mRNA_M-pyrifera_M_contig10679.1456.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10679.1456.1
Unique NamemRNA_M-pyrifera_M_contig10679.1456.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10679.1456.1 vs. uniprot
Match: D8LGC2_ECTSI (Lon protease homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC2_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 5.660e-52
Identity = 130/181 (71.82%), Postives = 147/181 (81.22%), Query Frame = 1 
Query:    1 QQPVFVVRDRVLFPGGLIRLSVGKPKSVRLVESLLTKRDD---QHQHQSNNNAGPTILLAIFTQRHETPVGVAGEAGSDDTTAIRXXXXXXXXXXXXXXXXXXXXXXERGGARVLNSISRVGCAAKVVQMGRVTGSDSFKYSVLVQGVSRIRVLSLAEDGPVLHGTVVRLHDQGSAADAEV 534
            Q PVFVVRDRVLFPGGL+RLSVGKPKSVRLVESLL  R+D   +H +   +  GPTIL+AIFTQR    VG   E GS       XXXXXXXXXXXXXXXXXXXXXXE    R+L+++SRVGCAAKVVQMGRVTGS++FKYSVLVQGVSRIR+LS++E+  +LHGTVVRLHDQGS ADAEV
Sbjct:   10 QLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQR----VGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXXXE---GRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLHDQGSIADAEV 183
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BLAST of mRNA_M-pyrifera_M_contig10679.1456.1 vs. uniprot
Match: A0A6H5K538_9PHAE (Lon N-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K538_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.910e-31
Identity = 86/146 (58.90%), Postives = 101/146 (69.18%), Query Frame = 1 
Query:    1 QQPVFVVRDRVLFPGGLIRLSVGKPKSVRLVESLLTKRDD---QHQHQSNNNAGPTILLAIFTQRHETPVGVAGE--AGSDDTTAIRXXXXXXXXXXXXXXXXXXXXXXERGGARVLNSISRVGCAAKVVQMGRVTGSDSFKYSVL 423
            Q PVFVVRDRVLFPGGL+RLSVGKP+SVRLVESLL  R+D   +H +   +  GPTIL+AIFTQR    VG   E  + SDD    R        XXXXXXXXXXX        R+L+++SRVGCAAKVVQMGRVTG+++FK   L
Sbjct:   10 QLPVFVVRDRVLFPGGLLRLSVGKPQSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQR----VGAVDEERSASDDVAIFRDHQQRPGAXXXXXXXXXXXE------GRILSTMSRVGCAAKVVQMGRVTGNETFKVKAL 145
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BLAST of mRNA_M-pyrifera_M_contig10679.1456.1 vs. uniprot
Match: A0A2R5GJ38_9STRA (Lon protease homolog n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ38_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.010e-9
Identity = 52/182 (28.57%), Postives = 80/182 (43.96%), Query Frame = 1 
Query:    1 QQPVFVVRDRVLFPGGLIRLSVGKPKSVRLVESLLTKRDDQHQHQSNNNAGPTILLAIFTQRHETPVGVAGEAGSDDTTAIRXXXXXXXXXXXXXXXXXXXXXXERGGARVLNSIS--RVGCAAKVVQMGRVTGSDS--FKYSVLVQGVSRIRVLSLAEDGPVLHGTVVRLHDQGSAADAEV 534
            Q P+  +R RVL PG L+RL +G+P SVRLVES+           S  +     LLA+ T + E+       A S    + +                      +  GA      S  + G  A+V+Q+ ++ G DS  F++++LV+G+SR+ V  +    P     +    D GS  D EV
Sbjct:   15 QLPLLTIRRRVLVPGVLLRLQIGRPNSVRLVESIWDS--------STRSFKKGALLAVSTVKTESDA-----ASSSSGASAKKAIGDKNNNKDAGAGAEPLEVVDMPGASEDGPTSCYKAGTVARVLQLSKINGKDSSNFQFTLLVEGLSRMSVEEIVRTEPYTVAKIAWKADIGSVNDTEV 183
