTAGGTACATTG
CTGTACGTGCTTGCAGTGACTGTTTTTGTTTTTTTCAAAAGACACCTCCG
CTATGAAATGGAAAATTCGAATTTCGTCGAAACATGGTAAAAAAAATATT
ACGTTTGATTTTTTTATGCACCATTGTTTTTTCGTTAAACTGTGATTTTC
GTTTTTTTGAGGTGATCAGCATTGCAGCAGAGATTGTGTATTCGTATGTA
CGAGTACGTATGAGGGCATTTATCTTGCTGTAGTGATCATGACCCTTGCA
GGCGTTCTCCTCTGAAGATGGCTGATTCATATGATTTCCCCCCCCCGAAT
GGCTCCGTCTCGAAAGGGACGCGTGGTCAATGGTCAAATTACTACGGCAA
GCAACAAATGAGTACCCCCCCCCCCCCCACCGATGATGATCGCTCACGCG
CTGACGTTGTACTTGATGTGCTTCTCTCATATTTCTGTGTTCAGGAGTTC
GTGAAGATAGCGCGGCTGAGGCTGCAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10725:9608..10337+

>mRNA_M-pyrifera_M_contig10725.1558.1 ID=mRNA_M-pyrifera_M_contig10725.1558.1|Name=mRNA_M-pyrifera_M_contig10725.1558.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig10725:9608..10337+ (Macrocystis pyrifera P11B4 male)
TCTTTCCAGGAGAGGACGCGATTGTGGGTAGCGGTGTCCAAGGCGGAGGC
GAACGCGGTAAAGCTAGAGAGGCAGGGGGAGGTGGAGGAGGCCGCCGAGC
TCCGCGCGCATGCGAATTCGATGCGATACGAGGACCCATACACAGCCCTG
CAGGATCAGCTAGATGAGGCGGTCAAAAACGAGTCTTTCCAGGAGAGGAC
GCGATTGTGGGTAGCGGTGTCCAAGGCGGAGGCGAACGCGGTAAAGCTAG
AGAGGCAGGGGGAGGTGGAGGAGGCCGCCGAGCTCCGCGCGCATGCGAAT
TCGATGCGATACGAGGACCCATACACAGCCCTGCAGGATCAGCTAGATGA
GGCGGTCAAAAACGAGGAGTTCGTGAAGATAGCGCGGCTGAGGCTGCAGA
TGGAGTTCGTGAAGATAGCGCGGCTGAGGCTGCAGATG
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