mRNA_M-pyrifera_M_contig107021.1499.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107021.1499.1
Unique NamemRNA_M-pyrifera_M_contig107021.1499.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Match: A0A8K0NBL9_COCNU (Putative Eukaryotic translation initiation factor 3 subunit D n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0NBL9_COCNU)

HSP 1 Score: 69.3 bits (168), Expect = 5.600e-14
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 QINVRPSNMWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDN 153
            QIN+  SNMWGI+K++VD+ M L EGKY+++KDP K    +Y+VP DAF+N
Sbjct:   33 QINLNTSNMWGIVKSIVDICMKLNEGKYVLVKDPAKPQIRIYKVPADAFEN 83
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BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Match: A0A6I9TJR1_SESIN (Eukaryotic translation initiation factor 3 subunit D n=3 Tax=Lamiales TaxID=4143 RepID=A0A6I9TJR1_SESIN)

HSP 1 Score: 73.6 bits (179), Expect = 9.280e-14
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 QINVRPSNMWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDN 153
            QIN+  SNMWGI+K++VDL M L EGKY+++KDP K    +Y VPQDAFDN
Sbjct:  487 QINLNTSNMWGIVKSIVDLCMKLKEGKYVLVKDPSKPQVRIYDVPQDAFDN 537
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BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Match: A0A022RS98_ERYGU (Eukaryotic translation initiation factor 3 subunit D n=6 Tax=Lamiales TaxID=4143 RepID=A0A022RS98_ERYGU)

HSP 1 Score: 73.6 bits (179), Expect = 9.280e-14
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 QINVRPSNMWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDN 153
            QIN+  SNMWGI+K++VDL M L EGKY+++KDP K    +Y VPQDAFDN
Sbjct:  487 QINLNTSNMWGIVKSIVDLCMKLKEGKYVLVKDPSKPQVRIYDVPQDAFDN 537
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BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Match: A0A4D9AW11_SALSN (Eukaryotic translation initiation factor 3 subunit D n=8 Tax=Lamiales TaxID=4143 RepID=A0A4D9AW11_SALSN)

HSP 1 Score: 73.6 bits (179), Expect = 9.280e-14
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 QINVRPSNMWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDN 153
            QIN+  SNMWGI+K++VDL M L EGKY+++KDP K    +Y VPQDAFDN
Sbjct:  487 QINLNTSNMWGIVKSIVDLCMKLKEGKYVLVKDPSKPQVRIYDVPQDAFDN 537
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BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Match: A0A183RPF1_9TREM (Uncharacterized protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183RPF1_9TREM)

HSP 1 Score: 69.3 bits (168), Expect = 1.230e-13
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 QINVRPSNMWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDN 153
            Q+N+   N WGI++ +VD FM +PEGKYLMLKDP K +  +Y VPQDA D+
Sbjct:   34 QLNLNMDNAWGILRCVVDFFMKMPEGKYLMLKDPNKPVLRIYSVPQDASDS 84
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BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Match: A0A176VGQ9_MARPO (Eukaryotic translation initiation factor 3 subunit D n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VGQ9_MARPO)

HSP 1 Score: 72.4 bits (176), Expect = 2.370e-13
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 QINVRPSNMWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDN 153
            QIN+  +NMWGI+KT+VD+ M L EGKYL++KDP K +  LY VP DAF+N
Sbjct:  476 QINLNVNNMWGILKTIVDICMKLDEGKYLLVKDPNKPIVRLYSVPPDAFEN 526
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BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Match: A9SLQ4_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SLQ4_PHYPA)

HSP 1 Score: 72.0 bits (175), Expect = 2.850e-13
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 QINVRPSNMWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDN 153
            QIN+  +NMWGI+KT+VD+ M L EGKYL++KDP K +  LY VP DAF+N
Sbjct:  319 QINLNVNNMWGILKTVVDMCMKLDEGKYLLVKDPNKPIVRLYSVPADAFEN 369
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BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Match: A9NUG7_PICSI (NARG2_C domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NUG7_PICSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.010e-13
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 QINVRPSNMWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDN 153
            QIN+  SNMWGI+K++VDLF+ L EGKY+++KDP K    +Y VP DAF+N
Sbjct:  326 QINLNTSNMWGIVKSIVDLFLKLNEGKYVLVKDPSKPQVRIYEVPTDAFEN 376
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BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Match: A0A2K1JPY4_PHYPA (Eukaryotic translation initiation factor 3 subunit D n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JPY4_PHYPA)

HSP 1 Score: 72.0 bits (175), Expect = 3.230e-13
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 QINVRPSNMWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDN 153
            QIN+  +NMWGI+KT+VD+ M L EGKYL++KDP K +  LY VP DAF+N
Sbjct:  475 QINLNVNNMWGILKTVVDMCMKLDEGKYLLVKDPNKPIVRLYSVPADAFEN 525
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BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Match: A0A4P1RM88_LUPAN (Eukaryotic translation initiation factor 3 subunit D n=5 Tax=Lupinus TaxID=3869 RepID=A0A4P1RM88_LUPAN)

