mRNA_M-pyrifera_M_contig106832.1469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106832.1469.1
Unique NamemRNA_M-pyrifera_M_contig106832.1469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Match: A0A7S3NPS9_9STRA (ER membrane protein complex subunit 3 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPS9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.750e-24
Identity = 62/137 (45.26%), Postives = 88/137 (64.23%), Query Frame = 1
Query:   22 ADPMAMMKGMGSQPVMMVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQRDLDLLWLDPSYVSSFSWYILCMYGARPLLALLMGLQHSEALQEAQQLQQQQAAVAAIGGGNPMAPFNAKQAFATELQHLALAEY 432
            A+PM MM GM SQ + MV  M +  +I+  F GFVLV++PF LT+RF+ M QR +DL  LD SYVSS SWY L ++G R L  +L+G + S+AL EA+  Q     + ++GG +   PF+A  A+  E Q L +A++
Sbjct:  103 ANPMGMMDGMKSQALYMVPNMVMMSVISYFFHGFVLVKIPFPLTNRFKVMLQRGVDLATLDVSYVSSLSWYFLVLFGLRGLFKILLG-EDSDALDEARATQMSMGMMHSVGGAH--GPFDAPAAYKHERQELQMAQH 236          
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Match: A0A813BM54_9DINO (ER membrane protein complex subunit 3 (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BM54_9DINO)

HSP 1 Score: 99.8 bits (247), Expect = 2.670e-23
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   25 DPMAMMKGMGSQPVMMVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQRDLDLLWLDPSYVSSFSWYILCMYGARPLLALLMGLQHSEALQEAQQLQ 324
            +PMA M GM +Q   M +  G+GY     FSGFVLVR+PF LT+RF+ MTQ DL L  LD S+VSS SWY++ +YG R L+ L MG   S+A+ EA+ +Q
Sbjct:   67 NPMASMDGMKTQVAFMATNYGMGYWTQAFFSGFVLVRMPFPLTTRFKQMTQSDLALATLDTSFVSSLSWYMIVLYGIRTLVMLAMGNSSSDAMDEAKMMQ 166          
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Match: A0A812NY21_9DINO (ER membrane protein complex subunit 3 n=2 Tax=Sar TaxID=2698737 RepID=A0A812NY21_9DINO)

HSP 1 Score: 95.5 bits (236), Expect = 9.270e-21
Identity = 57/142 (40.14%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   10 ETAAADPMAMMKGMGSQPVMMVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQRDLD--LLWLDPSYVSSFSWYILCMYGARPLLALLMGLQHSEALQEAQQLQQQQAAVAAIGGGNPMAPFNAKQAFATELQHLALAE 429
            E    DP  MM  M  Q V  +S +G  YL+ +LF+GFVLV++PF+LT+RFR +TQRD+   L  L+P+ V+SFSWY++C+YG + ++ L++G + SE   ++  +  Q      +GGG    P+N   AF  E   L +A+
Sbjct:  149 EAPPMDPSGMMGPMQMQAVYYLSNIGSLYLVQSLFTGFVLVKLPFSLTARFRGVTQRDMAQALELLNPALVTSFSWYMMCLYGCQGIITLVLGGKSSEFADQSAMMMSQMG----MGGGRQQ-PWNPGAAFKAERTQLRIAQ 285          
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Match: A0A835YX73_9STRA (ER membrane protein complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX73_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.210e-20
Identity = 58/141 (41.13%), Postives = 84/141 (59.57%), Query Frame = 1
Query:    4 DPETAAADPMAMMKGMGSQPVMMVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQRDLDLLWLDPSYVSSFSWYILCMYGARPLLALLMGLQHSEALQEAQQLQQQQAAVAAIGGGNPMAPFNAKQAFATELQHLALA 426
            DP  A +DP  MM  + +    +V+ M +G   +   +GFV+V+VPF LTSRF+ M QR +++  LDPSYVSS SWY+L M+G R L+ L +G   S + Q+ Q+  Q Q     +G G P   F+AK+AF  E   L ++
Sbjct:  110 DPTAAISDPSKMMGPLINNAGFVVTNMFMGAFSSYFMAGFVMVKVPFPLTSRFKVMLQRGVEISTLDPSYVSSVSWYMLVMFGMRNLIMLALG--ESGSAQDEQRAMQAQ-----MGMGAPQPMFDAKKAFGEESTILGIS 243          
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Match: A0A7R9TN03_9VIRI (ER membrane protein complex subunit 3 n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TN03_9VIRI)

