mRNA_M-pyrifera_M_contig106902.1475.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106902.1475.1
Unique NamemRNA_M-pyrifera_M_contig106902.1475.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106902.1475.1 vs. uniprot
Match: A0A8J7CFI5_9BACL (Prenylcys_lyase domain-containing protein n=1 Tax=Thermicanus sp. TaxID=2773240 RepID=A0A8J7CFI5_9BACL)

HSP 1 Score: 58.9 bits (141), Expect = 5.420e-8
Identity = 48/141 (34.04%), Postives = 70/141 (49.65%), Query Frame = 1 
Query:    4 HVTITVGSLRIHENFGTGEDATQPQKILTRGSAH--FLSIIVLGTHPSHDGKR-IYRITSAQFLSDEDLDSLFADRGPTIRQSWPEAMPSFSVAQEGDSHSFQIANGLYSTVPMEVYVSSLEIQAMTAKNVALLLQRGLQH 417
            HVT+  G L     FG   +   PQ I+TR      F ++ ++G   + DGK  IY+I S + L +  L  LF D   T+   W +A P     +E     F++  GLY    ME  VS++E +A+ AKNV  LL+R  + 
Sbjct:   44 HVTLVAGHLH-PAYFGLRSNEEIPQLIMTRHKKEIPFAAMGLMGH--TEDGKEGIYKIFSTEKLDEPFLSRLFTDSSDTLEIPW-KAYPVLVPMKEWPP--FRLGEGLYYVNGMESAVSTMETEAIAAKNVVNLLKRDWEE 178
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106902.1475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J7CFI5_9BACL5.420e-834.04Prenylcys_lyase domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106902contigM-pyrifera_M_contig106902:37..456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.6330905-CDS-M-pyrifera_M_contig106902:36..4561622815578.6330905-CDS-M-pyrifera_M_contig106902:36..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106902 37..456 +
1692277472.3737624-CDS-M-pyrifera_M_contig106902:36..4561692277472.3737624-CDS-M-pyrifera_M_contig106902:36..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106902 37..456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106902.1475.1prot_M-pyrifera_M_contig106902.1475.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106902 37..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106902.1475.1

>prot_M-pyrifera_M_contig106902.1475.1 ID=prot_M-pyrifera_M_contig106902.1475.1|Name=mRNA_M-pyrifera_M_contig106902.1475.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
IHVTITVGSLRIHENFGTGEDATQPQKILTRGSAHFLSIIVLGTHPSHDG
KRIYRITSAQFLSDEDLDSLFADRGPTIRQSWPEAMPSFSVAQEGDSHSF
QIANGLYSTVPMEVYVSSLEIQAMTAKNVALLLQRGLQH*
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mRNA from alignment at M-pyrifera_M_contig106902:37..456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106902.1475.1 ID=mRNA_M-pyrifera_M_contig106902.1475.1|Name=mRNA_M-pyrifera_M_contig106902.1475.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig106902:37..456+ (Macrocystis pyrifera P11B4 male)
ATCCATGTGACGATTACCGTGGGCTCTCTGAGGATTCACGAGAATTTTGG
GACTGGAGAAGATGCGACACAGCCACAGAAGATCCTCACCAGAGGATCGG
CTCACTTTTTGTCCATTATTGTGTTGGGAACACACCCATCGCATGATGGG
AAGAGGATTTATCGCATTACAAGTGCACAGTTCCTCTCTGACGAGGATCT
TGACTCTCTCTTCGCTGACAGGGGACCGACCATCCGTCAGTCGTGGCCTG
AGGCAATGCCTTCGTTTTCTGTTGCACAAGAAGGCGATTCCCATTCCTTT
CAGATTGCGAATGGCCTTTATAGCACCGTGCCAATGGAGGTATATGTCTC
CTCGCTCGAAATCCAAGCAATGACAGCAAAGAATGTTGCCCTCCTCCTTC
AACGTGGCCTCCAGCACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106902:37..456+

>mRNA_M-pyrifera_M_contig106902.1475.1 ID=mRNA_M-pyrifera_M_contig106902.1475.1|Name=mRNA_M-pyrifera_M_contig106902.1475.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig106902:37..456+ (Macrocystis pyrifera P11B4 male)
ATCCATGTGACGATTACCGTGGGCTCTCTGAGGATTCACGAGAATTTTGG
GACTGGAGAAGATGCGACACAGCCACAGAAGATCCTCACCAGAGGATCGG
CTCACTTTTTGTCCATTATTGTGTTGGGAACACACCCATCGCATGATGGG
AAGAGGATTTATCGCATTACAAGTGCACAGTTCCTCTCTGACGAGGATCT
TGACTCTCTCTTCGCTGACAGGGGACCGACCATCCGTCAGTCGTGGCCTG
AGGCAATGCCTTCGTTTTCTGTTGCACAAGAAGGCGATTCCCATTCCTTT
CAGATTGCGAATGGCCTTTATAGCACCGTGCCAATGGAGGTATATGTCTC
CTCGCTCGAAATCCAAGCAATGACAGCAAAGAATGTTGCCCTCCTCCTTC
AACGTGGCCTCCAGCACTAAATCCATGTGACGATTACCGTGGGCTCTCTG
AGGATTCACGAGAATTTTGGGACTGGAGAAGATGCGACACAGCCACAGAA
GATCCTCACCAGAGGATCGGCTCACTTTTTGTCCATTATTGTGTTGGGAA
CACACCCATCGCATGATGGGAAGAGGATTTATCGCATTACAAGTGCACAG
TTCCTCTCTGACGAGGATCTTGACTCTCTCTTCGCTGACAGGGGACCGAC
CATCCGTCAGTCGTGGCCTGAGGCAATGCCTTCGTTTTCTGTTGCACAAG
AAGGCGATTCCCATTCCTTTCAGATTGCGAATGGCCTTTATAGCACCGTG
CCAATGGAGGTATATGTCTCCTCGCTCGAAATCCAAGCAATGACAGCAAA
GAATGTTGCCCTCCTCCTTCAACGTGGCCTCCAGCACTAA
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