mRNA_M-pyrifera_M_contig106796.1457.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106796.1457.1
Unique NamemRNA_M-pyrifera_M_contig106796.1457.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106796.1457.1 vs. uniprot
Match: A0A517QA67_9PLAN (Uncharacterized protein n=5 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QA67_9PLAN)

HSP 1 Score: 346 bits (888), Expect = 4.800e-116
Identity = 178/210 (84.76%), Postives = 194/210 (92.38%), Query Frame = 1
Query:    1 DSSLLFGQNEAPANPPEAK---QQDDKALSEYKPLMKPEEAVNFRKTKLRDFDELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPENATDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELDLRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMGDPSNALR 621
            DS++L GQ  AP+NPP+A    +  +KAL+EYKPLM  +EAV FRKTKLRDFDE+LRGGKI+ +ADKKLIADGARYQLYLMTFKNDPNKPEN TDLKKLRANILRDIQFSGRVSGN+QARELYLEELTK APDLFDNHRLVRFSAVVLLSELDL+DEDRRKKTKRTAYTLAYAPLLKV+ES+TQP EVKIVAANGLGRIGEMG+PSNALR
Sbjct:   35 DSAMLCGQTAAPSNPPQANPDAKAQEKALNEYKPLMTEDEAVKFRKTKLRDFDEVLRGGKINGNADKKLIADGARYQLYLMTFKNDPNKPENPTDLKKLRANILRDIQFSGRVSGNFQARELYLEELTKLAPDLFDNHRLVRFSAVVLLSELDLKDEDRRKKTKRTAYTLAYAPLLKVLESETQPVEVKIVAANGLGRIGEMGEPSNALR 244          
BLAST of mRNA_M-pyrifera_M_contig106796.1457.1 vs. uniprot
Match: A0A6I6AMN2_9PLAN (HEAT repeat domain-containing protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AMN2_9PLAN)

HSP 1 Score: 340 bits (872), Expect = 1.400e-113
Identity = 175/177 (98.87%), Postives = 175/177 (98.87%), Query Frame = 1
Query:   91 PLMKPEEAVNFRKTKLRDFDELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPENATDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELDLRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMGDPSNALR 621
            PLM PEEAVNFRKTKLRDFDELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPEN TDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELDLRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMGDPSNALR
Sbjct:   72 PLMTPEEAVNFRKTKLRDFDELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPENPTDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELDLRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMGDPSNALR 248          
BLAST of mRNA_M-pyrifera_M_contig106796.1457.1 vs. uniprot
Match: A0A2E2C802_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C802_9PLAN)

HSP 1 Score: 290 bits (742), Expect = 3.080e-94
Identity = 151/206 (73.30%), Postives = 169/206 (82.04%), Query Frame = 1
Query:    4 SSLLFGQNEAPANPPEAKQQDDKALSEYKPLMKPEEAVNFRKTKLRDFDELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPENATDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELDLRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMGDPSNALR 621
            SS+L GQ   PA P       D AL+ YK LM PEEA++F+KTK RDFDELLRGGKI+ + DKKLIA+GARY LYLMT K DP KPEN TDL KLRANILRDIQFSGRVSGN+QARELYLEELTK+A DL DNHRLVRFSAVVLLS+LDLRDEDRRKK  R AYT+AY PL+KV+  KTQPTE+KIVAANGL RIG+ G+ +N LR
Sbjct:   21 SSILLGQQ--PAEPNAQNNAADNALNVYKELMTPEEAISFQKTKQRDFDELLRGGKINGAEDKKLIAEGARYYLYLMTLKQDPKKPENETDLNKLRANILRDIQFSGRVSGNFQARELYLEELTKRAEDLLDNHRLVRFSAVVLLSQLDLRDEDRRKKIDRVAYTMAYVPLIKVLNDKTQPTELKIVAANGLARIGQTGNATNQLR 224          
BLAST of mRNA_M-pyrifera_M_contig106796.1457.1 vs. uniprot
Match: A0A518IFQ9_9PLAN (Uncharacterized protein n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IFQ9_9PLAN)

