mRNA_M-pyrifera_M_contig106918.1481.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106918.1481.1
Unique NamemRNA_M-pyrifera_M_contig106918.1481.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Match: A0A7S4MAC3_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MAC3_9EUKA)

HSP 1 Score: 145 bits (367), Expect = 1.970e-37
Identity = 149/180 (82.78%), Postives = 161/180 (89.44%), Query Frame = 1 
Query:    7 DTSRADDLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGHEMDIYSLXXXXXXXXXXXXXXXXXXXXXXXDKRKCVFTLGNDEVGPKDGVTSVAIXXXXXXXXXXXXXXXXXXXXAHTGYFLERYEGHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSRCRSTFT 546
            DTS   DLYLRS+CFSP G+YLACG ED+TVKLWDI ++E+ H F GH MDIYS+ XXXXXXXXXXXXXXXXXXXXXX   +C++TLGNDEVGPKDGVTS   XXXXXXXXXXXXXXXXXXXXA TGYFLERYEGH XXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRS+CRSTF+
Sbjct:  303 DTSGTGDLYLRSLCFSPDGKYLACGAEDRTVKLWDIEKQEMHHTFTGHNMDIYSVDXXXXXXXXXXXXXXXXXXXXXXXXXQCLYTLGNDEVGPKDGVTSXXXXXXXXXXXXXXXXXXXXXXXAQTGYFLERYEGHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSQCRSTFS 482
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BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Match: A0A152A121_9MYCE (Transcriptional repressor TUP1 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A121_9MYCE)

HSP 1 Score: 133 bits (335), Expect = 6.510e-33
Identity = 144/181 (79.56%), Postives = 156/181 (86.19%), Query Frame = 1 
Query:    1 LHDTSRADDLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGHEMDIYSLXXXXXXXXXXXXXXXXXXXXXXXDKRKCVFTLGNDEVGPKDGVTSVAIXXXXXXXXXXXXXXXXXXXXAHTGYFLERYEGHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSRCRSTF 543
            + D+ +  DLY+RSVCFSP GQ+LA G EDKTVK+WDI  ++I   F GHE+DIY  XXXXXXXXXXXXXXXXXXXXXXX K KC+FTLGNDEVGPK+GVTSVA+XXXXXXXXXXXXXXXXXXXX  TGYFLERYEGH    XXXXXXXXXXXXXXXXXXXXXXXXXLS  RSRSRCRSTF
Sbjct:  301 IDDSDKEVDLYIRSVCFSPDGQFLATGAEDKTVKVWDIHSKKIQQTFTGHELDIYXXXXXXXXXXXXXXXXXXXXXXXXXXKGKCLFTLGNDEVGPKNGVTSVAMXXXXXXXXXXXXXXXXXXXXXXTGYFLERYEGHLDSVXXXXXXXXXXXXXXXXXXXXXXXXXLSGVRSRSRCRSTF 481
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BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Match: L8HEZ3_ACACA (Transcriptional repressor TUP1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HEZ3_ACACA)

HSP 1 Score: 124 bits (312), Expect = 1.300e-29
Identity = 140/179 (78.21%), Postives = 154/179 (86.03%), Query Frame = 1 
Query:    7 DTSRADDLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGHEMDIYSLXXXXXXXXXXXXXXXXXXXXXXXDKRKCVFTLGNDEVGPKDGVTSVAIXXXXXXXXXXXXXXXXXXXXAHTGYFLERYEGHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSRCRSTF 543
            + ++  DLY+RSVCFSP G+YLA G EDKTVK+WDI ++ I + F GHE+DIY  XXXXXXXXXXXXXXXXXXXXXXX   KC+FTLGND+VGPKDGVTSV  XXXXXXXXXXXXXXXXXXXX   GYFLERYEGH XXXXXXXXXXXXXXXXXXXXXXXXXXXX+   R+RSRCRSTF
Sbjct:  347 ENAKDGDLYIRSVCFSPDGKYLAAGAEDKTVKVWDIEKKTIKYTFVGHELDIYXXXXXXXXXXXXXXXXXXXXXXXXXXSGKCLFTLGNDDVGPKDGVTSVXXXXXXXXXXXXXXXXXXXXXXXXXGYFLERYEGHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXICNPRARSRCRSTF 525
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BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Match: F4PP30_CAVFA (Transcriptional repressor TUP1 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PP30_CAVFA)