HSP 1 Score: 86.7 bits (213), Expect = 8.630e-19
Identity = 55/137 (40.15%), Postives = 78/137 (56.93%), Query Frame = 1
Query:   22 ADPMAMMKGMGSQPVMMVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQRDLDLLWLDPSYVSSFSWYILCMYGARPLLALLMGLQHSEALQEAQQLQQQQAAVAAIGGGNPMAPFNAKQAFATELQHLALAEY 432
            +DP  MM  +     M+V  M  G  +N  FSGFV+ ++PF LT RFR M QR +DL  LD +YVSS SWY L ++G R L  LL+G   SEA+ + + +  QQ  +  +G G      +  +A+A ELQ + L  +
Sbjct:    3 SDPTMMMDMLKKNVHMIVPQMLTGAWVNFFFSGFVIAKIPFPLTQRFRTMLQRGIDLQSLDVTYVSSLSWYFLNLFGLRGLNQLLLGASASEAIDDTKLMGMQQQMM--MGAG-----MDTSKAYAAELQQMELMRH 132          
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Match: A0A7S4A988_9STRA (ER membrane protein complex subunit 3 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A988_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.030e-17
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   25 DPMAMMKGMGSQPVMMVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQRDLDLLWLDPSYVSSFSWYILCMYGARPLLALLMG 282
            DPMAMM GM    + MV  M +  +I+  FSGFVLV+VPF +T RF+ M QR +DL  LD SYVSS SWY L M+G R  L +++G
Sbjct:  106 DPMAMMDGMKGNMLYMVPNMLMMTVISFFFSGFVLVKVPFPVTQRFKQMLQRGVDLATLDTSYVSSLSWYFLLMFGLRGFLRVVLG 191          
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Match: A0A059LMQ4_9CHLO (ER membrane protein complex subunit 3 (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LMQ4_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 4.760e-17
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   70 MVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQRDLDLLWLDPSYVSSFSWYILCMYGARPLLALLMGLQHSEALQEAQQLQQQQAAVAAIGGGNPMAP-FNAKQAFATELQHLAL 423
            +V  MG+G L+N  FSGF+L RVP AL+ +FRAM QR +DL  LDPSY +S S+YIL ++G   +  L+      +AL +A  + Q Q     +GGG   AP F+A++AF +E Q L L
Sbjct:  117 LVPQMGMGALVNYFFSGFILGRVPLALSPKFRAMLQRGIDLPALDPSYFTSLSFYILALFGLGGIFRLVFA---EDALNDAAMMAQMQPG---MGGGAAPAPMFDAQKAFESEQQALDL 229          
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Match: A0A2P6V5Z6_9CHLO (ER membrane protein complex subunit 3 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V5Z6_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 5.760e-17
Identity = 56/134 (41.79%), Postives = 84/134 (62.69%), Query Frame = 1
Query:   37 MMKGMGSQPVM-MVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQRDLDLLWLDPSYVSSFSWYILCMYGARPLLALLMGLQHSEALQEAQQLQQQQAAVAAIGGGNPMAPFNAKQAFATELQHLALAEYK 435
            MM+GM  Q +  +V  + LG ++N  FSGF+L RVPFAL+ +FR M QR +DL  LDPSY +S S+ IL ++G R ++ L+      +A+ +AQQ+   Q  +  +   NPM  F+A++AFA E   L L E++
Sbjct:  113 MMQGMMRQQLTGLVPQLALGAMVNFFFSGFILGRVPFALSPKFRMMLQRGIDLPSLDPSYFTSLSYCILLLFGLRGVMMLMF---REKAINDAQQMMAMQQQMNPMA--NPMG-FDAEKAFAAERAALGLVEHR 240          
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Match: A0A8J8P6M2_HALGN (ER membrane protein complex subunit 3 n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8P6M2_HALGN)