HSP 1 Score: 290 bits (743), Expect = 6.460e-94
Identity = 157/221 (71.04%), Postives = 167/221 (75.57%), Query Frame = 1
Query:    4 SSLLFGQNEAPANPPEAKQ---------------QDDKALSEYKPLMKPEEAVNFRKTKLRDFDELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPENATDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELDLRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMGDPSNALR 621
            SS L  Q  AP N P                     D  L + K LM PEEA  FRKTKLRDF+ELLRGGKISS ADKKLIA+GARY LYLMT K DP KPEN TDLKKLRANILRDIQFSGRVSGNYQARELYLEELTK+A DLFDNHRLVRFSAVVLLS LDLRDEDRRKK  R AY  AYAPLLK+I S  QPTE+KI+AANGL RIGE+GDP+N+ R
Sbjct:   41 SSALLSQQPAPPNQPNPXXXXXXXXXXXAQPKPGMQDPGLDQVKELMTPEEAERFRKTKLRDFEELLRGGKISSDADKKLIAEGARYNLYLMTLKQDPRKPENKTDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKRAEDLFDNHRLVRFSAVVLLSSLDLRDEDRRKKLNRVAYVPAYAPLLKIIASPRQPTELKIIAANGLARIGEIGDPTNSRR 261          
BLAST of mRNA_M-pyrifera_M_contig106796.1457.1 vs. uniprot
Match: A0A517VUR2_9PLAN (Uncharacterized protein n=4 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VUR2_9PLAN)

HSP 1 Score: 290 bits (742), Expect = 7.470e-94
Identity = 155/214 (72.43%), Postives = 174/214 (81.31%), Query Frame = 1
Query:    4 SSLLFGQNEAPANPPEAKQQD--------DKALSEYKPLMKPEEAVNFRKTKLRDFDELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPENATDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELDLRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMGDPSNALR 621
            +S L GQ  AP   P A Q +        D AL + K LM  EEAVNFRKTKLR FD+LLR GKIS +ADKKLIA+GARY+LYLMT K +P+KP   TDLKKLR NILRDIQFSGRVSGN QARELYL ELTK+A DLF+NHRLVRF+AVVLLS+LDL+DEDRRKK KRTAYTLAYAPL+K+I SKTQP E+KI+AANGLGRIG MGDP+NALR
Sbjct:   41 NSSLLGQQPAPPAKPVADQPNANPAAPPKDDALDKIKELMTIEEAVNFRKTKLRKFDDLLRSGKISGNADKKLIAEGARYELYLMTMKQNPHKPAEKTDLKKLRLNILRDIQFSGRVSGNSQARELYLAELTKRAEDLFNNHRLVRFNAVVLLSQLDLKDEDRRKKVKRTAYTLAYAPLVKIISSKTQPVELKIIAANGLGRIGRMGDPTNALR 254          
BLAST of mRNA_M-pyrifera_M_contig106796.1457.1 vs. uniprot
Match: A6C6K5_9PLAN (Uncharacterized protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6C6K5_9PLAN)

HSP 1 Score: 288 bits (736), Expect = 1.960e-93
Identity = 149/206 (72.33%), Postives = 169/206 (82.04%), Query Frame = 1
Query:    4 SSLLFGQNEAPANPPEAKQQDDKALSEYKPLMKPEEAVNFRKTKLRDFDELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPENATDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELDLRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMGDPSNALR 621
            SSLL GQ  A          D  AL+ YK LM P+EAVNFRK KLRDFD+LLRGGKISS+ DKKLIA+GA+Y +YLMTFK DPNKPEN TDL KLRANILRDI FSG++SGNYQARELYLEELTK+A DL +NHRLVRFSA VLLS+LDLRDEDR+KK +R AYTLAY PL+KV+  K+Q TEVKIVAANGL RIG+ G+P+N LR
Sbjct:   21 SSLLLGQQPA----------DPNALNVYKELMSPDEAVNFRKNKLRDFDKLLRGGKISSAEDKKLIAEGAKYHVYLMTFKQDPNKPENETDLNKLRANILRDINFSGKISGNYQARELYLEELTKRAQDLLNNHRLVRFSAAVLLSQLDLRDEDRQKKKERVAYTLAYVPLVKVLNDKSQTTEVKIVAANGLARIGQTGNPTNQLR 216          
BLAST of mRNA_M-pyrifera_M_contig106796.1457.1 vs. uniprot
Match: A0A517VH39_9PLAN (Uncharacterized protein n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VH39_9PLAN)

HSP 1 Score: 283 bits (723), Expect = 2.030e-91
Identity = 148/206 (71.84%), Postives = 167/206 (81.07%), Query Frame = 1
Query:    4 SSLLFGQNEAPANPPEAKQQDDKALSEYKPLMKPEEAVNFRKTKLRDFDELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPENATDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELDLRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMGDPSNALR 621
            SSLL GQ  A  N        + AL  YK LM P+EAVNFRKTKL DFD++LRGGKISS+ DKKLIA+GA+Y +YLMTFK DPNKPEN TDL KLRANILRDI FSG++SGNYQARELYLEELTK+A DL DNHRLVRFSAVVLLS+LDLR+EDR+KKT   AYTLAY PL+KV+  K Q  EVKIVAANGL RIG+ G+P+N LR
Sbjct:   21 SSLLLGQQPADPNA------QNNALYVYKELMTPDEAVNFRKTKLLDFDKVLRGGKISSAEDKKLIAEGAKYHVYLMTFKQDPNKPENETDLNKLRANILRDINFSGKISGNYQARELYLEELTKRAQDLLDNHRLVRFSAVVLLSQLDLREEDRQKKTDAVAYTLAYVPLVKVLNDKNQTIEVKIVAANGLARIGKTGNPTNQLR 220          
BLAST of mRNA_M-pyrifera_M_contig106796.1457.1 vs. uniprot
Match: A0A517RIV5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RIV5_9PLAN)

