mRNA_M-pyrifera_M_contig10692.1483.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10692.1483.1
Unique NamemRNA_M-pyrifera_M_contig10692.1483.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10692.1483.1 vs. uniprot
Match: D7G479_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G479_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 2.010e-82
Identity = 190/340 (55.88%), Postives = 212/340 (62.35%), Query Frame = 1 
Query:    1 QVKLFHMAKPVNPSLPPPPLDDAGEGGEDNQPGLALXXXXXVESTAS-----TSLSLSSPS-ASPKAKSSLFAPPKPAGQGPAAAIQNGGLRSGXXXXXX---TDRHWGS-------SGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRAPLGGSRLFKGFEKTETVVRXXXXXXXXXXXXXXXXXLSPPGEGAHLTFRYPKDIWPGHKPPNLADDSSGANGAGGGYNGGGEEVLEFFCDGCDDTIPNGIERMECAVCPDEFCLCHSCYDEGEVLDKRHKHELLPSAAPFHVTRAAPSAEAAVAAAKALHVTEAQEEEANEWHESYDDDDLG 972
            +VKLFHMAKPVNPS+PPP +DD GE    +QPGLAL     VES++S     +S S +SPS AS  + S+ F  P        A I NGG  S          +D   GS       SGD                                   GR  +G SRLFKGFEKTETVVRXXXXXXXXXXXXXXXX + P GEG H+T RYPKDIWPGHKPPN      GAN    G   G EE LEFFCDGCD+TIP+G+ERMECAVCPDEFCLCH+CYDEGEVLDKRHKHELLPSAAPFHVTRAAPSA AA+ AAKALHV EA   +      +YD+ DLG
Sbjct:   30 EVKLFHMAKPVNPSIPPPVVDDGGEDAA-SQPGLALLGLLGVESSSSLPASTSSFSAASPSPASVDSSSTTFHAPVGG-----AGIVNGGDNSHPSTTSAQLPSDVQGGSFVGSSSHSGDGPGGTEGGPA------------------------TGRT-VGASRLFKGFEKTETVVRXXXXXXXXXXXXXXXX-IPPSGEGEHVTHRYPKDIWPGHKPPNHIVGGEGAND---GERAGDEEQLEFFCDGCDETIPSGVERMECAVCPDEFCLCHACYDEGEVLDKRHKHELLPSAAPFHVTRAAPSAAAALEAAKALHVAEAHHGQGL----AYDEADLG 330
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10692.1483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G479_ECTSI2.010e-8255.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10692contigM-pyrifera_M_contig10692:7698..9591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_001620.1
Exons4
Model size975
Cds size957
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10692.1483.1prot_M-pyrifera_M_contig10692.1483.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10692 7698..9573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.9812725-CDS-M-pyrifera_M_contig10692:7697..78771622815578.9812725-CDS-M-pyrifera_M_contig10692:7697..7877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10692 7698..7877 -
1692277472.5061572-CDS-M-pyrifera_M_contig10692:7697..78771692277472.5061572-CDS-M-pyrifera_M_contig10692:7697..7877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10692 7698..7877 -
1622815578.9990034-CDS-M-pyrifera_M_contig10692:8568..86931622815578.9990034-CDS-M-pyrifera_M_contig10692:8568..8693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10692 8569..8693 -
1692277472.5204296-CDS-M-pyrifera_M_contig10692:8568..86931692277472.5204296-CDS-M-pyrifera_M_contig10692:8568..8693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10692 8569..8693 -
1622815579.011548-CDS-M-pyrifera_M_contig10692:8729..88271622815579.011548-CDS-M-pyrifera_M_contig10692:8729..8827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10692 8730..8827 -