HSP 1 Score: 84.3 bits (207), Expect = 8.690e-17
Identity = 56/147 (38.10%), Postives = 83/147 (56.46%), Query Frame = 1
Query:   10 ETAAADPMAMMK-----GMGSQPVMMVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQRDLDLLWLDPSYVSSFSWYILCMYGARPLLALLMGLQHSEALQEAQQLQQQQAAVAAIGGGNPMAPFNAKQAFATELQHLALAEYK 435
            + AAA+PMAMM       M  Q V  +  M L  +I  +FSGF++ +VPF L  +F+A+TQ+ L+LL LDPSYVSS SW  L ++G + +++L++G   SE L E   +     A    GGG      N +  F +E ++  +  YK
Sbjct:  132 KVAAANPMAMMNPDMMGNMMKQNVQQMFNMFLFTVIGNIFSGFIIAQVPFPLGQKFKAITQQGLNLLALDPSYVSSMSWCFLLIFGLQGVMSLILG--DSEGLDEMNNMMMGPQAQMMAGGGMGGEQKNFQALFKSEKENYEILNYK 276          
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Match: A0A7S0YVR0_9CRYP (ER membrane protein complex subunit 3 (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YVR0_9CRYP)

HSP 1 Score: 83.6 bits (205), Expect = 1.500e-16
Identity = 52/144 (36.11%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    4 DPETAAADPMAMMKGMGSQPVMMVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQRDLDLLWLDPSYVSSFSWYILCMYGARPLLALLMGLQHSEALQEAQQLQQQQAAVAAIGGGNPMAPFNAKQAFATELQHLALAEYK 435
            DP    +DP  MM+   S   +M+  M +  +I+  FSGFV+V++PF L+ +F++MTQR ++L  LD ++VSSFSWY+L   G   +++L++G      + +A  +QQQ    A   GG P+   +  + +A E+++L +AE+K
Sbjct:  140 DPIAMMSDPNMMMQQQKSMFTVMLPQMVMMGVISYFFSGFVMVKIPFPLSLKFKSMTQRGIELATLDVTFVSSFSWYVLVSVGISGVMSLILG--RPSTVNDATAMQQQMQMQA---GGQPI---DTPKLYAAEMENLNMAEHK 275          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106832.1469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3NPS9_9STRA1.750e-2445.26ER membrane protein complex subunit 3 n=1 Tax=Aure... [more]
A0A813BM54_9DINO2.670e-2352.00ER membrane protein complex subunit 3 (Fragment) n... [more]
A0A812NY21_9DINO9.270e-2140.14ER membrane protein complex subunit 3 n=2 Tax=Sar ... [more]
A0A835YX73_9STRA5.210e-2041.13ER membrane protein complex subunit 3 n=1 Tax=Trib... [more]
A0A7R9TN03_9VIRI8.630e-1940.15ER membrane protein complex subunit 3 n=1 Tax=Pras... [more]
A0A7S4A988_9STRA1.030e-1753.49ER membrane protein complex subunit 3 n=1 Tax=Pela... [more]
A0A059LMQ4_9CHLO4.760e-1745.38ER membrane protein complex subunit 3 (Fragment) n... [more]
A0A2P6V5Z6_9CHLO5.760e-1741.79ER membrane protein complex subunit 3 n=1 Tax=Micr... [more]
A0A8J8P6M2_HALGN8.690e-1738.10ER membrane protein complex subunit 3 n=2 Tax=Halt... [more]
A0A7S0YVR0_9CRYP1.500e-1636.11ER membrane protein complex subunit 3 (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106832contigM-pyrifera_M_contig106832:106..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.1
Seed ortholog evalue8.7e-13
Seed eggNOG ortholog3075.A0A087SSY5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ER membrane protein complex subunit 3
EggNOG OGs34HY0@3041,37PX1@33090,KOG3188@1,KOG3188@2759
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.371941-UTR-M-pyrifera_M_contig106832:105..1351622815578.371941-UTR-M-pyrifera_M_contig106832:105..135Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106832 106..135 +
1692277472.250489-UTR-M-pyrifera_M_contig106832:105..1351692277472.250489-UTR-M-pyrifera_M_contig106832:105..135Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106832 106..135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.3844147-CDS-M-pyrifera_M_contig106832:135..5401622815578.3844147-CDS-M-pyrifera_M_contig106832:135..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106832 136..540 +
1692277472.2678046-CDS-M-pyrifera_M_contig106832:135..5401692277472.2678046-CDS-M-pyrifera_M_contig106832:135..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106832 136..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106832.1469.1prot_M-pyrifera_M_contig106832.1469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106832 136..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106832.1469.1