HSP 1 Score: 122 bits (306), Expect = 6.130e-29
Identity = 138/179 (77.09%), Postives = 151/179 (84.36%), Query Frame = 1 
Query:    7 DTSRADDLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGHEMDIYSLXXXXXXXXXXXXXXXXXXXXXXXDKRKCVFTLGNDEVGPKDGVTSVAIXXXXXXXXXXXXXXXXXXXXAHTGYFLERYEGHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSRCRSTF 543
            D+ R  DLY+RSVC            EDKTVK+WDIA ++I H+F GHE+DIYSLXXXXXXXXXXXXXXXXXXXXXXX   KC+FTLGN+EVGPK+GVTSVA XXXXXXXXXXXXXXXXXXXX H+GYFLERYEGH    XXXXXXXXXXXXXXXXXXXXXXXXXLS SRSRSRC++TF
Sbjct:  284 DSEREGDLYIRSVCXXXXXXXXXXXXEDKTVKVWDIAHKKIHHIFTGHELDIYSLXXXXXXXXXXXXXXXXXXXXXXXKDGKCLFTLGNEEVGPKNGVTSVAXXXXXXXXXXXXXXXXXXXXXXHSGYFLERYEGHLDSVXXXXXXXXXXXXXXXXXXXXXXXXXLSGSRSRSRCKATF 462
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BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Match: D3B1H0_POLPP (Transcriptional repressor TUP1 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B1H0_POLPP)

HSP 1 Score: 121 bits (304), Expect = 1.220e-28
Identity = 140/179 (78.21%), Postives = 150/179 (83.80%), Query Frame = 1 
Query:    7 DTSRADDLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGHEMDIYSLXXXXXXXXXXXXXXXXXXXXXXXDKRKCVFTLGNDEVGPKDGVTSVAIXXXXXXXXXXXXXXXXXXXXAHTGYFLERYEGHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSRCRSTF 543
            D  +  DLY+RSVC            EDKTVK+WDIA+ +I  VF GHE+DIY  XXXXXXXXXXXXXXXXXXXXXXX + KC FTLGN+EVGPK+GVTSVAIXXXXXXXXXXXXXXXXXXXXAH+GYFLERYEGH   XXXXXXXXXXXXXXXXXXXXXXXXXXLS SRSRSRCRSTF
Sbjct:  290 DGEKEGDLYIRSVCXXXXXXXXXXXAEDKTVKVWDIAQRKIQQVFTGHELDIYXXXXXXXXXXXXXXXXXXXXXXXXXKEGKCAFTLGNEEVGPKNGVTSVAIXXXXXXXXXXXXXXXXXXXXAHSGYFLERYEGHMDSXXXXXXXXXXXXXXXXXXXXXXXXXXLSGSRSRSRCRSTF 468
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BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Match: UPI0006447C10 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006447C10)

HSP 1 Score: 118 bits (296), Expect = 1.340e-27
Identity = 136/180 (75.56%), Postives = 149/180 (82.78%), Query Frame = 1 
Query:    7 DTSRADDLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGHEMDIYSLXXXXXXXXXXXXXXXXXXXXXXXDKRKCVFTLGNDEVGPKDGVTSVAIXXXXXXXXXXXXXXXXXXXXAHTGYFLERYEGHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSRCRSTFT 546
            D  +  DLY+RSVC            ED+TVK+WDIA +++   F GHE+DIY  XXXXXXXXXXXXXXXXXXXXXX  + +C FTLGN+EVGPK+GVTSVAIXXXXXXXXXXXXXXXXXXXXAH+GYFLERYEGH   XXXXXXXXXXXXXXXXXXXXXXXXXXLS SRSRSRCRSTFT
Sbjct:  266 DGDKEGDLYIRSVCXXXXXXXXXXXAEDRTVKVWDIAHKKVHQKFSGHELDIYXXXXXXXXXXXXXXXXXXXXXXXXLKEGRCAFTLGNEEVGPKNGVTSVAIXXXXXXXXXXXXXXXXXXXXAHSGYFLERYEGHMDSXXXXXXXXXXXXXXXXXXXXXXXXXXLSGSRSRSRCRSTFT 445
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BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Match: A0A2P6MSG1_9EUKA (Transcriptional repressor TUP1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MSG1_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 4.400e-27
Identity = 138/181 (76.24%), Postives = 149/181 (82.32%), Query Frame = 1 
Query:    7 DTSRADDLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGHEMDIYSLXXXXXXXXXXXXXXXXXXXXXXXDKRKCVFTLGNDEVGPKDGVTSVAIXXXXXXXXXXXXXXXXXXXXAHTGYFLERYEGH-QXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSRCRSTFT 546
            D  +  DLY+RSVCFSP  ++LA G EDKTVK+WD+    + H F GH  DIYSL XXXXXXXXXXXXXXXXXXXXX  K++CVFTLGNDEVGPKDGVTS   XXXXXXXXXXXXXXXXXXXX  +GYFLERYEGH  XXXXXXXXXXXXXXXXXXXXXXXXXXXX    + RSRCRSTFT
Sbjct:  304 DPGKDGDLYIRSVCFSPDNKFLAVGAEDKTVKVWDVENRCMHHTFAGHGSDIYSLDXXXXXXXXXXXXXXXXXXXXXLKKQECVFTLGNDEVGPKDGVTSXXXXXXXXXXXXXXXXXXXXXXXTTSGYFLERYEGHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGKGRSRCRSTFT 484
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BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Match: TUP1_DICDI (General transcriptional corepressor tupA n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TUP1_DICDI)