1692277472.5317557-CDS-M-pyrifera_M_contig10692:8729..88271692277472.5317557-CDS-M-pyrifera_M_contig10692:8729..8827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10692 8730..8827 -
1622815579.025598-CDS-M-pyrifera_M_contig10692:9019..95731622815579.025598-CDS-M-pyrifera_M_contig10692:9019..9573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10692 9020..9573 -
1692277472.5422406-CDS-M-pyrifera_M_contig10692:9019..95731692277472.5422406-CDS-M-pyrifera_M_contig10692:9019..9573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10692 9020..9573 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.0403156-UTR-M-pyrifera_M_contig10692:9573..95911622815579.0403156-UTR-M-pyrifera_M_contig10692:9573..9591Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10692 9574..9591 -
1692277472.55182-UTR-M-pyrifera_M_contig10692:9573..95911692277472.55182-UTR-M-pyrifera_M_contig10692:9573..9591Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10692 9574..9591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10692.1483.1

>prot_M-pyrifera_M_contig10692.1483.1 ID=prot_M-pyrifera_M_contig10692.1483.1|Name=mRNA_M-pyrifera_M_contig10692.1483.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=319bp
MAKPVNPSLPPPPLDDAGEGGEDNQPGLALLGILGVESTASTSLSLSSPS
ASPKAKSSLFAPPKPAGQGPAAAIQNGGLRSGGGGSTTTDRHWGSSGDDG
SVGSGNSSYSTTTVTTASATSSSGGDGGEGGGAGRAPLGGSRLFKGFEKT
ETVVRRKKLAVPPPPPPGTPPPLSPPGEGAHLTFRYPKDIWPGHKPPNLA
DDSSGANGAGGGYNGGGEEVLEFFCDGCDDTIPNGIERMECAVCPDEFCL
CHSCYDEGEVLDKRHKHELLPSAAPFHVTRAAPSAEAAVAAAKALHVTEA
QEEEANEWHESYDDDDLG*
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mRNA from alignment at M-pyrifera_M_contig10692:7698..9591-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10692.1483.1 ID=mRNA_M-pyrifera_M_contig10692.1483.1|Name=mRNA_M-pyrifera_M_contig10692.1483.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1894bp|location=Sequence derived from alignment at M-pyrifera_M_contig10692:7698..9591- (Macrocystis pyrifera P11B4 male)
CAGGTGAAGCTCTTCCACATGGCCAAGCCGGTGAACCCGTCGCTCCCACC
ACCCCCGCTGGACGACGCGGGGGAGGGAGGCGAGGACAACCAGCCGGGGC
TCGCTCTCCTGGGCATCCTGGGCGTGGAGTCGACAGCCTCGACGTCTCTG
TCTTTGTCTTCGCCGTCGGCGTCCCCTAAGGCGAAATCCTCCTTGTTTGC
CCCTCCAAAACCTGCCGGGCAAGGGCCAGCGGCCGCAATACAAAACGGAG
GCCTGAGGTCGGGTGGAGGGGGCTCTACAACGACAGACCGGCATTGGGGC
AGTAGTGGCGATGATGGCAGTGTCGGTAGCGGCAACAGCAGCTACAGTAC
CACTACCGTCACCACGGCCTCCGCCACCAGCAGCAGTGGCGGGGATGGGG
GAGAGGGGGGAGGGGCCGGGCGTGCCCCCCTCGGGGGGAGTAGGCTGTTT
AAGGGTTTCGAGAAAACGGAAACCGTGGTGAGGAGGAAGAAGTTAGCTGT
GCCGCCGCCTCCGCCACCAGGAACGCCCCCGCCCTTGTCGCCTCCAGGGG
AAGGGGCTCATCTGACTTTTCGGTGAGGGGTGGGAGTGGGGTGGGATGAG
CACTTATTTCAAAATGTCAAATGTCGCGTTTCGTTATATTTTTATGTCAC
GCCTCGTCTTTTTTTCTTTCGCTAGAAACGGGCCTGACGGCACGCGAATA
CAACAAGGCCCACGTTTCTGAGAATCACTCCCCGCGCTTTCTTGTGCACC
ATTCACCCACGCAGATATCCAAAAGACATCTGGCCGGGGCATAAGCCCCC
AAACCTCGCCGACGACAGTAGTGGCGCTAACGGGGCGGGGGGCGGATACA
ACGGGGGAGGCGGTGGTGGGGGCGGGGGAGAGGGAGGGTTGGCGGCAGAA
GAAGTACTGGAGTTTTTTTGCGATGGCTGCGATGACACTATCCCGAATGG
AATCGAGCGTATGGAGTGCGCGGTGTGCCCGGACGAATTTTGCCTCTGTC
ACAGCTGCTACGACGAGGGAGAGGTAAGAAATGCCCGCAGGGGCAAGGAC
GCACGGCGCGCGCACAGACAAGGCAGTGGTTTCTTGTGGCTGTACTGTAC
GGTAGGGGGGGGGATACTCCCTGAGGCATCCCTTACTTTTGGCTACCGGG
TCTAGGCCACTCGTGCGACTGGCTCTGCACCTCACTCAAAATTGGATTTT