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BLAST of mRNA_M-pyrifera_M_contig10679.1456.1 vs. uniprot
Match: A0A4D9CQU2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQU2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.590e-8
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    7 PVFVVRDRVLFPGGLIRLSVGKPKSVRLVESLLT--KRDDQHQHQSNNNAGPTILLAIF 177
            P+ V+R+RVLFPGGL+RLSVGKP+SVRL+E  L   KR  Q QH S+   G  I +A  
Sbjct:   27 PLLVIRNRVLFPGGLLRLSVGKPRSVRLIEDFLVSQKRPLQPQHHSSPLRGGFIAVAAL 85
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10679.1456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGC2_ECTSI5.660e-5271.82Lon protease homolog n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K538_9PHAE4.910e-3158.90Lon N-terminal domain-containing protein (Fragment... [more]
A0A2R5GJ38_9STRA1.010e-928.57Lon protease homolog n=1 Tax=Hondaea fermentalgian... [more]
A0A4D9CQU2_9STRA1.590e-855.93Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10679contigM-pyrifera_M_contig10679:588..3215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue3.9e-45
Seed eggNOG ortholog2880.D8LGC2
Preferred nameLONP2
KEGG koko:K01338,ko:K08675
KEGG Pathwayko04112,map04112
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0002020,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006139,GO:0006259,GO:0006508,GO:0006605,GO:0006625,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007031,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009266,GO:0009408,GO:0009628,GO:0009791,GO:0009894,GO:0009987,GO:0010033,GO:0010467,GO:0010565,GO:0014070,GO:0015031,GO:0015833,GO:0015919,GO:0016043,GO:0016485,GO:0016558,GO:0016560,GO:0016787,GO:0017038,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0019899,GO:0022622,GO:0031323,GO:0031329,GO:0031907,GO:0031974,GO:0031998,GO:0032042,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0040007,GO:0042221,GO:0042579,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043574,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046320,GO:0046483,GO:0046907,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055085,GO:0062012,GO:0065002,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0090304,GO:0090696,GO:0099402,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial
EggNOG OGsCOG0466@1,KOG2004@2759
EC3.4.21.53
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Exons3
Model size534
Cds size534
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10679.1456.1prot_M-pyrifera_M_contig10679.1456.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10679 588..3215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.6399186-CDS-M-pyrifera_M_contig10679:587..7101622815577.6399186-CDS-M-pyrifera_M_contig10679:587..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10679 588..710 -
1692277471.8888495-CDS-M-pyrifera_M_contig10679:587..7101692277471.8888495-CDS-M-pyrifera_M_contig10679:587..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10679 588..710 -