HSP 1 Score: 117 bits (293), Expect = 4.780e-27
Identity = 139/180 (77.22%), Postives = 148/180 (82.22%), Query Frame = 1 
Query:    7 DTSRAD-DLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGHEMDIYSLXXXXXXXXXXXXXXXXXXXXXXXDKRKCVFTLGNDEVGPKDGVTSVAIXXXXXXXXXXXXXXXXXXXXAHTGYFLERYEGHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSRCRSTF 543
            D S  D DLY+RSVCF         G EDKTVK+WDI  ++I H F GHE+DIY  XXXXXXXXXXXXXXXXXXXXXXX   KC FTLGN+EVGPK+GVTSVA+XXXXXXXXXXXXXXXXXXXX  TGYFLERYEGH    XXXXXXXXXXXXXXXXXXXXXXXXXLS SRSRSRCR+TF
Sbjct:  320 DESEKDGDLYIRSVCFXXXXXXXXXGAEDKTVKVWDIHTKKIQHTFYGHELDIYXXXXXXXXXXXXXXXXXXXXXXXXXXXGKCAFTLGNEEVGPKNGVTSVAMXXXXXXXXXXXXXXXXXXXXXQTGYFLERYEGHLDSVXXXXXXXXXXXXXXXXXXXXXXXXXLSGSRSRSRCRATF 499
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BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Match: F0ZGW0_DICPU (Tup_N domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZGW0_DICPU)

HSP 1 Score: 110 bits (275), Expect = 1.140e-24
Identity = 133/179 (74.30%), Postives = 146/179 (81.56%), Query Frame = 1 
Query:    7 DTSRADDLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGHEMDIYSLXXXXXXXXXXXXXXXXXXXXXXXDKRKCVFTLGNDEVGPKDGVTSVAIXXXXXXXXXXXXXXXXXXXXAHTGYFLERYEGHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSRCRSTF 543
            ++ +  DLY+RSVCF         G EDKTVK+WDI  ++I H F GHE+DIY  XXXXXXXXXXXXXXXXXXXXXXX      +TLGN+EVGPK+GVTSVA+XXXXXXXXXXXXXXXXXXXX  TGYFLERYEGH    XXXXXXXXXXXXXXXXXXXXXXXXXLS SRSRSRCR+TF
Sbjct:  273 ESDKDGDLYIRSVCFXXXXXXXXXGAEDKTVKVWDIHSKKIQHTFYGHELDIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYTLGNEEVGPKNGVTSVAMXXXXXXXXXXXXXXXXXXXXXQTGYFLERYEGHLDSVXXXXXXXXXXXXXXXXXXXXXXXXXLSGSRSRSRCRATF 451
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BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Match: A0A8J4PWZ2_9MYCE (Tup_N domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PWZ2_9MYCE)

