mRNA_M-pyrifera_M_contig107033.1501.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107033.1501.1
Unique NamemRNA_M-pyrifera_M_contig107033.1501.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107033.1501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107033contigM-pyrifera_M_contig107033:60..587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size348
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107033.1501.1prot_M-pyrifera_M_contig107033.1501.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107033 60..587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.1652968-CDS-M-pyrifera_M_contig107033:59..1551622815580.1652968-CDS-M-pyrifera_M_contig107033:59..155Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107033 60..155 -
1692277473.111839-CDS-M-pyrifera_M_contig107033:59..1551692277473.111839-CDS-M-pyrifera_M_contig107033:59..155Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107033 60..155 -
1622815580.1827583-CDS-M-pyrifera_M_contig107033:219..3031622815580.1827583-CDS-M-pyrifera_M_contig107033:219..303Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107033 220..303 -
1692277473.1270852-CDS-M-pyrifera_M_contig107033:219..3031692277473.1270852-CDS-M-pyrifera_M_contig107033:219..303Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107033 220..303 -
1622815580.1947012-CDS-M-pyrifera_M_contig107033:361..4451622815580.1947012-CDS-M-pyrifera_M_contig107033:361..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107033 362..445 -
1692277473.135837-CDS-M-pyrifera_M_contig107033:361..4451692277473.135837-CDS-M-pyrifera_M_contig107033:361..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107033 362..445 -
1622815580.2089295-CDS-M-pyrifera_M_contig107033:503..5871622815580.2089295-CDS-M-pyrifera_M_contig107033:503..587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107033 504..587 -
1692277473.147566-CDS-M-pyrifera_M_contig107033:503..5871692277473.147566-CDS-M-pyrifera_M_contig107033:503..587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107033 504..587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107033.1501.1

>prot_M-pyrifera_M_contig107033.1501.1 ID=prot_M-pyrifera_M_contig107033.1501.1|Name=mRNA_M-pyrifera_M_contig107033.1501.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
DNDIGDDGVRALAAALEQDGVLTALNLRDNDIGADGARALAVTLEHNDSL
RSIRLRYNGIGDDGARALAAALEQNRSLTTLDITHNGISAEGTRALAAAL
EQNRTLMTLYLSVCQ*
back to top

mRNA from alignment at M-pyrifera_M_contig107033:60..587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107033.1501.1 ID=mRNA_M-pyrifera_M_contig107033.1501.1|Name=mRNA_M-pyrifera_M_contig107033.1501.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig107033:60..587- (Macrocystis pyrifera P11B4 male)
GATAATGACATTGGCGACGATGGTGTTAGGGCCTTGGCCGCGGCGTTAGA
GCAGGATGGCGTCCTCACGGCACTGAACCTTCGCGTACGTCTGCAGCAGC
GGTGGCGGAGGGGCGGGCGGGGCACTGACGCCTCTGCTGCAGGACAATGA
CATTGGCGCCGACGGTGCTCGGGCCCTGGCGGTGACACTGGAGCACAACG
ACAGCCTCCGAAGCATCAGGCTCCGCGTACGCCCGCGGCAGCGGTGCTGA
AGCGGGCACCGTGGCGGTTGTGTCCCTGCTGCAGTACAATGGCATTGGTG
ACGACGGTGCTCGGGCCCTGGCGGCGGCTCTGGAGCAGAACCGCAGCCTC
ACGACACTGGACATTACCGTATGTCTGCAGCTGCAGTGGTATGGATAGAA
AGGGAGCGGCCGGGCTGACGCCTCCTGTGCAGCACAATGGTATTAGCGCC
GAAGGCACCAGGGCCCTGGCGGCGGCTCTGGAGCAGAACAGAACCCTCAT
GACGCTGTACCTCAGCGTATGTCAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig107033:60..587-

>mRNA_M-pyrifera_M_contig107033.1501.1 ID=mRNA_M-pyrifera_M_contig107033.1501.1|Name=mRNA_M-pyrifera_M_contig107033.1501.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig107033:60..587- (Macrocystis pyrifera P11B4 male)
GATAATGACATTGGCGACGATGGTGTTAGGGCCTTGGCCGCGGCGTTAGA
GCAGGATGGCGTCCTCACGGCACTGAACCTTCGCGATAATGACATTGGCG
ACGATGGTGTTAGGGCCTTGGCCGCGGCGTTAGAGCAGGATGGCGTCCTC
ACGGCACTGAACCTTCGCGACAATGACATTGGCGCCGACGGTGCTCGGGC
CCTGGCGGTGACACTGGAGCACAACGACAGCCTCCGAAGCATCAGGCTCC
GCGACAATGACATTGGCGCCGACGGTGCTCGGGCCCTGGCGGTGACACTG
GAGCACAACGACAGCCTCCGAAGCATCAGGCTCCGCTACAATGGCATTGG
TGACGACGGTGCTCGGGCCCTGGCGGCGGCTCTGGAGCAGAACCGCAGCC
TCACGACACTGGACATTACCTACAATGGCATTGGTGACGACGGTGCTCGG
GCCCTGGCGGCGGCTCTGGAGCAGAACCGCAGCCTCACGACACTGGACAT
TACCCACAATGGTATTAGCGCCGAAGGCACCAGGGCCCTGGCGGCGGCTC
TGGAGCAGAACAGAACCCTCATGACGCTGTACCTCAGCGTATGTCAGTAG
CACAATGGTATTAGCGCCGAAGGCACCAGGGCCCTGGCGGCGGCTCTGGA
GCAGAACAGAACCCTCATGACGCTGTACCTCAGCGTATGTCAGTAG
back to top