1622815577.6524572-CDS-M-pyrifera_M_contig10679:1725..19391622815577.6524572-CDS-M-pyrifera_M_contig10679:1725..1939Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10679 1726..1939 -
1692277471.9116669-CDS-M-pyrifera_M_contig10679:1725..19391692277471.9116669-CDS-M-pyrifera_M_contig10679:1725..1939Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10679 1726..1939 -
1622815577.6671662-CDS-M-pyrifera_M_contig10679:3018..32151622815577.6671662-CDS-M-pyrifera_M_contig10679:3018..3215Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10679 3019..3215 -
1692277471.9222791-CDS-M-pyrifera_M_contig10679:3018..32151692277471.9222791-CDS-M-pyrifera_M_contig10679:3018..3215Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10679 3019..3215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10679.1456.1

>prot_M-pyrifera_M_contig10679.1456.1 ID=prot_M-pyrifera_M_contig10679.1456.1|Name=mRNA_M-pyrifera_M_contig10679.1456.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
QQPVFVVRDRVLFPGGLIRLSVGKPKSVRLVESLLTKRDDQHQHQSNNNA
GPTILLAIFTQRHETPVGVAGEAGSDDTTAIREQRSGGGDGGGGGGGGGG
GGSDERGGARVLNSISRVGCAAKVVQMGRVTGSDSFKYSVLVQGVSRIRV
LSLAEDGPVLHGTVVRLHDQGSAADAEV
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mRNA from alignment at M-pyrifera_M_contig10679:588..3215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10679.1456.1 ID=mRNA_M-pyrifera_M_contig10679.1456.1|Name=mRNA_M-pyrifera_M_contig10679.1456.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2628bp|location=Sequence derived from alignment at M-pyrifera_M_contig10679:588..3215- (Macrocystis pyrifera P11B4 male)
CAACAGCCGGTATTCGTGGTGCGCGACCGTGTCCTCTTCCCCGGCGGACT
GATCCGCCTCTCCGTAGGAAAGCCCAAGTCGGTGCGGCTGGTGGAGTCTC
TCCTCACCAAGCGAGACGACCAACACCAACACCAGTCCAACAACAATGCC
GGGCCGACGATCCTGCTCGCCATCTTCACCCAAAGGCACGAAACACCGTC
CGTCTAGTACTGTAGTGCGAGGAATATGATACTTACCGTAAGCCACTCTG
CACGGGCTTACGTGCACACGTAGCGCGAGGATTGTTTTTTTCGCTGTACC
GCCGACCACTCTGTCCGGAAATGGAAGGGCCGTTGGGGTATGGATGTGAG
TACCCAATCGATCCTTTAACTTTCCGGGAAAGAGGGTTAGAGTGCGGTGC
TGCTGTGTAGCGTGGCTATCCTTGGGTCGCCGGTGCGATTGAACACACCA
TGCTTCGAACCAGCAGACTATTTCCCTGACCATTATTTAGTGTTACTATA
GAGAAAGGCGGGCGAATGTAACGGTAGCAATAGTAACGCGGCCGTCGCGC
GTGCCGTTGAGAAACGCGACAAAGAACAAGCCGTTCGGCCAGCTCTAGAG
CTCTGAAAAAGCTATGACTAAAGCCTACGAGTACGAGTACTATGGCAGTA
GTACTGCTGTCGAGCGGAGCTGTTGCGGTTTCCATGTGCTGTACGCGTAT
TTGTGTGTGTTTTAGTCGTTTTTTTCATTTTTTGAGATTCCTCTGGTATA
CACATTGTCTTACACATGTACAGCACTATTAAATTTGAGATTTTGAGCGT
CGGTTCCCCGACGCTGTTGGAAGAGCCACTAACCCGTACCAGTACGCGTT
TTGTTTCATGAGAAGCTGATACGCGCGCCCGGCGTAAAATTTCCGTCAGC
TTGCAAGGTTAACTGCAACAGTATTACGGGGGACCATAGTAAACAGGACC
AAATATTGTTAGTAAAAATAGGGAAATATCTAGGTTTTTATGTATACCAT
AGGTCCTATTAACTATGGACCCCCGTAATAGTCACATTTGTTCCGTACGT
TGTGGTCTATGCATCTGACATACGCTTGTTATTAACACTGCTGCAACCAA
AATAACGCGTTGGCGCCGCCGCTAGCCAGCCGCCGTAGAAGAAAATAGCG
TCTACTGACGGCGCACTGGTGTTGCAGCCGCAGCCGACGGTTGGCTAGAC
