mRNA_M-pyrifera_M_contig107197.1541.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107197.1541.1
Unique NamemRNA_M-pyrifera_M_contig107197.1541.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107197.1541.1 vs. uniprot
Match: A0A2E7KCB4_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KCB4_9PLAN)

HSP 1 Score: 233 bits (595), Expect = 1.550e-77
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 MTEQAGTSSWLKRIRIFTGLLLMALAVGGAVMLATAGGMSSGTLASGRSVTAQSDSWKLDATYSGDTATIKTAGFNIEVTPDRLNVDRQRIAFIDSRAKSVGVKVKANEIIFHADGKWVATYRR 372
            MTEQAGTSSWLKRIRIFTGLLLMALAVGGAVMLATAGGMSSGTLASGRSVTAQSDSWKLDATYSGDTATIKTAGFNIEVTPDRLNVDRQRIAFIDS+AKSVGVKVKANEIIFHADGKWVATYRR
Sbjct:    1 MTEQAGTSSWLKRIRIFTGLLLMALAVGGAVMLATAGGMSSGTLASGRSVTAQSDSWKLDATYSGDTATIKTAGFNIEVTPDRLNVDRQRIAFIDSKAKSVGVKVKANEIIFHADGKWVATYRR 124
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BLAST of mRNA_M-pyrifera_M_contig107197.1541.1 vs. uniprot
Match: A0A518A1M8_9PLAN (Uncharacterized protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A1M8_9PLAN)

HSP 1 Score: 139 bits (349), Expect = 4.670e-40
Identity = 73/124 (58.87%), Postives = 89/124 (71.77%), Query Frame = 1 
Query:    1 MTEQAGTSSWLKRIRIFTGLLLMALAVGGAVMLATAGGMSSGTLASGRSVTAQSDSWKLDATYSGDTATIKTAGFNIEVTPDRLNVDRQRIAFIDSRAKSVGVKVKANEIIFHADGKWVATYRR 372
            MTEQ  + SWL    IF G++L  L VGG V+ A  GG SSGTL SGRSVT  SDSW L++ Y  DT +IKTAGF I+VTP R++VD QR+A++D+ AK+V V VK+ EI  HADGKWV T RR
Sbjct:    1 MTEQTHSRSWLLWGGIFAGIMLFVLVVGGVVLAALNGGSSSGTLPSGRSVTTHSDSWNLESRYEKDTVSIKTAGFKIQVTPGRVDVDGQRVAYLDTAAKNVAVDVKSGEITVHADGKWVVTVRR 124
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BLAST of mRNA_M-pyrifera_M_contig107197.1541.1 vs. uniprot
Match: A0A8J8SUU7_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8SUU7_HALGN)

HSP 1 Score: 68.6 bits (166), Expect = 1.920e-12
Identity = 49/111 (44.14%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:   37 RIRIFTGLLLMALAVGGAVMLAT--AGGMSSGTLASGRSVTAQSDSWKLDATYSGDTATIKTAGFNIEVTPDRLNVDRQRIAFIDSRAKSVGVKVKANEIIFHADGKWVAT 363
            R+    G+ +  L+ G A    T  AGG + GTLASGR+VTA SDS  L + ++ D+ATI+TAG  I V P  L VD   +A I+   K V V VK   + F ADG  V T
Sbjct:    3 RLHRCIGIAIPVLSGGIAAAFVTGCAGGSAGGTLASGRTVTANSDSLFLRSQFTKDSATIRTAGKQIVVAPKSLIVDGVPVAKIEEETKDVQVNVKNGNVTFQADGADVET 113
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107197.1541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7KCB4_9PLAN1.550e-7799.19Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A518A1M8_9PLAN4.670e-4058.87Uncharacterized protein n=4 Tax=Gimesia panareensi... [more]
A0A8J8SUU7_HALGN1.920e-1244.14Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107197contigM-pyrifera_M_contig107197:115..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size375
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9144294-CDS-M-pyrifera_M_contig107197:114..4891622815581.9144294-CDS-M-pyrifera_M_contig107197:114..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107197 115..489 -
1692277473.8115003-CDS-M-pyrifera_M_contig107197:114..4891692277473.8115003-CDS-M-pyrifera_M_contig107197:114..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107197 115..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107197.1541.1prot_M-pyrifera_M_contig107197.1541.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107197 115..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107197.1541.1