>prot_M-pyrifera_M_contig106832.1469.1 ID=prot_M-pyrifera_M_contig106832.1469.1|Name=mRNA_M-pyrifera_M_contig106832.1469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
MAMMKGMGSQPVMMVSTMGLGYLINTLFSGFVLVRVPFALTSRFRAMTQR
DLDLLWLDPSYVSSFSWYILCMYGARPLLALLMGLQHSEALQEAQQLQQQ
QAAVAAIGGGNPMAPFNAKQAFATELQHLALAEYK
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mRNA from alignment at M-pyrifera_M_contig106832:106..540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106832.1469.1 ID=mRNA_M-pyrifera_M_contig106832.1469.1|Name=mRNA_M-pyrifera_M_contig106832.1469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig106832:106..540+ (Macrocystis pyrifera P11B4 male)
AGTGACCCTGAGACAGCGGCGGCGGACCCGATGGCGATGATGAAGGGGAT GGGGAGCCAGCCGGTGATGATGGTGAGCACGATGGGGCTGGGGTACCTGA TCAACACTCTGTTCAGCGGGTTTGTGCTGGTGCGAGTTCCTTTCGCCTTG ACGAGTCGATTCCGCGCCATGACCCAGCGTGACTTGGACTTGCTCTGGCT TGACCCTAGTTACGTGTCTTCTTTCTCGTGGTACATCCTGTGCATGTACG GCGCCCGCCCTCTGCTGGCGCTGCTCATGGGGCTGCAGCACTCTGAGGCG CTCCAGGAGGCGCAACAACTCCAGCAACAACAAGCAGCTGTTGCGGCCAT TGGAGGAGGCAATCCAATGGCGCCCTTCAACGCCAAGCAAGCCTTCGCCA CTGAACTCCAACACCTCGCCCTCGCAGAGTACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106832:106..540+

>mRNA_M-pyrifera_M_contig106832.1469.1 ID=mRNA_M-pyrifera_M_contig106832.1469.1|Name=mRNA_M-pyrifera_M_contig106832.1469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig106832:106..540+ (Macrocystis pyrifera P11B4 male)
ATGGCGATGATGAAGGGGATGGGGAGCCAGCCGGTGATGATGGTGAGCAC
GATGGGGCTGGGGTACCTGATCAACACTCTGTTCAGCGGGTTTGTGCTGG
TGCGAGTTCCTTTCGCCTTGACGAGTCGATTCCGCGCCATGACCCAGCGT
GACTTGGACTTGCTCTGGCTTGACCCTAGTTACGTGTCTTCTTTCTCGTG
GTACATCCTGTGCATGTACGGCGCCCGCCCTCTGCTGGCGCTGCTCATGG
GGCTGCAGCACTCTGAGGCGCTCCAGGAGGCGCAACAACTCCAGCAACAA
CAAGCAGCTGTTGCGGCCATTGGAGGAGGCAATCCAATGGCGCCCTTCAA
CGCCAAGCAAGCCTTCGCCACTGAACTCCAACACCTCGCCCTCGCAGAGT
ACAAGATGGCGATGATGAAGGGGATGGGGAGCCAGCCGGTGATGATGGTG
AGCACGATGGGGCTGGGGTACCTGATCAACACTCTGTTCAGCGGGTTTGT
GCTGGTGCGAGTTCCTTTCGCCTTGACGAGTCGATTCCGCGCCATGACCC
AGCGTGACTTGGACTTGCTCTGGCTTGACCCTAGTTACGTGTCTTCTTTC
TCGTGGTACATCCTGTGCATGTACGGCGCCCGCCCTCTGCTGGCGCTGCT
CATGGGGCTGCAGCACTCTGAGGCGCTCCAGGAGGCGCAACAACTCCAGC
AACAACAAGCAGCTGTTGCGGCCATTGGAGGAGGCAATCCAATGGCGCCC
TTCAACGCCAAGCAAGCCTTCGCCACTGAACTCCAACACCTCGCCCTCGC
AGAGTACAAG
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