mRNA_M-pyrifera_M_contig106911.1479.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106911.1479.1
Unique NamemRNA_M-pyrifera_M_contig106911.1479.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Match: A0A7S2SRR0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRR0_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.290e-46
Identity = 101/208 (48.56%), Postives = 140/208 (67.31%), Query Frame = 1
Query:    1 NLAKAARQLRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLELLVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERLT-AGREDENT--GPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAALRNLVSERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMVAKNRE 615
            N  K+ +Q+R R+H KE+EA+G+ENE+SRIRVDALNT+AHN QL   L+  V +L +K+ L+EKY+LEIRQRNDEIEKKM+ VDRLNR++E++T A  +DE    GPLEATIKN+ K +     E+  LQR WL  QT LV+V A  E        L +  A+L +K++R   +I     EV+ L+  +  MH D+ +LN ++ +N E
Sbjct:  135 NFGKSMKQIRTRMHEKEIEAAGVENEMSRIRVDALNTQAHNLQLKEMLDKQVADLAEKDKLIEKYQLEIRQRNDEIEKKMYRVDRLNRKYEQMTEAAGDDEGPLLGPLEATIKNIKKDMQTTGEENGSLQREWLVDQTNLVTVAAETEELLEKNSELRARIAILAEKKLRSQKEIVVCEAEVKRLEGNIQGMHQDMAKLNDLLGQNTE 342          
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Match: A0A7S2C2G7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2G7_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.020e-45
Identity = 103/206 (50.00%), Postives = 136/206 (66.02%), Query Frame = 1
Query:    1 NLAKAARQLRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLELLVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERLTAGRED-ENTGPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAALRNLVSERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMVAKNRE 615
            N  KAA  +    H KE+EA+ +ENELSRIRVD LNT AHN QL   +E  + ELKDK+ L+EKY+LEIRQRNDEIEKKM+ VDRLNR++E L  G+ED E+ GPLEATI  + K I      + +LQR WL  QT+LVS  +  E +      L +  ++L +K++RL+ DI S   EV+ L   + +MH D+ RLN ++ KN E
Sbjct:  426 NYMKAAAAMTNAAHDKEIEAAHLENELSRIRVDTLNTDAHNVQLREMMEKQLTELKDKDKLIEKYQLEIRQRNDEIEKKMYRVDRLNRKYELLVDGQEDVEHMGPLEATISALRKEIVTVNEAATKLQREWLADQTQLVSTSSETEEKLEKNTELRARISILTEKKLRLNKDIGSHEAEVKRLDHMIQNMHKDMQRLNELIGKNTE 631          
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Match: A0A6A0A2Q6_HAELA (Flagellar-associated protein 172 n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A2Q6_HAELA)

HSP 1 Score: 164 bits (414), Expect = 1.220e-43
Identity = 93/197 (47.21%), Postives = 131/197 (66.50%), Query Frame = 1
Query:   19 RQLRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLELLVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERLTAGREDENTGPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAALRNLVSERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMVAKN 609
            R LR+R+  +E+     +NEL++++VD LNT AHN +L  +L++L  EL DK   +EKYELEI++RNDEIEKK   +D LNRR ER+    EDE TGPLEATIKN+ + I  +  ES E+QRRW+ AQTELV +   N+A +  +  L +E  VL Q+R RL+       REV+ L  G++ +H +L R+N ++A N
Sbjct:  170 RLLRKRIREEELGVVDAQNELAKLQVDVLNTEAHNARLVETLKMLDEELNDKAGAIEKYELEIKRRNDEIEKKTREIDLLNRRLERMVGNMEDEETGPLEATIKNLQREIDTKALESKEMQRRWIAAQTELVGLQNENQALSVTVTRLRAEHTVLVQRRRRLETTYEGHTREVKSLNTGMARLHVELQRVNGLIASN 366          