HSP 1 Score: 107 bits (266), Expect = 2.120e-23
Identity = 129/181 (71.27%), Postives = 146/181 (80.66%), Query Frame = 1 
Query:    1 LHDTSRADDLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGHEMDIYSLXXXXXXXXXXXXXXXXXXXXXXXDKRKCVFTLGNDEVGPKDGVTSVAIXXXXXXXXXXXXXXXXXXXXAHTGYFLERYEGHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSESRSRSRCRSTF 543
            + +  +  DLY+RSVCF           EDKTVK+WDI  +++ + F+GH++D    XXXXXXXXXXXXXXXXXXXXXXX   KC FTLGN+EVGPK+GVTSVA+XXXXXXXXXXXXXXXXXXXX  TGYFLERYEGH    XXXXXXXXXXXXXXXXXXXXXXXXXLS +RSRSRCR+TF
Sbjct:  292 IDENDKEGDLYIRSVCFXXXXXXXXXXAEDKTVKVWDIQNKKVLNTFQGHDLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKCAFTLGNEEVGPKNGVTSVAMXXXXXXXXXXXXXXXXXXXXXQTGYFLERYEGHLDSVXXXXXXXXXXXXXXXXXXXXXXXXXLSGTRSRSRCRATF 472
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106918.1481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MAC3_9EUKA1.970e-3782.78Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A152A121_9MYCE6.510e-3379.56Transcriptional repressor TUP1 n=1 Tax=Tieghemoste... [more]
L8HEZ3_ACACA1.300e-2978.21Transcriptional repressor TUP1, putative n=1 Tax=A... [more]
F4PP30_CAVFA6.130e-2977.09Transcriptional repressor TUP1 n=1 Tax=Cavenderia ... [more]
D3B1H0_POLPP1.220e-2878.21Transcriptional repressor TUP1 n=1 Tax=Polysphondy... [more]
UPI0006447C101.340e-2775.56hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2P6MSG1_9EUKA4.400e-2776.24Transcriptional repressor TUP1 n=1 Tax=Planoprotos... [more]
TUP1_DICDI4.780e-2777.22General transcriptional corepressor tupA n=1 Tax=D... [more]
F0ZGW0_DICPU1.140e-2474.30Tup_N domain-containing protein n=1 Tax=Dictyostel... [more]
A0A8J4PWZ2_9MYCE2.120e-2371.27Tup_N domain-containing protein n=1 Tax=Polysphond... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106918contigM-pyrifera_M_contig106918:12..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue7.4e-24
Seed eggNOG ortholog44689.DDB0214909
Preferred nameTUP1
KEGG koko:K06666
KEGG Pathwayko04011,ko04111,map04011,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000228,GO:0000429,GO:0000430,GO:0000433,GO:0000785,GO:0000790,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0006996,GO:0007154,GO:0007155,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008289,GO:0009267,GO:0009372,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019747,GO:0019899,GO:0022414,GO:0022607,GO:0022610,GO:0030154,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0033554,GO:0033993,GO:0034728,GO:0035091,GO:0035690,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0036166,GO:0036170,GO:0036171,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042304,GO:0042393,GO:0042493,GO:0042594,GO:0042826,GO:0043044,GO:0043156,GO:0043157,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045814,GO:0045827,GO:0045833,GO:0045892,GO:0045893,GO:0045894,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046677,GO:0046688,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051828,GO:0051832,GO:0051834,GO:0052173,GO:0060255,GO:0060258,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071103,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071396,GO:0071470,GO:0071472,GO:0071473,GO:0071496,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090568,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0098609,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1901700,GO:1901701,GO:1901981,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
EggNOG free text desc.Tup N-terminal
EggNOG OGs3XBPQ@554915,KOG0266@1,KOG0266@2759
COG Functional cat.K
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Exons1
Model size612
Cds size612
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.9002466-CDS-M-pyrifera_M_contig106918:11..6231622815578.9002466-CDS-M-pyrifera_M_contig106918:11..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106918 12..623 +
1692277472.4780426-CDS-M-pyrifera_M_contig106918:11..6231692277472.4780426-CDS-M-pyrifera_M_contig106918:11..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106918 12..623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106918.1481.1prot_M-pyrifera_M_contig106918.1481.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106918 12..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106918.1481.1