GAGCTATTTTTTGGTGGCGCAGCGTAGTAGCTAACGATCCCCTGGTCGTG
CGTGCATATACATCGCGAAACCGAAATGCACAAAGGTATAAGGCTGCAAA
GAAACAGGGTAAGAGACTCGCGCGGGTGGCTCTGCGCCGCTGAAAACGAA
TACCCGTGAAGTGATCGCTCCACCGTCTCTCGGGGGTTAGGCACCTTGCC
TTGCATGTAGTCTGGCCACTGCATGTATCATCCTCCCATCCCGTACGTAC
TCCGGGTTGCTGCGTGTGGCGAAAACTGTACATGATAAAAACAAATCGTC
CGTTTTCCCTCCTGAGGCCCCAAAAGGATTAATATCTTTGCTTGCAAGCA
CTCCACTAACGTTACACCTATTCTGCACGCCTTGAATCCTCCTGTGAATG
CCACACGCCTAACGTTACACCTATTCTGCACGCCTTGAATCCTCCTGTGA
ATGCCACACGCCTTCCTAGTAAAACACGCCCTCCTGTGAATGACACGCAA
TTTTGTCACCGCAGGTCCTCGATAAGCGGCACAAGCATGAGCTTCTACCC
TCGGCCGCCCCGTTTCACGTAACGAGAGCCGCGCCGAGCGCAGAGGCGGC
AGTAGCGGCGGCGAAAGCGCTGCACGTGACAGAAGCACAAGAAGAGGAAG
CTAACGAGTGGCACGAGAGCTACGACGATGACGATCTAGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10692:7698..9591-

>mRNA_M-pyrifera_M_contig10692.1483.1 ID=mRNA_M-pyrifera_M_contig10692.1483.1|Name=mRNA_M-pyrifera_M_contig10692.1483.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1914bp|location=Sequence derived from alignment at M-pyrifera_M_contig10692:7698..9591- (Macrocystis pyrifera P11B4 male)
ATGGCCAAGCCGGTGAACCCGTCGCTCCCACCACCCCCGCTGGACGACGC
GGGGGAGGGAGGCGAGGACAACCAGCCGGGGCTCGCTCTCCTGGGCATCC
TGGGCGTGGAGTCGACAGCCTCGACGTCTCTGTCTTTGTCTTCGCCGTCG
GCGTCCCCTAAGGCGAAATCCTCCTTGTTTGCCCCTCCAAAACCTGCCGG
GCAAGGGCCAGCGGCCGCAATACAAAACGGAGGCCTGAGGTCGGGTGGAG
GGGGCTCTACAACGACAGACCGGCATTGGGGCAGTAGTGGCGATGATGGC
AGTGTCGGTAGCGGCAACAGCAGCTACAGTACCACTACCGTCACCACGGC
CTCCGCCACCAGCAGCAGTGGCGGGGATGGGGGAGAGGGGGGAGGGGCCG
GGCGTGCCCCCCTCGGGGGGAGTAGGCTGTTTAAGGGTTTCGAGAAAACG
GAAACCGTGGTGAGGAGGAAGAAGTTAGCTGTGCCGCCGCCTCCGCCACC
AGGAACGCCCCCGCCCTTGTCGCCTCCAGGGGAAGGGGCTCATCTGACTT
TTCGATGGCCAAGCCGGTGAACCCGTCGCTCCCACCACCCCCGCTGGACG
ACGCGGGGGAGGGAGGCGAGGACAACCAGCCGGGGCTCGCTCTCCTGGGC
ATCCTGGGCGTGGAGTCGACAGCCTCGACGTCTCTGTCTTTGTCTTCGCC
GTCGGCGTCCCCTAAGGCGAAATCCTCCTTGTTTGCCCCTCCAAAACCTG
CCGGGCAAGGGCCAGCGGCCGCAATACAAAACGGAGGCCTGAGGTCGGGT
GGAGGGGGCTCTACAACGACAGACCGGCATTGGGGCAGTAGTGGCGATGA
TGGCAGTGTCGGTAGCGGCAACAGCAGCTACAGTACCACTACCGTCACCA
CGGCCTCCGCCACCAGCAGCAGTGGCGGGGATGGGGGAGAGGGGGGAGGG
GCCGGGCGTGCCCCCCTCGGGGGGAGTAGGCTGTTTAAGGGTTTCGAGAA
AACGGAAACCGTGGTGAGGAGGAAGAAGTTAGCTGTGCCGCCGCCTCCGC
CACCAGGAACGCCCCCGCCCTTGTCGCCTCCAGGGGAAGGGGCTCATCTG
ACTTTTCGATATCCAAAAGACATCTGGCCGGGGCATAAGCCCCCAAACCT
CGCCGACGACAGTAGTGGCGCTAACGGGGCGGGGGGCGGATACAACGGGG
GAGGCGATATCCAAAAGACATCTGGCCGGGGCATAAGCCCCCAAACCTCG
CCGACGACAGTAGTGGCGCTAACGGGGCGGGGGGCGGATACAACGGGGGA
GGCGAAGAAGTACTGGAGTTTTTTTGCGATGGCTGCGATGACACTATCCC
GAATGGAATCGAGCGTATGGAGTGCGCGGTGTGCCCGGACGAATTTTGCC
TCTGTCACAGCTGCTACGACGAGGGAGAGAAGAAGTACTGGAGTTTTTTT
GCGATGGCTGCGATGACACTATCCCGAATGGAATCGAGCGTATGGAGTGC
GCGGTGTGCCCGGACGAATTTTGCCTCTGTCACAGCTGCTACGACGAGGG
AGAGGTCCTCGATAAGCGGCACAAGCATGAGCTTCTACCCTCGGCCGCCC
CGTTTCACGTAACGAGAGCCGCGCCGAGCGCAGAGGCGGCAGTAGCGGCG
GCGAAAGCGCTGCACGTGACAGAAGCACAAGAAGAGGAAGCTAACGAGTG
GCACGAGAGCTACGACGATGACGATCTAGGATGAGTCCTCGATAAGCGGC
ACAAGCATGAGCTTCTACCCTCGGCCGCCCCGTTTCACGTAACGAGAGCC
GCGCCGAGCGCAGAGGCGGCAGTAGCGGCGGCGAAAGCGCTGCACGTGAC
AGAAGCACAAGAAGAGGAAGCTAACGAGTGGCACGAGAGCTACGACGATG
ACGATCTAGGATGA
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