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Match: A0A7S1SNT8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SNT8_9CHLO)

HSP 1 Score: 161 bits (408), Expect = 5.170e-43
Identity = 96/197 (48.73%), Postives = 130/197 (65.99%), Query Frame = 1
Query:   25 LRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLELLVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERLTAGREDENTGPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAALRNLVSERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMVAKNRE 615
            LR+ +  +EV    ++NE++++ VD LNT AHN +L  +L+LL  E+KDK   +E+YELEIR+RNDEIEK+   VD LNRR+E++TA  EDENTGPLEATI N+ + I  +  E  ELQR WL  QTELV ++  N   A  +  L SE  VL QK +R+D      ++EV  +   +S MH DL RLN+ +AKN E
Sbjct:  303 LRKAVKEEEVNLVALQNEMAKLEVDCLNTDAHNGKLRETLKLLDDEVKDKLRTIEQYELEIRRRNDEIEKRTKEVDLLNRRYEKMTANMEDENTGPLEATINNLQREITQKGVEGKELQRHWLNFQTELVQLLNDNNKMADTVSRLKSEYNVLSQKCLRVDRQYEQQMKEVRTIDGSMSRMHHDLTRLNSHIAKNSE 499          
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Match: A0A7S2WDI7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WDI7_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.550e-42
Identity = 93/205 (45.37%), Postives = 139/205 (67.80%), Query Frame = 1
Query:    1 NLAKAARQLRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLELLVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERL-TAGREDENTGPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAALRNLVSERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMVAKNR 612
            NL++ + ++ + +H KE+E + +ENE+SR+++D LNT++H EQL + L   + ELK+K+ ++EKY++EIRQR+DEIEKKM+ VDRLNR+FE + T   E EN GPLEATIKN++K       +S EL+R WL+ QTE V VV   E E   +  L S   +LEQK+ RL   I S   E+++L   V  MH D+ +LN  +++++
Sbjct:  324 NLSRESGKVFKVIHGKEMEIALLENEMSRVKIDKLNTQSHTEQLDQELNNQLAELKEKDKMIEKYKMEIRQRHDEIEKKMYVVDRLNRKFENMCTNADEPENLGPLEATIKNLTKETTAITTQSRELERTWLKLQTEYVQVVNEMEQENTTVHELTSSETILEQKKKRLGSRIRSQTAELKDLDTRVRRMHNDMHKLNEAISEHK 528          
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Match: A0A024U237_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U237_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.530e-42
Identity = 90/205 (43.90%), Postives = 142/205 (69.27%), Query Frame = 1
Query:    1 NLAKAARQLRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLELLVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERLTAGREDENTGPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAALRNLVSERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMVAKNRE 615
            NL K  ++++  +H KE+  + ++NE++R+ VD LN +AH  QL  + + +V +LK K+  VE+ ELEIRQRNDEIEKKM  +DRLN+++E+L +   DENTGPLEATIKN+ K   V++ E+ + QR WL+ QT LV + A +E      + L S+ ++LEQK++RL  +  +   EV+EL+ G+++MH D  +LN ++++NR+
Sbjct:  430 NLVKETQKIQTAIHEKEILYANIKNEMARVNVDILNVQAHTAQLKDTHDKIVSDLKAKDLAVEQTELEIRQRNDEIEKKMLRLDRLNKKYEQLVSNMVDENTGPLEATIKNIKKETLVKKKENVDKQREWLQLQTSLVHLTAESEDIGETNQELKSKTSILEQKQLRLVNEFNNFQVEVKELKGGIAAMHIDTVKLNELISRNRD 634          
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Match: H3GBY4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBY4_PHYRM)

