mRNA_M-pyrifera_M_contig107032.1500.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107032.1500.1
Unique NamemRNA_M-pyrifera_M_contig107032.1500.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Match: UPI001EB08360 (protein phosphatase 1 regulatory subunit 42-like isoform X1 n=7 Tax=Haliotis TaxID=6452 RepID=UPI001EB08360)

HSP 1 Score: 66.2 bits (160), Expect = 1.240e-10
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLDGKEVDEKQRAFLLRLHARK 207
            N + D+ ++A +L   P L  L+L  NPV   AKYRDR+I+ +++LE+LDGKE+ E  R FL   HA K
Sbjct:  181 NFLNDMKELAHILGLWPFLWRLELMGNPVCHKAKYRDRIIVMSKHLEMLDGKEISETSRKFLCNWHASK 249          
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Match: A0A8K0EK77_BRALA (PPP1R42 protein n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A8K0EK77_BRALA)

HSP 1 Score: 65.9 bits (159), Expect = 1.690e-10
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLDGKEVDEKQRAFLLRLHARKRGRDR 222
            N +ED+ ++A++L G  +L  L+L  NP+   AKYRDRVI+ +  LE+LDGKE++E  R FLL   A K  R R
Sbjct:  178 NQLEDMKELAQVLAGWVNLWRLELVGNPLCRKAKYRDRVIVMSGSLEVLDGKEINETARKFLLSWKANKEARRR 251          
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Match: C3YQ29_BRAFL (Uncharacterized protein n=5 Tax=Branchiostoma TaxID=7737 RepID=C3YQ29_BRAFL)

HSP 1 Score: 65.9 bits (159), Expect = 1.770e-10
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLDGKEVDEKQRAFLLRLHARKRGRDR 222
            N +ED+ ++A++L G   L  L+L  NP+   AKYRDRVI+ +  LE+LDGKE++E  R FLL   A K  R R
Sbjct:  179 NQLEDMKELAQVLTGWVQLWRLELVGNPLCRKAKYRDRVIVMSASLEVLDGKEINETARKFLLSWKANKEARRR 252          
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Match: A0A1B6D063_9HEMI (Uncharacterized protein n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6D063_9HEMI)

HSP 1 Score: 65.1 bits (157), Expect = 2.120e-10
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLDGKEVDEKQRAFLLRLHARKRGRD 219
            NL+ D+ DV E +    +L E+DLR N V S  KYRD+VI++T  L+LLDGK+V+   R FL  L   K+ R+
Sbjct:  181 NLISDVTDVCETVAFWFNLEEMDLRMNKVTSKKKYRDKVILSTHNLKLLDGKDVNSVTRNFLRNLDIFKKERE 253          
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Match: A0A1B6CFU5_9HEMI (Uncharacterized protein n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CFU5_9HEMI)

HSP 1 Score: 65.1 bits (157), Expect = 3.010e-10
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLDGKEVDEKQRAFLLRLHARKRGRD 219
            NL+ D+ DV E +    +L E+DLR N V S  KYRD+VI++T  L+LLDGK+V+   R FL  L   K+ R+
Sbjct:  181 NLISDVTDVCETVAFWFNLEEMDLRMNKVTSKKKYRDKVILSTHNLKLLDGKDVNSVTRNFLRNLDIFKKERE 253          
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Match: A0A7S3JAU0_9SPIT (Hypothetical protein n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JAU0_9SPIT)

HSP 1 Score: 63.2 bits (152), Expect = 5.090e-10
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLDGKEVDEKQRAFLLRLHARKRG 213
            N ++++ DVA  L     L  LDLR+NP+A + KYRD++IM    +E LD K+V E +R +L+ L  +K+G
Sbjct:   30 NQIQELEDVAPFLSTIQYLNTLDLRDNPLAGIKKYRDQIIMIGLKIETLDDKKVTEHEREYLITLEMKKKG 100          
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Match: A0A8B9TG66_ANAPL (Protein phosphatase 1 regulatory subunit 42 n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=A0A8B9TG66_ANAPL)

