mRNA_M-pyrifera_M_contig107042.1506.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107042.1506.1
Unique NamemRNA_M-pyrifera_M_contig107042.1506.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107042.1506.1 vs. uniprot
Match: UPI00138F234C (hypothetical protein n=1 Tax=Sphingomonas sp. Leaf28 TaxID=1735695 RepID=UPI00138F234C)

HSP 1 Score: 50.8 bits (120), Expect = 6.420e-7
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 MTIETGFDALMTFICVRLGYCGCVKREQAFDVTLLIPDRGVVTADQF 141
            MT    F AL+T +CV  G+CG V  ++   VT  +PDRG+VT DQF
Sbjct:    1 MTDREPFHALITEVCVERGWCGSVVDDRPMHVTDFLPDRGMVTVDQF 47
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107042.1506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00138F234C6.420e-748.94hypothetical protein n=1 Tax=Sphingomonas sp. Leaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107042contigM-pyrifera_M_contig107042:475..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.4021215-CDS-M-pyrifera_M_contig107042:474..6211622815580.4021215-CDS-M-pyrifera_M_contig107042:474..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107042 475..621 +
1692277473.2165768-CDS-M-pyrifera_M_contig107042:474..6211692277473.2165768-CDS-M-pyrifera_M_contig107042:474..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107042 475..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107042.1506.1prot_M-pyrifera_M_contig107042.1506.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107042 475..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107042.1506.1

>prot_M-pyrifera_M_contig107042.1506.1 ID=prot_M-pyrifera_M_contig107042.1506.1|Name=mRNA_M-pyrifera_M_contig107042.1506.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MTIETGFDALMTFICVRLGYCGCVKREQAFDVTLLIPDRGVVTADQFAE
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mRNA from alignment at M-pyrifera_M_contig107042:475..621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107042.1506.1 ID=mRNA_M-pyrifera_M_contig107042.1506.1|Name=mRNA_M-pyrifera_M_contig107042.1506.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig107042:475..621+ (Macrocystis pyrifera P11B4 male)
ATGACAATTGAAACTGGCTTCGACGCCCTGATGACGTTCATTTGCGTCAG
GTTGGGCTACTGCGGCTGCGTTAAAAGGGAGCAGGCATTTGATGTCACCC
TGCTAATTCCGGACCGTGGAGTTGTCACGGCCGACCAATTTGCTGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107042:475..621+

>mRNA_M-pyrifera_M_contig107042.1506.1 ID=mRNA_M-pyrifera_M_contig107042.1506.1|Name=mRNA_M-pyrifera_M_contig107042.1506.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig107042:475..621+ (Macrocystis pyrifera P11B4 male)
ATGACAATTGAAACTGGCTTCGACGCCCTGATGACGTTCATTTGCGTCAG
GTTGGGCTACTGCGGCTGCGTTAAAAGGGAGCAGGCATTTGATGTCACCC
TGCTAATTCCGGACCGTGGAGTTGTCACGGCCGACCAATTTGCTGAAATG
ACAATTGAAACTGGCTTCGACGCCCTGATGACGTTCATTTGCGTCAGGTT
GGGCTACTGCGGCTGCGTTAAAAGGGAGCAGGCATTTGATGTCACCCTGC
TAATTCCGGACCGTGGAGTTGTCACGGCCGACCAATTTGCTGAA
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