>prot_M-pyrifera_M_contig107197.1541.1 ID=prot_M-pyrifera_M_contig107197.1541.1|Name=mRNA_M-pyrifera_M_contig107197.1541.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MTEQAGTSSWLKRIRIFTGLLLMALAVGGAVMLATAGGMSSGTLASGRSV
TAQSDSWKLDATYSGDTATIKTAGFNIEVTPDRLNVDRQRIAFIDSRAKS
VGVKVKANEIIFHADGKWVATYRR*
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mRNA from alignment at M-pyrifera_M_contig107197:115..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107197.1541.1 ID=mRNA_M-pyrifera_M_contig107197.1541.1|Name=mRNA_M-pyrifera_M_contig107197.1541.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig107197:115..489- (Macrocystis pyrifera P11B4 male)
ATGACAGAGCAGGCTGGAACCAGTTCCTGGTTGAAACGGATCAGAATATT
TACGGGCTTACTGCTGATGGCACTGGCCGTCGGTGGGGCAGTGATGCTGG
CGACCGCTGGTGGTATGAGTAGCGGCACGCTGGCCAGCGGGCGTTCGGTA
ACCGCACAGTCTGACAGCTGGAAATTAGATGCTACTTACTCGGGTGATAC
GGCGACCATCAAAACCGCGGGGTTTAACATTGAGGTGACCCCCGATCGAC
TGAATGTGGATCGGCAGCGGATCGCGTTTATCGACTCCAGGGCGAAATCG
GTGGGAGTGAAAGTGAAAGCAAATGAAATTATCTTTCATGCGGATGGGAA
GTGGGTGGCCACTTATCGCCGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107197:115..489-

>mRNA_M-pyrifera_M_contig107197.1541.1 ID=mRNA_M-pyrifera_M_contig107197.1541.1|Name=mRNA_M-pyrifera_M_contig107197.1541.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig107197:115..489- (Macrocystis pyrifera P11B4 male)
ATGACAGAGCAGGCTGGAACCAGTTCCTGGTTGAAACGGATCAGAATATT
TACGGGCTTACTGCTGATGGCACTGGCCGTCGGTGGGGCAGTGATGCTGG
CGACCGCTGGTGGTATGAGTAGCGGCACGCTGGCCAGCGGGCGTTCGGTA
ACCGCACAGTCTGACAGCTGGAAATTAGATGCTACTTACTCGGGTGATAC
GGCGACCATCAAAACCGCGGGGTTTAACATTGAGGTGACCCCCGATCGAC
TGAATGTGGATCGGCAGCGGATCGCGTTTATCGACTCCAGGGCGAAATCG
GTGGGAGTGAAAGTGAAAGCAAATGAAATTATCTTTCATGCGGATGGGAA
GTGGGTGGCCACTTATCGCCGGTAAATGACAGAGCAGGCTGGAACCAGTT
CCTGGTTGAAACGGATCAGAATATTTACGGGCTTACTGCTGATGGCACTG
GCCGTCGGTGGGGCAGTGATGCTGGCGACCGCTGGTGGTATGAGTAGCGG
CACGCTGGCCAGCGGGCGTTCGGTAACCGCACAGTCTGACAGCTGGAAAT
TAGATGCTACTTACTCGGGTGATACGGCGACCATCAAAACCGCGGGGTTT
AACATTGAGGTGACCCCCGATCGACTGAATGTGGATCGGCAGCGGATCGC
GTTTATCGACTCCAGGGCGAAATCGGTGGGAGTGAAAGTGAAAGCAAATG
AAATTATCTTTCATGCGGATGGGAAGTGGGTGGCCACTTATCGCCGGTAA
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