GAAACCTGTGTGAAGTCCACGCGCTCACTCCCTGCTTGCCCTGTGTCGTA
CGCGCGCCTCCTCGCTTGTTTGTCAGGGTTGGCGTCGCCGGCGAGGCTGG
ATCCGATGACACAACGGCCATCCGGGAGCAGCGATCGGGAGGTGGCGATG
GCGGTGGTGGCGGTGGTGGCGGTGGTGGCGGCGGTAGTGATGAGAGGGGA
GGGGCGCGCGTTTTGAACAGCATAAGCCGCGTCGGGTGCGCCGCGAAGGT
GGTGCAGATGGGGAGGGTCACCGGCAGTGATAGCTTCAAGGTGGGGGATC
AACTGTCTGCCAGTGTCGCGTCGTGTCGCGTGTGTCACGTCGTTCTGTTC
TGTTCAGCGCTTCTGCACAGCGCTGCGGTGCGGTGCGGTGCGCTGGTGTG
GCGCTTGTTGCTTCGTTGTGCAAGCAGCAGTAGCGCGCATGCGACTTGTC
TACGAGCGGGGTGGTGTGTCGATTTTTCCCACGCACGTTCTTGCGGCTTC
GCACTTTTTGCAAGGCGCTGGGTGTTTTTTTTTGCCGTTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGAGGGGTGTACGGCTAG
CCCACCGCCTGCTTTTCGCTGCTGTTATTTTCGTTGTTGACGCGTGACTA
GTGGGCAGTCCACGAAAGCCAGGCGTCTATCGAGTGCCCATTCTTTGGCC
CCGAATACACTTTTGACCACACCTCCCATTTACTTTCTTTGGGTGGCACG
CACCGAGCCTTCTTCCCGTGTCGACCAGTGCCTCTAGATACCGATAGGTA
CACCTTTTTTTGGTAAGGTGGTCGCACCGTACCTAATAGCGGGTCTGCCG
AGTTGGTCTGTGGAAATTTCGGGCCGGGCCATTCTTGTGTTTTTGTTTTG
CTTCCCGAACCAGTGCCTACAGAATAAACAAATATCAGGTACAACTCACG
CTGTATATACCATACTGGTAAAACCCTACCGTTGTTTACAGTGGTTCTGT
TACTACGCTGTATTTGCGCTGCATTTCTCATCGCCTTCTCTCTTCCGTGT
CTACTCTCTATCCTACCCCCCCTCCCCCCCGCCCTCCCTCCCTCCCCGCC
CTCCCTCTCTCACACCGCTCGACCCTCCTCGCGAATCGTTTCGTTACCGT
GACATTCTTGCCCATGTCTCGCGGCGACGTCTGCTACCTACATGTGCTGC
TGCCGCTGCTGCGGCTACTGCTACTGCTACTGCTGCTACTGCTACTGCTG
CCACTGCTACTGTGACTGCTACTGCTACTGCTGTTACTGCTACTGCTCCA
TATAGTACTCGGTCCTCGTACAAGGGGTGTCGCGCATTCGAGTGCTTAGC
CTGGCGGAGGACGGGCCGGTGTTGCACGGCACCGTCGTCCGGCTGCACGA
TCAGGGTTCCGCGGCGGACGCCGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10679:588..3215-

>mRNA_M-pyrifera_M_contig10679.1456.1 ID=mRNA_M-pyrifera_M_contig10679.1456.1|Name=mRNA_M-pyrifera_M_contig10679.1456.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig10679:588..3215- (Macrocystis pyrifera P11B4 male)
CAACAGCCGGTATTCGTGGTGCGCGACCGTGTCCTCTTCCCCGGCGGACT
GATCCGCCTCTCCGTAGGAAAGCCCAAGTCGGTGCGGCTGGTGGAGTCTC
TCCTCACCAAGCGAGACGACCAACACCAACACCAGTCCAACAACAATGCC
GGGCCGACGATCCTGCTCGCCATCTTCACCCAAAGGCACGAAACACCCAA
CAGCCGGTATTCGTGGTGCGCGACCGTGTCCTCTTCCCCGGCGGACTGAT
CCGCCTCTCCGTAGGAAAGCCCAAGTCGGTGCGGCTGGTGGAGTCTCTCC
TCACCAAGCGAGACGACCAACACCAACACCAGTCCAACAACAATGCCGGG
CCGACGATCCTGCTCGCCATCTTCACCCAAAGGCACGAAACACCGGTTGG
CGTCGCCGGCGAGGCTGGATCCGATGACACAACGGCCATCCGGGAGCAGC
GATCGGGAGGTGGCGATGGCGGTGGTGGCGGTGGTGGCGGTGGTGGCGGC
GGTAGTGATGAGAGGGGAGGGGCGCGCGTTTTGAACAGCATAAGCCGCGT
CGGGTGCGCCGCGAAGGTGGTGCAGATGGGGAGGGTCACCGGCAGTGATA
GCTTCAAGGGTTGGCGTCGCCGGCGAGGCTGGATCCGATGACACAACGGC
CATCCGGGAGCAGCGATCGGGAGGTGGCGATGGCGGTGGTGGCGGTGGTG
GCGGTGGTGGCGGCGGTAGTGATGAGAGGGGAGGGGCGCGCGTTTTGAAC
AGCATAAGCCGCGTCGGGTGCGCCGCGAAGGTGGTGCAGATGGGGAGGGT
CACCGGCAGTGATAGCTTCAAGTACTCGGTCCTCGTACAAGGGGTGTCGC
GCATTCGAGTGCTTAGCCTGGCGGAGGACGGGCCGGTGTTGCACGGCACC
GTCGTCCGGCTGCACGATCAGGGTTCCGCGGCGGACGCCGAGGTGTACTC
GGTCCTCGTACAAGGGGTGTCGCGCATTCGAGTGCTTAGCCTGGCGGAGG
ACGGGCCGGTGTTGCACGGCACCGTCGTCCGGCTGCACGATCAGGGTTCC
GCGGCGGACGCCGAGGTG
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