HSP 1 Score: 279 bits (714), Expect = 1.320e-89
Identity = 154/216 (71.30%), Postives = 169/216 (78.24%), Query Frame = 1
Query:    4 SSLLFGQNEAP--ANPPEAK--------QQDDKALSEYKPLMKPEEAVNFRKTKLRDFDELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPENATDLKKLRANILRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELDLRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMGDPSNALR 621
            SS+L  Q  A   ANP  A         Q  D AL + K LM PEEA  FRKTKL +F+ELLRGGKISS+ADKKLIA+GARY LYLMT K DP  PEN TDLKKLRANI+RDI+FSGRVSGN+QARELYLEELTK+A DLFDNHRLVRFSAVVLLS LDLRDEDRRKK +R A+T AYAPLLKVI S  QPTE+KI AANGL RIGEM + SN+ R
Sbjct:   41 SSVLLSQQPAQPNANPANAXXXXXXXXPQMQDPALEQIKELMTPEEAERFRKTKLINFEELLRGGKISSAADKKLIAEGARYNLYLMTLKQDPRNPENKTDLKKLRANIIRDIRFSGRVSGNFQARELYLEELTKRAEDLFDNHRLVRFSAVVLLSSLDLRDEDRRKKIERVAFTPAYAPLLKVIASPNQPTELKITAANGLARIGEMSEASNSRR 256          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106796.1457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A517QA67_9PLAN4.800e-11684.76Uncharacterized protein n=5 Tax=Gimesia panareensi... [more]
A0A6I6AMN2_9PLAN1.400e-11398.87HEAT repeat domain-containing protein n=8 Tax=Gime... [more]
A0A2E2C802_9PLAN3.080e-9473.30Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A518IFQ9_9PLAN6.460e-9471.04Uncharacterized protein n=2 Tax=Gimesia fumaroli T... [more]
A0A517VUR2_9PLAN7.470e-9472.43Uncharacterized protein n=4 Tax=Gimesia aquarii Ta... [more]
A6C6K5_9PLAN1.960e-9372.33Uncharacterized protein n=8 Tax=Planctomycetaceae ... [more]
A0A517VH39_9PLAN2.030e-9171.84Uncharacterized protein n=2 Tax=Gimesia algae TaxI... [more]
A0A517RIV5_9PLAN1.320e-8971.30Uncharacterized protein n=2 Tax=Gimesia alba TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106796contigM-pyrifera_M_contig106796:3..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score288.9
Seed ortholog evalue1.9e-75
Seed eggNOG ortholog344747.PM8797T_24441
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lyase activity
EggNOG OGs2J3D7@203682,COG1413@1,COG1413@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size621
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.7046347-CDS-M-pyrifera_M_contig106796:2..6231622815577.7046347-CDS-M-pyrifera_M_contig106796:2..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106796 3..623 +
1692277471.9316494-CDS-M-pyrifera_M_contig106796:2..6231692277471.9316494-CDS-M-pyrifera_M_contig106796:2..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106796 3..623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106796.1457.1prot_M-pyrifera_M_contig106796.1457.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106796 3..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106796.1457.1