HSP 1 Score: 63.5 bits (153), Expect = 7.710e-10
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLDGKEVDEKQRAFLLRLHARKRGRDRGRG 231
            N ++ + D+  +L   P LR +DL  NP+    KYRDR+++ ++ LE LDGKE+ E +R FL+   A K  R + RG
Sbjct:  163 NQLQHMKDLEAVLNKWPKLRRMDLAGNPICHKPKYRDRIVVQSQTLEFLDGKEIKEMERQFLMNWKASKAARKKSRG 239          
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Match: A0A8B9BRV4_9AVES (Protein phosphatase 1 regulatory subunit 42 n=11 Tax=Anseriformes TaxID=8826 RepID=A0A8B9BRV4_9AVES)

HSP 1 Score: 63.2 bits (152), Expect = 9.570e-10
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLDGKEVDEKQRAFLLRLHARKRGRDRGRG 231
            N ++ + D+  +L   P LR +DL  NP+    KYRDRV++ ++ LE LDGKE+ E +R FL+   A K  R + RG
Sbjct:  178 NQLQHMKDLEAVLNKWPKLRRMDLTGNPICHKPKYRDRVVVQSQTLESLDGKEIKEMERQFLMNWKASKAARKKNRG 254          
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Match: H3A8Q8_LATCH (Uncharacterized protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3A8Q8_LATCH)

HSP 1 Score: 62.8 bits (151), Expect = 1.180e-9
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLDGKEVDEKQRAFLLRLHARKRGR 216
            N ++DI D+  +L   P L  +DL +NPV    KYRDR+IM  + L +LDGKE++E  R FL+   A K  R
Sbjct:  179 NQLKDIEDLEFMLSRWPRLWRMDLSKNPVCRKPKYRDRIIMVAKNLTILDGKEINETARQFLINWKASKEAR 250          
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Match: UPI001CFA13B0 (protein phosphatase 1 regulatory subunit 42 isoform X3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFA13B0)

HSP 1 Score: 62.0 bits (149), Expect = 2.600e-9
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLDGKEVDEKQRAFLLRLHARKRGR 216
            N + D+ +V  +L     L+ LDL  NPV    KYRDR+I+A+++LE LDGKEV++  R FL+   A + G+
Sbjct:  179 NQLRDLKEVEHVLKKWHSLQRLDLIRNPVCIKPKYRDRIIVASKHLEFLDGKEVNQMAREFLINWKASRDGK 250          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107032.1500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001EB083601.240e-1046.38protein phosphatase 1 regulatory subunit 42-like i... [more]
A0A8K0EK77_BRALA1.690e-1047.30PPP1R42 protein n=5 Tax=Branchiostoma TaxID=7737 R... [more]
C3YQ29_BRAFL1.770e-1047.30Uncharacterized protein n=5 Tax=Branchiostoma TaxI... [more]
A0A1B6D063_9HEMI2.120e-1046.58Uncharacterized protein n=1 Tax=Clastoptera arizon... [more]
A0A1B6CFU5_9HEMI3.010e-1046.58Uncharacterized protein n=1 Tax=Clastoptera arizon... [more]
A0A7S3JAU0_9SPIT5.090e-1042.25Hypothetical protein n=1 Tax=Euplotes harpa TaxID=... [more]
A0A8B9TG66_ANAPL7.710e-1040.26Protein phosphatase 1 regulatory subunit 42 n=1 Ta... [more]
A0A8B9BRV4_9AVES9.570e-1041.56Protein phosphatase 1 regulatory subunit 42 n=11 T... [more]
H3A8Q8_LATCH1.180e-944.44Uncharacterized protein n=2 Tax=Latimeria chalumna... [more]
UPI001CFA13B02.600e-943.06protein phosphatase 1 regulatory subunit 42 isofor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107032contigM-pyrifera_M_contig107032:332..622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.2
Seed ortholog evalue9.4e-09
Seed eggNOG ortholog7739.XP_002601655.1
Preferred namePPP1R42
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
GOsGO:0002177,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0008092,GO:0008150,GO:0010921,GO:0015630,GO:0015631,GO:0019220,GO:0019222,GO:0031323,GO:0035303,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0065007,GO:0065009,GO:0070840
EggNOG free text desc.dynein complex binding
EggNOG OGs395JS@33154,3BHKI@33208,3CZD3@33213,489BF@7711,KOG2769@1,KOG2769@2759
COG Functional cat.A
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04812
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.1350446-CDS-M-pyrifera_M_contig107032:331..6221622815580.1350446-CDS-M-pyrifera_M_contig107032:331..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107032 332..622 -
1692277473.0898726-CDS-M-pyrifera_M_contig107032:331..6221692277473.0898726-CDS-M-pyrifera_M_contig107032:331..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107032 332..622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107032.1500.1prot_M-pyrifera_M_contig107032.1500.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107032 332..622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107032.1500.1