HSP 1 Score: 72.0 bits (175), Expect = 3.230e-13
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 QINVRPSNMWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDN 153
            QIN+ P+NMWGI+K++VD+ M L EGKY+++KDP K    +Y+VP DAF+N
Sbjct:  474 QINLNPNNMWGIVKSIVDMCMKLDEGKYVLVKDPSKPQVRIYQVPADAFEN 524
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107021.1499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K0NBL9_COCNU5.600e-1456.86Putative Eukaryotic translation initiation factor ... [more]
A0A6I9TJR1_SESIN9.280e-1462.75Eukaryotic translation initiation factor 3 subunit... [more]
A0A022RS98_ERYGU9.280e-1462.75Eukaryotic translation initiation factor 3 subunit... [more]
A0A4D9AW11_SALSN9.280e-1462.75Eukaryotic translation initiation factor 3 subunit... [more]
A0A183RPF1_9TREM1.230e-1356.86Uncharacterized protein n=1 Tax=Schistosoma rodhai... [more]
A0A176VGQ9_MARPO2.370e-1360.78Eukaryotic translation initiation factor 3 subunit... [more]
A9SLQ4_PHYPA2.850e-1360.78Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A9NUG7_PICSI3.010e-1358.82NARG2_C domain-containing protein n=1 Tax=Picea si... [more]
A0A2K1JPY4_PHYPA3.230e-1360.78Eukaryotic translation initiation factor 3 subunit... [more]
A0A4P1RM88_LUPAN3.230e-1356.86Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107021contigM-pyrifera_M_contig107021:435..623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.9
Seed ortholog evalue6.9e-09
Seed eggNOG ortholog57918.XP_004295734.1
KEGG koko:K03251
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005852,GO:0005911,GO:0006412,GO:0006413,GO:0006464,GO:0006470,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0007154,GO:0007165,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010017,GO:0010019,GO:0010035,GO:0010038,GO:0010380,GO:0010467,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0019538,GO:0023052,GO:0030054,GO:0030176,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0042578,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046686,GO:0046906,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0065007,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071704,GO:0090056,GO:0097159,GO:0098827,GO:0104004,GO:0140096,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1901566,GO:1901576,GO:1902325
EggNOG free text desc.mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs
EggNOG OGs37KXQ@33090,3GDMM@35493,4JKQW@91835,KOG2479@1,KOG2479@2759
COG Functional cat.J
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Exons1
Model size189
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.080689-CDS-M-pyrifera_M_contig107021:434..5991622815580.080689-CDS-M-pyrifera_M_contig107021:434..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107021 435..599 -
1692277473.0712414-CDS-M-pyrifera_M_contig107021:434..5991692277473.0712414-CDS-M-pyrifera_M_contig107021:434..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107021 435..599 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.0931976-UTR-M-pyrifera_M_contig107021:599..6231622815580.0931976-UTR-M-pyrifera_M_contig107021:599..623Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107021 600..623 -
1692277473.081059-UTR-M-pyrifera_M_contig107021:599..6231692277473.081059-UTR-M-pyrifera_M_contig107021:599..623Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107021 600..623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107021.1499.1prot_M-pyrifera_M_contig107021.1499.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107021 435..599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107021.1499.1

>prot_M-pyrifera_M_contig107021.1499.1 ID=prot_M-pyrifera_M_contig107021.1499.1|Name=mRNA_M-pyrifera_M_contig107021.1499.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MWGIIKTLVDLFMNLPEGKYLMLKDPEKLLATLYRVPQDAFDNADDDEDY
DDDDE
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mRNA from alignment at M-pyrifera_M_contig107021:435..623-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107021.1499.1 ID=mRNA_M-pyrifera_M_contig107021.1499.1|Name=mRNA_M-pyrifera_M_contig107021.1499.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig107021:435..623- (Macrocystis pyrifera P11B4 male)
CAGATCAACGTGCGTCCCAGCAACATGTGGGGCATCATCAAGACCCTGGT
GGACCTCTTCATGAACCTTCCCGAGGGCAAGTACCTCATGCTGAAGGACC
CCGAGAAGCTCCTCGCCACCCTCTACCGGGTCCCGCAGGACGCGTTCGAC
AACGCCGACGACGACGAGGACTACGACGACGACGACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107021:435..623-

>mRNA_M-pyrifera_M_contig107021.1499.1 ID=mRNA_M-pyrifera_M_contig107021.1499.1|Name=mRNA_M-pyrifera_M_contig107021.1499.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig107021:435..623- (Macrocystis pyrifera P11B4 male)
ATGTGGGGCATCATCAAGACCCTGGTGGACCTCTTCATGAACCTTCCCGA
GGGCAAGTACCTCATGCTGAAGGACCCCGAGAAGCTCCTCGCCACCCTCT
ACCGGGTCCCGCAGGACGCGTTCGACAACGCCGACGACGACGAGGACTAC
GACGACGACGACGAGATGTGGGGCATCATCAAGACCCTGGTGGACCTCTT
CATGAACCTTCCCGAGGGCAAGTACCTCATGCTGAAGGACCCCGAGAAGC
TCCTCGCCACCCTCTACCGGGTCCCGCAGGACGCGTTCGACAACGCCGAC
GACGACGAGGACTACGACGACGACGACGAG
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