mRNA_M-pyrifera_M_contig106765.1451.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106765.1451.1
Unique NamemRNA_M-pyrifera_M_contig106765.1451.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Match: A0A0X3PP64_SCHSO (Receptor expression-enhancing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PP64_SCHSO)

HSP 1 Score: 100 bits (249), Expect = 6.510e-25
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 ASAETLCLIEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYPAYCSFKAVESERKDDDTRWLTYWVVYAFFTV 243
            A  + L  IEDK  VP+ Y VLA + +V +++  G GA FL N++GFLYPAY S KA+ES  KDDDT+WLTYWVVYAFF++
Sbjct:   20 AFTDVLGKIEDKTKVPKIYQVLAIAAIVALYLMVGYGATFLANLIGFLYPAYYSIKAIESPAKDDDTKWLTYWVVYAFFSL 100          
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Match: A0A7S3KX69_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KX69_EUPCR)

HSP 1 Score: 96.7 bits (239), Expect = 4.470e-24
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   25 IEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYPAYCSFKAVESERKDDDTRWLTYWVVYAFFTV 243
            +E K GVP+ YMV       V+ VF  +GA+ LTN+VGFLYPAY SFKA+ES  KDDDT WLTYWVVYAFF +
Sbjct:   38 LEKKTGVPKFYMVAGILGATVILVFLNIGASLLTNLVGFLYPAYASFKAIESHDKDDDTMWLTYWVVYAFFNM 110          
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Match: A0A5K3FAJ7_MESCO (Receptor expression-enhancing protein n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3FAJ7_MESCO)

HSP 1 Score: 97.1 bits (240), Expect = 1.550e-23
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 ASAETLCLIEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYPAYCSFKAVESERKDDDTRWLTYWVVYAFFTV 243
            A  + L  ++DK GV +EY+V     ++V+++  G GA FL N +GF+YPAYCS KA+ES  KDDDT+WLTYWVVYA F +
Sbjct:   20 AVTDVLNKVQDKTGVNKEYIVYGFCAIIVLYLMIGWGATFLANFIGFVYPAYCSIKAIESMEKDDDTKWLTYWVVYAAFAL 100          
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Match: A0A0R3ULM3_MESCO (Receptor expression-enhancing protein n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3ULM3_MESCO)

HSP 1 Score: 97.1 bits (240), Expect = 6.080e-23
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 ASAETLCLIEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYPAYCSFKAVESERKDDDTRWLTYWVVYAFFTV 243
            A  + L  ++DK GV +EY+V     ++V+++  G GA FL N +GF+YPAYCS KA+ES  KDDDT+WLTYWVVYA F +
Sbjct:   66 AVTDVLNKVQDKTGVNKEYIVYGFCAIIVLYLMIGWGATFLANFIGFVYPAYCSIKAIESMEKDDDTKWLTYWVVYAAFAL 146          
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Match: A0A068YER4_ECHMU (Receptor expression-enhancing protein n=2 Tax=Echinococcus TaxID=6209 RepID=A0A068YER4_ECHMU)

HSP 1 Score: 95.1 bits (235), Expect = 1.140e-22
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 ASAETLCLIEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYPAYCSFKAVESERKDDDTRWLTYWVVYAFFTV 243
            A  + L  I+DK GV +EY+V     ++ +++  G GA FL N +GF+YPAYCS KA+ES  KDDDT+WLTYWVVYA F +
Sbjct:   20 AFTDALGTIQDKTGVKKEYIVYGLIALITLYLMVGWGATFLANFIGFIYPAYCSIKAIESPCKDDDTKWLTYWVVYAAFAL 100          
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Match: UPI0006C97831 (receptor expression-enhancing protein 6 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C97831)

HSP 1 Score: 94.4 bits (233), Expect = 1.440e-22
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   16 LCLIEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYPAYCSFKAVESERKDDDTRWLTYWVVYAFFTV 243
            L L E K G+ R Y+ +A  L + +++  G+G   ++N++GFLYPAYCS KA+E++ KDDDT+WLTYWVV+AFFT+
Sbjct:   26 LALAEKKSGLDRLYIFVASVLFLALYLVIGIGQQLVSNVIGFLYPAYCSMKAIETKEKDDDTKWLTYWVVFAFFTI 101          
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Match: A0A0D2X1Y1_CAPO3 (Receptor accessory protein 5 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X1Y1_CAPO3)