>prot_M-pyrifera_M_contig106918.1481.1 ID=prot_M-pyrifera_M_contig106918.1481.1|Name=mRNA_M-pyrifera_M_contig106918.1481.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=204bp
LHDTSRADDLYLRSVCFSPCGQYLACGTEDKTVKLWDIAREEITHVFEGH
EMDIYSLDFSSDGRFIVSGSGDKKAKVWDVDKRKCVFTLGNDEVGPKDGV
TSVAISPDGRLVAAGSLDHIVRLWDAHTGYFLERYEGHQDSVYSVAFSPD
GKSLASGSLDKTLKLWDLSESRSRSRCRSTFTGHSDYVLSVAFSPEGNWL
VSGS
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mRNA from alignment at M-pyrifera_M_contig106918:12..623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106918.1481.1 ID=mRNA_M-pyrifera_M_contig106918.1481.1|Name=mRNA_M-pyrifera_M_contig106918.1481.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig106918:12..623+ (Macrocystis pyrifera P11B4 male)
CTGCACGACACGAGCCGGGCGGACGACCTCTACCTGCGGTCGGTGTGCTT
CAGCCCTTGCGGCCAGTACTTGGCGTGCGGTACGGAGGACAAGACGGTGA
AGCTGTGGGACATTGCGCGCGAGGAGATCACGCACGTGTTCGAGGGCCAC
GAGATGGACATCTACTCGCTGGACTTCTCGAGCGACGGCAGGTTCATCGT
GTCTGGCAGCGGCGACAAGAAGGCCAAGGTGTGGGACGTGGACAAGAGGA
AGTGTGTGTTCACGCTGGGCAACGACGAAGTGGGCCCCAAGGACGGCGTC
ACGTCGGTGGCCATCAGCCCCGACGGCCGCCTCGTCGCGGCCGGCAGCCT
CGACCACATCGTGCGTTTGTGGGACGCCCACACGGGCTACTTCCTCGAGC
GCTACGAGGGCCACCAGGACTCTGTCTACTCGGTCGCCTTCAGCCCCGAC
GGCAAGTCGCTTGCCTCGGGCAGCCTCGACAAGACGCTCAAGCTGTGGGA
CCTCTCCGAGTCGCGCTCGCGCTCGCGCTGCCGCTCCACCTTCACGGGCC
ACTCGGACTACGTCCTCTCCGTGGCCTTCTCGCCCGAGGGCAACTGGCTC
GTCTCGGGCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106918:12..623+

>mRNA_M-pyrifera_M_contig106918.1481.1 ID=mRNA_M-pyrifera_M_contig106918.1481.1|Name=mRNA_M-pyrifera_M_contig106918.1481.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig106918:12..623+ (Macrocystis pyrifera P11B4 male)
CTGCACGACACGAGCCGGGCGGACGACCTCTACCTGCGGTCGGTGTGCTT
CAGCCCTTGCGGCCAGTACTTGGCGTGCGGTACGGAGGACAAGACGGTGA
AGCTGTGGGACATTGCGCGCGAGGAGATCACGCACGTGTTCGAGGGCCAC
GAGATGGACATCTACTCGCTGGACTTCTCGAGCGACGGCAGGTTCATCGT
GTCTGGCAGCGGCGACAAGAAGGCCAAGGTGTGGGACGTGGACAAGAGGA
AGTGTGTGTTCACGCTGGGCAACGACGAAGTGGGCCCCAAGGACGGCGTC
ACGTCGGTGGCCATCAGCCCCGACGGCCGCCTCGTCGCGGCCGGCAGCCT
CGACCACATCGTGCGTTTGTGGGACGCCCACACGGGCTACTTCCTCGAGC
GCTACGAGGGCCACCAGGACTCTGTCTACTCGGTCGCCTTCAGCCCCGAC
GGCAAGTCGCTTGCCTCGGGCAGCCTCGACAAGACGCTCAAGCTGTGGGA
CCTCTCCGAGTCGCGCTCGCGCTCGCGCTGCCGCTCCACCTTCACGGGCC
ACTCGGACTACGTCCTCTCCGTGGCCTTCTCGCCCGAGGGCAACTGGCTC
GTCTCGGGCTCCCTGCACGACACGAGCCGGGCGGACGACCTCTACCTGCG
GTCGGTGTGCTTCAGCCCTTGCGGCCAGTACTTGGCGTGCGGTACGGAGG
ACAAGACGGTGAAGCTGTGGGACATTGCGCGCGAGGAGATCACGCACGTG
TTCGAGGGCCACGAGATGGACATCTACTCGCTGGACTTCTCGAGCGACGG
CAGGTTCATCGTGTCTGGCAGCGGCGACAAGAAGGCCAAGGTGTGGGACG
TGGACAAGAGGAAGTGTGTGTTCACGCTGGGCAACGACGAAGTGGGCCCC
AAGGACGGCGTCACGTCGGTGGCCATCAGCCCCGACGGCCGCCTCGTCGC
GGCCGGCAGCCTCGACCACATCGTGCGTTTGTGGGACGCCCACACGGGCT
ACTTCCTCGAGCGCTACGAGGGCCACCAGGACTCTGTCTACTCGGTCGCC
TTCAGCCCCGACGGCAAGTCGCTTGCCTCGGGCAGCCTCGACAAGACGCT
CAAGCTGTGGGACCTCTCCGAGTCGCGCTCGCGCTCGCGCTGCCGCTCCA
CCTTCACGGGCCACTCGGACTACGTCCTCTCCGTGGCCTTCTCGCCCGAG
GGCAACTGGCTCGTCTCGGGCTCC
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