mRNA_M-pyrifera_M_contig107017.1498.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107017.1498.1
Unique NamemRNA_M-pyrifera_M_contig107017.1498.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107017.1498.1 vs. uniprot
Match: UPI000AE302E8 (hypothetical protein n=1 Tax=Mesorhizobium sp. 1M-11 TaxID=1529006 RepID=UPI000AE302E8)

HSP 1 Score: 60.1 bits (144), Expect = 4.970e-8
Identity = 58/175 (33.14%), Postives = 83/175 (47.43%), Query Frame = 1 
Query:    1 YLVIGLSTVVFGFGAILNHLLNTPVNISALISTGTTHQQPGALDDDAPSKNTDLNSIEFASTLNRPLFNRDRRKFVKPPPPKVQKIPVVKSXXXXXXXXAKPVEPHLPD-PVFALLGISIAEGKSSALLSQNGGENV-WVSSGDLIKTWKIADIGENHVLLELGNREISLFLYDD 519
            +L++ L T +   G +   L   P   S + +   ++Q     DD   S +  L S  ++ T  RPLFN  RRK    P P     P+V     XXXXX       L   P  ALLG+S+ +  S ALL  +G +   W  +G+ I  W I  I +  V L+ G++ ISLFLY +
Sbjct:    5 FLILLLGTSLATLGMVNLGLYGRPATTSPVHADPRSNQGKPPADDKTLSTSL-LGSAGYSETFERPLFNPTRRK----PIP----APIVADAPPXXXXXXXXXXXXLSQAPAPALLGVSVTQATSKALLLASGKQEANWFQNGETIDDWSIVSITKEEVALQRGDQSISLFLYPE 170
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107017.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000AE302E84.970e-833.14hypothetical protein n=1 Tax=Mesorhizobium sp. 1M-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107017contigM-pyrifera_M_contig107017:83..613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size531
Cds size531
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.044766-CDS-M-pyrifera_M_contig107017:82..6131622815580.044766-CDS-M-pyrifera_M_contig107017:82..613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107017 83..613 -
1692277473.0593648-CDS-M-pyrifera_M_contig107017:82..6131692277473.0593648-CDS-M-pyrifera_M_contig107017:82..613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107017 83..613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107017.1498.1prot_M-pyrifera_M_contig107017.1498.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107017 83..613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107017.1498.1

>prot_M-pyrifera_M_contig107017.1498.1 ID=prot_M-pyrifera_M_contig107017.1498.1|Name=mRNA_M-pyrifera_M_contig107017.1498.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
YLVIGLSTVVFGFGAILNHLLNTPVNISALISTGTTHQQPGALDDDAPSK
NTDLNSIEFASTLNRPLFNRDRRKFVKPPPPKVQKIPVVKSPPVKPPPIA
KPVEPHLPDPVFALLGISIAEGKSSALLSQNGGENVWVSSGDLIKTWKIA
DIGENHVLLELGNREISLFLYDDSGR*
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mRNA from alignment at M-pyrifera_M_contig107017:83..613-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107017.1498.1 ID=mRNA_M-pyrifera_M_contig107017.1498.1|Name=mRNA_M-pyrifera_M_contig107017.1498.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig107017:83..613- (Macrocystis pyrifera P11B4 male)
TACCTAGTCATCGGTCTTTCTACAGTCGTTTTCGGATTTGGAGCGATATT
GAATCATCTCCTCAACACACCGGTGAACATTTCAGCACTGATCAGCACCG
GTACAACTCATCAACAACCTGGCGCCTTGGACGACGACGCGCCTTCCAAA
AACACGGATCTCAATTCTATCGAATTCGCGTCAACGCTCAATCGTCCTCT
GTTTAATCGCGACCGGAGAAAGTTCGTAAAACCTCCACCTCCAAAGGTTC
AAAAAATTCCAGTGGTCAAGTCACCACCAGTCAAACCACCGCCAATAGCC
AAACCTGTTGAACCGCATCTACCCGATCCGGTCTTCGCCTTGCTAGGAAT
CAGCATTGCCGAGGGAAAGTCGAGTGCATTGCTGTCACAGAATGGTGGAG
AAAACGTCTGGGTGTCCTCAGGCGATCTAATCAAAACCTGGAAGATCGCC
GACATTGGTGAAAATCATGTTCTGTTGGAGCTCGGGAACCGCGAAATCAG
TCTGTTCTTGTATGACGATAGCGGCAGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107017:83..613-

>mRNA_M-pyrifera_M_contig107017.1498.1 ID=mRNA_M-pyrifera_M_contig107017.1498.1|Name=mRNA_M-pyrifera_M_contig107017.1498.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig107017:83..613- (Macrocystis pyrifera P11B4 male)
TACCTAGTCATCGGTCTTTCTACAGTCGTTTTCGGATTTGGAGCGATATT
GAATCATCTCCTCAACACACCGGTGAACATTTCAGCACTGATCAGCACCG
GTACAACTCATCAACAACCTGGCGCCTTGGACGACGACGCGCCTTCCAAA
AACACGGATCTCAATTCTATCGAATTCGCGTCAACGCTCAATCGTCCTCT
GTTTAATCGCGACCGGAGAAAGTTCGTAAAACCTCCACCTCCAAAGGTTC
AAAAAATTCCAGTGGTCAAGTCACCACCAGTCAAACCACCGCCAATAGCC
AAACCTGTTGAACCGCATCTACCCGATCCGGTCTTCGCCTTGCTAGGAAT
CAGCATTGCCGAGGGAAAGTCGAGTGCATTGCTGTCACAGAATGGTGGAG
AAAACGTCTGGGTGTCCTCAGGCGATCTAATCAAAACCTGGAAGATCGCC
GACATTGGTGAAAATCATGTTCTGTTGGAGCTCGGGAACCGCGAAATCAG
TCTGTTCTTGTATGACGATAGCGGCAGATGATACCTAGTCATCGGTCTTT
CTACAGTCGTTTTCGGATTTGGAGCGATATTGAATCATCTCCTCAACACA
CCGGTGAACATTTCAGCACTGATCAGCACCGGTACAACTCATCAACAACC
TGGCGCCTTGGACGACGACGCGCCTTCCAAAAACACGGATCTCAATTCTA
TCGAATTCGCGTCAACGCTCAATCGTCCTCTGTTTAATCGCGACCGGAGA
AAGTTCGTAAAACCTCCACCTCCAAAGGTTCAAAAAATTCCAGTGGTCAA
GTCACCACCAGTCAAACCACCGCCAATAGCCAAACCTGTTGAACCGCATC
TACCCGATCCGGTCTTCGCCTTGCTAGGAATCAGCATTGCCGAGGGAAAG
TCGAGTGCATTGCTGTCACAGAATGGTGGAGAAAACGTCTGGGTGTCCTC
AGGCGATCTAATCAAAACCTGGAAGATCGCCGACATTGGTGAAAATCATG
TTCTGTTGGAGCTCGGGAACCGCGAAATCAGTCTGTTCTTGTATGACGAT
AGCGGCAGATGA
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