HSP 1 Score: 158 bits (399), Expect = 4.290e-41
Identity = 95/204 (46.57%), Postives = 139/204 (68.14%), Query Frame = 1
Query:    1 NLAKAARQLRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLELLVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERLTAGREDENTGPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAALRNLV--SERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMVAK 606
            NL K  ++L  R+H KEVE + ++NE++R+ VDALN + H  QL  +   LV ELK  +  VE+ ELEIRQRNDEIEKKM  +DRLN+++E+L +  ED +TGPLEATIKN+ +   + R E+   Q++WL  QT LV   AA+EA+  + RN    S+ +VLEQK++RL  ++    RE+ +L  G++++H D GRLN ++A+
Sbjct:  439 NLTKETQRLVTRVHEKEVELANLQNEMARVGVDALNVQNHTAQLVEAQRALVEELKRDDQRVERAELEIRQRNDEIEKKMLRLDRLNKKYEQLVSKMEDADTGPLEATIKNLVRETKLGREENTVKQKQWLSTQTALVH--AASEAQELSERNQERKSKTSVLEQKQLRLQHELQEMQRELRDLSNGIATLHADTGRLNELIAR 640          
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Match: A0A7S0S456_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S456_9CHLO)

HSP 1 Score: 154 bits (390), Expect = 1.870e-40
Identity = 87/197 (44.16%), Postives = 129/197 (65.48%), Query Frame = 1
Query:   19 RQLRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLELLVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERLTAGREDENTGPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAALRNLVSERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMVAKN 609
            R LR+R+ T+E+     +NEL++++VD LNT +HN +L  +L+LL  EL DK   +EKYELEI++RNDEIEKK   +D LNR+ ER+  G   E TGPLEATIKN+ + I  +  ES E+QRRW+ AQ ELV++   N   A  +  + +E  VL QK+ RL+  +    +E+++L   +  +H +L R+N ++A N
Sbjct:  119 RDLRKRIRTEELAVVEAQNELAKLQVDILNTESHNARLKETLKLLDEELDDKSKAIEKYELEIKRRNDEIEKKTREIDLLNRKLERMVGGMSIEETGPLEATIKNLQREIDTKGRESGEMQRRWIAAQGELVALQNENATAAETVTRMRAEHTVLVQKKRRLESSLEGHNKEIKQLGTAMGRLHVELTRVNGLIASN 315          
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Match: A0A6G0WWH0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWH0_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.700e-40
Identity = 89/205 (43.41%), Postives = 137/205 (66.83%), Query Frame = 1
Query:    1 NLAKAARQLRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLELLVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERLTAGREDENTGPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAALRNLVSERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMVAKNRE 615
            NL K  + ++  +H KE+  + ++NE++R+ VD LN +AH  QL  + + +V ELK K+  VEK ELEIRQRND   KKM  +DRLN+++E+L +   DENTGPLEATIKN+ K   +++ E+ + QR WL  QT LV++ A +E      + L S+ ++LEQK++RL  +  +   +V+EL+  +++MH D  RLN ++AKNR+
Sbjct:  423 NLVKETQAIQMTIHEKEILYANIKNEMARVNVDILNVQAHTTQLKETHDKIVVELKSKDLQVEKTELEIRQRNDXXXKKMLRLDRLNKKYEQLVSNMVDENTGPLEATIKNIKKETVLKKKENVDKQREWLHIQTSLVNLTAESEDIGEKNQELKSKTSILEQKQLRLVNEFNNFKADVKELKATIATMHIDTTRLNDLIAKNRD 627          
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Match: A0A7S1XYJ4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYJ4_9STRA)

HSP 1 Score: 155 bits (391), Expect = 5.150e-40
Identity = 95/204 (46.57%), Postives = 131/204 (64.22%), Query Frame = 1