>prot_M-pyrifera_M_contig107032.1500.1 ID=prot_M-pyrifera_M_contig107032.1500.1|Name=mRNA_M-pyrifera_M_contig107032.1500.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
NLVEDIADVAELLVGCPDLRELDLRENPVASVAKYRDRVIMATEYLELLD
GKEVDEKQRAFLLRLHARKRGRDRGRGGRSAGSLGGGGAADFGRGAG
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mRNA from alignment at M-pyrifera_M_contig107032:332..622-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107032.1500.1 ID=mRNA_M-pyrifera_M_contig107032.1500.1|Name=mRNA_M-pyrifera_M_contig107032.1500.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig107032:332..622- (Macrocystis pyrifera P11B4 male)
AACCTGGTGGAAGACATCGCGGATGTTGCCGAGCTCCTCGTCGGCTGCCC TGACCTGCGCGAGCTAGACTTGCGAGAAAACCCCGTCGCCAGCGTCGCCA AGTACCGCGACCGCGTCATCATGGCCACCGAGTACCTGGAACTGCTCGAC GGGAAGGAGGTGGACGAGAAACAGCGCGCGTTCCTGCTCCGGCTGCACGC CCGGAAGCGCGGTCGCGACCGCGGCCGCGGCGGCCGCAGCGCGGGAAGCC TAGGGGGAGGTGGAGCGGCCGACTTTGGACGCGGCGCCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107032:332..622-

>mRNA_M-pyrifera_M_contig107032.1500.1 ID=mRNA_M-pyrifera_M_contig107032.1500.1|Name=mRNA_M-pyrifera_M_contig107032.1500.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig107032:332..622- (Macrocystis pyrifera P11B4 male)
AACCTGGTGGAAGACATCGCGGATGTTGCCGAGCTCCTCGTCGGCTGCCC
TGACCTGCGCGAGCTAGACTTGCGAGAAAACCCCGTCGCCAGCGTCGCCA
AGTACCGCGACCGCGTCATCATGGCCACCGAGTACCTGGAACTGCTCGAC
GGGAAGGAGGTGGACGAGAAACAGCGCGCGTTCCTGCTCCGGCTGCACGC
CCGGAAGCGCGGTCGCGACCGCGGCCGCGGCGGCCGCAGCGCGGGAAGCC
TAGGGGGAGGTGGAGCGGCCGACTTTGGACGCGGCGCCGGCAACCTGGTG
GAAGACATCGCGGATGTTGCCGAGCTCCTCGTCGGCTGCCCTGACCTGCG
CGAGCTAGACTTGCGAGAAAACCCCGTCGCCAGCGTCGCCAAGTACCGCG
ACCGCGTCATCATGGCCACCGAGTACCTGGAACTGCTCGACGGGAAGGAG
GTGGACGAGAAACAGCGCGCGTTCCTGCTCCGGCTGCACGCCCGGAAGCG
CGGTCGCGACCGCGGCCGCGGCGGCCGCAGCGCGGGAAGCCTAGGGGGAG
GTGGAGCGGCCGACTTTGGACGCGGCGCCGGC
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