mRNA_M-pyrifera_M_contig107084.1522.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107084.1522.1
Unique NamemRNA_M-pyrifera_M_contig107084.1522.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107084.1522.1 vs. uniprot
Match: UPI001459016D (putative ankyrin repeat protein RF_0381 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001459016D)

HSP 1 Score: 55.5 bits (132), Expect = 6.290e-6
Identity = 48/143 (33.57%), Postives = 67/143 (46.85%), Query Frame = 1 
Query:    1 PLSSACKRGNLDVARALLDAGAHLV-------PSCLLCAVESGSIECIDLLFEHGADFND-----LRPLAEE-VGVGLLSVAFLVRKLLELGADPSERD-RYGCIPLHYAG--RNLVITKLLLSAAHDGCDVNVVDHFGRSAL 381
            PL     R   D+A+ LL   AH V        S + CAVESGS+E ++L+  HGAD N      + PL     G G+     L R LL+ GAD   +D R     L +A   +N  + + L++A   G D N  D+   + L
Sbjct:   80 PLMYCMVRHFCDIAKELLSRDAHAVHSQDRFGKSVIHCAVESGSVELLNLVLSHGADVNQTDWYGITPLMTLCAGTGIRHTTELCRVLLDAGADLELKDVRSKRTALQFAAVQKNTDLVQCLVAA---GADPNTTDNASLTPL 219
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107084.1522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001459016D6.290e-633.57putative ankyrin repeat protein RF_0381 n=1 Tax=Pe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107084contigM-pyrifera_M_contig107084:6..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog216595.PFLU_2904
KEGG koko:K06867
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,COG0666@2
COG Functional cat.G
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.1048138-CDS-M-pyrifera_M_contig107084:5..2121622815581.1048138-CDS-M-pyrifera_M_contig107084:5..212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107084 6..212 +
1692277473.4534483-CDS-M-pyrifera_M_contig107084:5..2121692277473.4534483-CDS-M-pyrifera_M_contig107084:5..212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107084 6..212 +
1622815581.1146383-CDS-M-pyrifera_M_contig107084:317..6111622815581.1146383-CDS-M-pyrifera_M_contig107084:317..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107084 318..611 +
1692277473.4652348-CDS-M-pyrifera_M_contig107084:317..6111692277473.4652348-CDS-M-pyrifera_M_contig107084:317..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107084 318..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107084.1522.1prot_M-pyrifera_M_contig107084.1522.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107084 6..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107084.1522.1

>prot_M-pyrifera_M_contig107084.1522.1 ID=prot_M-pyrifera_M_contig107084.1522.1|Name=mRNA_M-pyrifera_M_contig107084.1522.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
PLSSACKRGNLDVARALLDAGAHLVPSCLLCAVESGSIECIDLLFEHGAD
FNDLRPLAEEVGVGLLSVAFLVRKLLELGADPSERDRYGCIPLHYAGRNL
VITKLLLSAAHDGCDVNVVDHFGRSALHHAAEEDRTEGGEVVQELLDAGA
DVTVVDSLNWTPLHHAA
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mRNA from alignment at M-pyrifera_M_contig107084:6..611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107084.1522.1 ID=mRNA_M-pyrifera_M_contig107084.1522.1|Name=mRNA_M-pyrifera_M_contig107084.1522.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig107084:6..611+ (Macrocystis pyrifera P11B4 male)
CCATTGTCCTCTGCTTGCAAACGTGGTAATCTGGATGTTGCTCGAGCATT
GCTTGATGCTGGTGCTCACCTGGTACCTTCGTGTCTGCTCTGTGCTGTAG
AGAGTGGGTCAATAGAGTGTATTGACCTGTTGTTCGAACATGGTGCAGAC
TTCAATGACCTGAGACCTCTTGCGGAAGAGGTTGGAGTTGGACTTCTTTC
TGTTGCAGTGAATTTTCCTATCGTTTGTGACAGTGAACATGACAAGGAAT
ATTTGGGATACATTCAAACCATTCAGAGCTTACCAAGGGAAACGTGCGAG
CGCGTTGGCGAGTTTCTTGTGCGAAAGTTACTTGAGTTGGGAGCGGATCC
ATCAGAGCGTGATAGGTATGGATGCATTCCACTGCATTACGCAGGACGGA
ATTTGGTTATCACAAAGTTGCTCCTCTCTGCAGCGCATGATGGGTGCGAT
GTGAATGTTGTGGATCATTTTGGGCGATCTGCTTTGCATCACGCTGCAGA
AGAAGATCGCACAGAGGGTGGGGAAGTCGTGCAAGAACTTTTGGATGCTG
GTGCTGATGTGACAGTAGTTGATTCGCTGAACTGGACTCCTCTGCACCAT
GCTGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107084:6..611+

>mRNA_M-pyrifera_M_contig107084.1522.1 ID=mRNA_M-pyrifera_M_contig107084.1522.1|Name=mRNA_M-pyrifera_M_contig107084.1522.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig107084:6..611+ (Macrocystis pyrifera P11B4 male)
CCATTGTCCTCTGCTTGCAAACGTGGTAATCTGGATGTTGCTCGAGCATT
GCTTGATGCTGGTGCTCACCTGGTACCTTCGTGTCTGCTCTGTGCTGTAG
AGAGTGGGTCAATAGAGTGTATTGACCTGTTGTTCGAACATGGTGCAGAC
TTCAATGACCTGAGACCTCTTGCGGAAGAGGTTGGAGTTGGACTTCTTTC
TGTTGCACCATTGTCCTCTGCTTGCAAACGTGGTAATCTGGATGTTGCTC
GAGCATTGCTTGATGCTGGTGCTCACCTGGTACCTTCGTGTCTGCTCTGT
GCTGTAGAGAGTGGGTCAATAGAGTGTATTGACCTGTTGTTCGAACATGG
TGCAGACTTCAATGACCTGAGACCTCTTGCGGAAGAGGTTGGAGTTGGAC
TTCTTTCTGTTGCATTTCTTGTGCGAAAGTTACTTGAGTTGGGAGCGGAT
CCATCAGAGCGTGATAGGTATGGATGCATTCCACTGCATTACGCAGGACG
GAATTTGGTTATCACAAAGTTGCTCCTCTCTGCAGCGCATGATGGGTGCG
ATGTGAATGTTGTGGATCATTTTGGGCGATCTGCTTTGCATCACGCTGCA
GAAGAAGATCGCACAGAGGGTGGGGAAGTCGTGCAAGAACTTTTGGATGC
TGGTGCTGATGTGACAGTAGTTGATTCGCTGAACTGGACTCCTCTGCACC
ATGCTGCTTTTCTTGTGCGAAAGTTACTTGAGTTGGGAGCGGATCCATCA
GAGCGTGATAGGTATGGATGCATTCCACTGCATTACGCAGGACGGAATTT
GGTTATCACAAAGTTGCTCCTCTCTGCAGCGCATGATGGGTGCGATGTGA
ATGTTGTGGATCATTTTGGGCGATCTGCTTTGCATCACGCTGCAGAAGAA
GATCGCACAGAGGGTGGGGAAGTCGTGCAAGAACTTTTGGATGCTGGTGC
TGATGTGACAGTAGTTGATTCGCTGAACTGGACTCCTCTGCACCATGCTG
CT
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