Query:    1 NLAKAARQLRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLELLVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERLTAGREDENT-GPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAALRNLVSERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMVAKN 609
            NL K + ++ ++ H  E + + +ENE+SRI +D LNT AH  QL  +L  ++ +LK K+ L+EKY+LEIRQRNDEIEKKM+ VDRLNR++E++  G EDE + GPLEATIKN+ + +      SA+LQR WLR QT+LV+  A  E        L +   +L QKR+RL  DI     E + L   V  MH D+ RLN ++ KN
Sbjct:  422 NLNKKSVEVLDQRHGVEFDIANLENEMSRINIDKLNTEAHAVQLRGTLSKILDDLKAKDRLIEKYQLEIRQRNDEIEKKMYRVDRLNRKYEKMLEGVEDEESMGPLEATIKNLRRELEAVGTSSAQLQREWLRDQTQLVAYAAQTEELRDENAELSARITILSQKRLRLLADITRQDEETQRLDGRVRVMHQDMSRLNDLIGKN 625          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106911.1479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SRR0_9STRA3.290e-4648.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C2G7_9STRA2.020e-4550.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6A0A2Q6_HAELA1.220e-4347.21Flagellar-associated protein 172 n=1 Tax=Haematoco... [more]
A0A7S1SNT8_9CHLO5.170e-4348.73Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S2WDI7_9STRA1.550e-4245.37Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A024U237_9STRA6.530e-4243.90Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
H3GBY4_PHYRM4.290e-4146.57Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S0S456_9CHLO1.870e-4044.16Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A6G0WWH0_9STRA3.700e-4043.41Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1XYJ4_9STRA5.150e-4046.57Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106911contigM-pyrifera_M_contig106911:5..619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue2.2e-39
Seed eggNOG ortholog157072.XP_008870616.1
Preferred nameCCDC40
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0001655,GO:0001822,GO:0001889,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003146,GO:0003341,GO:0003351,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030323,GO:0030324,GO:0031016,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0035469,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048562,GO:0048565,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048732,GO:0048793,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051641,GO:0051674,GO:0055123,GO:0060271,GO:0060287,GO:0060429,GO:0060541,GO:0060562,GO:0060632,GO:0061008,GO:0061371,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0071907,GO:0071910,GO:0072001,GO:0072359,GO:0097014,GO:0097722,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.epithelial cilium movement involved in determination of left/right asymmetry
EggNOG OGs2CJ7Q@1,2QQ91@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.8152752-CDS-M-pyrifera_M_contig106911:4..6191622815578.8152752-CDS-M-pyrifera_M_contig106911:4..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106911 5..619 +
1692277472.4524486-CDS-M-pyrifera_M_contig106911:4..6191692277472.4524486-CDS-M-pyrifera_M_contig106911:4..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106911 5..619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106911.1479.1prot_M-pyrifera_M_contig106911.1479.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106911 5..619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106911.1479.1