>prot_M-pyrifera_M_contig106796.1457.1 ID=prot_M-pyrifera_M_contig106796.1457.1|Name=mRNA_M-pyrifera_M_contig106796.1457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=207bp
DSSLLFGQNEAPANPPEAKQQDDKALSEYKPLMKPEEAVNFRKTKLRDFD
ELLRGGKISSSADKKLIADGARYQLYLMTFKNDPNKPENATDLKKLRANI
LRDIQFSGRVSGNYQARELYLEELTKQAPDLFDNHRLVRFSAVVLLSELD
LRDEDRRKKTKRTAYTLAYAPLLKVIESKTQPTEVKIVAANGLGRIGEMG
DPSNALR
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mRNA from alignment at M-pyrifera_M_contig106796:3..623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106796.1457.1 ID=mRNA_M-pyrifera_M_contig106796.1457.1|Name=mRNA_M-pyrifera_M_contig106796.1457.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=621bp|location=Sequence derived from alignment at M-pyrifera_M_contig106796:3..623+ (Macrocystis pyrifera P11B4 male)
GACAGCTCCCTGCTGTTCGGTCAGAACGAGGCTCCAGCCAATCCGCCTGA GGCAAAACAGCAGGACGATAAAGCGCTCTCTGAATACAAACCCCTGATGA AGCCGGAAGAGGCCGTCAATTTTCGCAAGACCAAATTACGCGATTTTGAT GAGCTCCTGCGGGGAGGAAAAATCAGCAGTAGTGCAGACAAGAAGCTGAT TGCAGATGGTGCCCGTTACCAGTTGTACCTGATGACGTTTAAAAACGATC CCAACAAACCCGAAAATGCCACCGACCTGAAAAAGCTGCGTGCCAATATT CTGCGTGACATTCAATTTTCCGGACGCGTCTCTGGTAACTACCAGGCGCG TGAACTGTATCTGGAAGAATTAACCAAACAGGCTCCCGATCTGTTTGACA ATCATCGCCTGGTCCGTTTCAGTGCGGTCGTGCTGCTCTCCGAACTGGAC CTGCGAGATGAAGACCGCCGCAAGAAGACCAAACGGACCGCCTACACCCT GGCATACGCTCCGTTACTGAAAGTAATCGAATCCAAAACACAACCGACTG AAGTCAAAATCGTCGCCGCCAATGGCCTGGGTCGCATCGGTGAGATGGGT GATCCCAGTAATGCTCTGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106796:3..623+

>mRNA_M-pyrifera_M_contig106796.1457.1 ID=mRNA_M-pyrifera_M_contig106796.1457.1|Name=mRNA_M-pyrifera_M_contig106796.1457.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1242bp|location=Sequence derived from alignment at M-pyrifera_M_contig106796:3..623+ (Macrocystis pyrifera P11B4 male)
GACAGCTCCCTGCTGTTCGGTCAGAACGAGGCTCCAGCCAATCCGCCTGA
GGCAAAACAGCAGGACGATAAAGCGCTCTCTGAATACAAACCCCTGATGA
AGCCGGAAGAGGCCGTCAATTTTCGCAAGACCAAATTACGCGATTTTGAT
GAGCTCCTGCGGGGAGGAAAAATCAGCAGTAGTGCAGACAAGAAGCTGAT
TGCAGATGGTGCCCGTTACCAGTTGTACCTGATGACGTTTAAAAACGATC
CCAACAAACCCGAAAATGCCACCGACCTGAAAAAGCTGCGTGCCAATATT
CTGCGTGACATTCAATTTTCCGGACGCGTCTCTGGTAACTACCAGGCGCG
TGAACTGTATCTGGAAGAATTAACCAAACAGGCTCCCGATCTGTTTGACA
ATCATCGCCTGGTCCGTTTCAGTGCGGTCGTGCTGCTCTCCGAACTGGAC
CTGCGAGATGAAGACCGCCGCAAGAAGACCAAACGGACCGCCTACACCCT
GGCATACGCTCCGTTACTGAAAGTAATCGAATCCAAAACACAACCGACTG
AAGTCAAAATCGTCGCCGCCAATGGCCTGGGTCGCATCGGTGAGATGGGT
GATCCCAGTAATGCTCTGCGTGACAGCTCCCTGCTGTTCGGTCAGAACGA
GGCTCCAGCCAATCCGCCTGAGGCAAAACAGCAGGACGATAAAGCGCTCT
CTGAATACAAACCCCTGATGAAGCCGGAAGAGGCCGTCAATTTTCGCAAG
ACCAAATTACGCGATTTTGATGAGCTCCTGCGGGGAGGAAAAATCAGCAG
TAGTGCAGACAAGAAGCTGATTGCAGATGGTGCCCGTTACCAGTTGTACC
TGATGACGTTTAAAAACGATCCCAACAAACCCGAAAATGCCACCGACCTG
AAAAAGCTGCGTGCCAATATTCTGCGTGACATTCAATTTTCCGGACGCGT
CTCTGGTAACTACCAGGCGCGTGAACTGTATCTGGAAGAATTAACCAAAC
AGGCTCCCGATCTGTTTGACAATCATCGCCTGGTCCGTTTCAGTGCGGTC
GTGCTGCTCTCCGAACTGGACCTGCGAGATGAAGACCGCCGCAAGAAGAC
CAAACGGACCGCCTACACCCTGGCATACGCTCCGTTACTGAAAGTAATCG
AATCCAAAACACAACCGACTGAAGTCAAAATCGTCGCCGCCAATGGCCTG
GGTCGCATCGGTGAGATGGGTGATCCCAGTAATGCTCTGCGT
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