>prot_M-pyrifera_M_contig106911.1479.1 ID=prot_M-pyrifera_M_contig106911.1479.1|Name=mRNA_M-pyrifera_M_contig106911.1479.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
NLAKAARQLRERLHTKEVEASGMENELSRIRVDALNTRAHNEQLARSLEL
LVRELKDKEALVEKYELEIRQRNDEIEKKMHTVDRLNRRFERLTAGREDE
NTGPLEATIKNVSKSIAVRRGESAELQRRWLRAQTELVSVVAANEAEAAA
LRNLVSERAVLEQKRVRLDGDIASAVREVEELQRGVSSMHGDLGRLNAMV
AKNRE
back to top

mRNA from alignment at M-pyrifera_M_contig106911:5..619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106911.1479.1 ID=mRNA_M-pyrifera_M_contig106911.1479.1|Name=mRNA_M-pyrifera_M_contig106911.1479.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig106911:5..619+ (Macrocystis pyrifera P11B4 male)
AACCTGGCCAAGGCGGCGCGGCAGCTGCGGGAGCGGCTGCACACCAAGGA GGTGGAGGCTTCTGGGATGGAGAACGAGCTGTCGCGGATCCGGGTGGACG CGCTGAACACGCGGGCGCACAACGAGCAGCTGGCGCGGTCGCTGGAGCTG CTGGTGCGGGAGCTGAAGGACAAGGAGGCGCTGGTGGAGAAGTACGAGCT GGAGATCCGGCAGCGGAACGACGAGATCGAGAAGAAGATGCACACGGTGG ACCGGCTGAACCGCCGGTTCGAGCGGCTGACGGCGGGGCGGGAGGATGAG AACACGGGGCCGCTGGAGGCGACGATCAAGAACGTGAGCAAGAGCATCGC GGTGCGCCGCGGCGAGTCGGCGGAGCTGCAGCGCCGCTGGCTGCGCGCCC AGACGGAGCTGGTGTCGGTGGTGGCGGCCAACGAGGCGGAGGCGGCGGCG CTGCGCAACCTGGTGTCGGAGCGGGCGGTGCTGGAGCAGAAGCGGGTGCG GTTGGACGGCGACATTGCGAGCGCGGTGCGCGAGGTGGAGGAGCTGCAGC GGGGCGTCTCCTCCATGCACGGCGATCTGGGCCGGCTGAACGCGATGGTG GCCAAGAACCGGGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig106911:5..619+

>mRNA_M-pyrifera_M_contig106911.1479.1 ID=mRNA_M-pyrifera_M_contig106911.1479.1|Name=mRNA_M-pyrifera_M_contig106911.1479.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig106911:5..619+ (Macrocystis pyrifera P11B4 male)
AACCTGGCCAAGGCGGCGCGGCAGCTGCGGGAGCGGCTGCACACCAAGGA
GGTGGAGGCTTCTGGGATGGAGAACGAGCTGTCGCGGATCCGGGTGGACG
CGCTGAACACGCGGGCGCACAACGAGCAGCTGGCGCGGTCGCTGGAGCTG
CTGGTGCGGGAGCTGAAGGACAAGGAGGCGCTGGTGGAGAAGTACGAGCT
GGAGATCCGGCAGCGGAACGACGAGATCGAGAAGAAGATGCACACGGTGG
ACCGGCTGAACCGCCGGTTCGAGCGGCTGACGGCGGGGCGGGAGGATGAG
AACACGGGGCCGCTGGAGGCGACGATCAAGAACGTGAGCAAGAGCATCGC
GGTGCGCCGCGGCGAGTCGGCGGAGCTGCAGCGCCGCTGGCTGCGCGCCC
AGACGGAGCTGGTGTCGGTGGTGGCGGCCAACGAGGCGGAGGCGGCGGCG
CTGCGCAACCTGGTGTCGGAGCGGGCGGTGCTGGAGCAGAAGCGGGTGCG
GTTGGACGGCGACATTGCGAGCGCGGTGCGCGAGGTGGAGGAGCTGCAGC
GGGGCGTCTCCTCCATGCACGGCGATCTGGGCCGGCTGAACGCGATGGTG
GCCAAGAACCGGGAGAACCTGGCCAAGGCGGCGCGGCAGCTGCGGGAGCG
GCTGCACACCAAGGAGGTGGAGGCTTCTGGGATGGAGAACGAGCTGTCGC
GGATCCGGGTGGACGCGCTGAACACGCGGGCGCACAACGAGCAGCTGGCG
CGGTCGCTGGAGCTGCTGGTGCGGGAGCTGAAGGACAAGGAGGCGCTGGT
GGAGAAGTACGAGCTGGAGATCCGGCAGCGGAACGACGAGATCGAGAAGA
AGATGCACACGGTGGACCGGCTGAACCGCCGGTTCGAGCGGCTGACGGCG
GGGCGGGAGGATGAGAACACGGGGCCGCTGGAGGCGACGATCAAGAACGT
GAGCAAGAGCATCGCGGTGCGCCGCGGCGAGTCGGCGGAGCTGCAGCGCC
GCTGGCTGCGCGCCCAGACGGAGCTGGTGTCGGTGGTGGCGGCCAACGAG
GCGGAGGCGGCGGCGCTGCGCAACCTGGTGTCGGAGCGGGCGGTGCTGGA
GCAGAAGCGGGTGCGGTTGGACGGCGACATTGCGAGCGCGGTGCGCGAGG
TGGAGGAGCTGCAGCGGGGCGTCTCCTCCATGCACGGCGATCTGGGCCGG
CTGAACGCGATGGTGGCCAAGAACCGGGAG
back to top