HSP 1 Score: 93.6 bits (231), Expect = 2.750e-22
Identity = 39/73 (53.42%), Postives = 59/73 (80.82%), Query Frame = 1
Query:   25 IEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYPAYCSFKAVESERKDDDTRWLTYWVVYAFFTV 243
            ++D+  VP+ Y+ + G L++++ + AG+GA  + N+VGF+YPAY SFKA+ES  KDDDT+WLTYWVV+AFF++
Sbjct:   25 LQDQTKVPKAYLAIGGFLLILLSLSAGLGAQLVCNIVGFVYPAYASFKAIESTNKDDDTQWLTYWVVFAFFSL 97          
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Match: A0A068WJS7_ECHGR (Receptor expression-enhancing protein n=1 Tax=Echinococcus granulosus TaxID=6210 RepID=A0A068WJS7_ECHGR)

HSP 1 Score: 95.1 bits (235), Expect = 3.560e-22
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 ASAETLCLIEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYPAYCSFKAVESERKDDDTRWLTYWVVYAFFTV 243
            A  + L  I+DK GV +EY+V     ++ +++  G GA FL N +GF+YPAYCS KA+ES  KDDDT+WLTYWVVYA F +
Sbjct:   27 AFTDALGTIQDKTGVKKEYIVYGLIALITLYLMVGWGATFLANFIGFIYPAYCSIKAIESPCKDDDTKWLTYWVVYAAFAL 107          
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Match: A0A7M7TG07_STRPU (Receptor expression-enhancing protein n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7TG07_STRPU)

HSP 1 Score: 94.0 bits (232), Expect = 4.010e-22
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 ASAETLCLIEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYPAYCSFKAVESERKDDDTRWLTYWVVYAFFTV 243
            A  + L ++EDK GV R Y V     +V +++  G  A+FLT+ +GFLYPAYCS KA+ES +KDDDT+WLTYWVVY+ F++
Sbjct:   26 AVTDVLAMLEDKTGVKRTYYVAGAVALVGIWLVVGYAASFLTSFLGFLYPAYCSVKAIESTQKDDDTQWLTYWVVYSAFSL 106          
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Match: A0A6H5I965_9HYME (Receptor expression-enhancing protein n=2 Tax=Trichogramma TaxID=7490 RepID=A0A6H5I965_9HYME)

HSP 1 Score: 92.8 bits (229), Expect = 5.920e-22
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   16 LCLIEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYPAYCSFKAVESERKDDDTRWLTYWVVYAFFTV 243
            L   E K GV R Y+ +A  L + +++  G+G   L+N++GF YPAYCS KA+E+++KDDDT+WLTYWVV+A FT+
Sbjct:   26 LAFAEQKTGVDRLYIFVASVLFLALYLVVGIGQQLLSNVIGFTYPAYCSIKAIETKQKDDDTKWLTYWVVFAIFTI 101          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106765.1451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0X3PP64_SCHSO6.510e-2558.02Receptor expression-enhancing protein n=1 Tax=Schi... [more]
A0A7S3KX69_EUPCR4.470e-2463.01Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A5K3FAJ7_MESCO1.550e-2353.09Receptor expression-enhancing protein n=1 Tax=Meso... [more]
A0A0R3ULM3_MESCO6.080e-2353.09Receptor expression-enhancing protein n=1 Tax=Meso... [more]
A0A068YER4_ECHMU1.140e-2253.09Receptor expression-enhancing protein n=2 Tax=Echi... [more]
UPI0006C978311.440e-2252.63receptor expression-enhancing protein 6 n=1 Tax=Co... [more]
A0A0D2X1Y1_CAPO32.750e-2253.42Receptor accessory protein 5 n=1 Tax=Capsaspora ow... [more]
A0A068WJS7_ECHGR3.560e-2253.09Receptor expression-enhancing protein n=1 Tax=Echi... [more]
A0A7M7TG07_STRPU4.010e-2253.09Receptor expression-enhancing protein n=3 Tax=Echi... [more]
A0A6H5I965_9HYME5.920e-2251.32Receptor expression-enhancing protein n=2 Tax=Tric... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106765contigM-pyrifera_M_contig106765:380..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score97.1
Seed ortholog evalue4.1e-18
Seed eggNOG ortholog6211.A0A068YER4
Preferred nameREEP6
KEGG koko:K17279
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.TB2/DP1, HVA22 family
EggNOG OGs39TRY@33154,3CNNN@33208,3E4U5@33213,COG5052@1,KOG1725@2759
COG Functional cat.U
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.4496346-CDS-M-pyrifera_M_contig106765:379..6221622815577.4496346-CDS-M-pyrifera_M_contig106765:379..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106765 380..622 +
1692277471.7849462-CDS-M-pyrifera_M_contig106765:379..6221692277471.7849462-CDS-M-pyrifera_M_contig106765:379..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106765 380..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106765.1451.1prot_M-pyrifera_M_contig106765.1451.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106765 380..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106765.1451.1

>prot_M-pyrifera_M_contig106765.1451.1 ID=prot_M-pyrifera_M_contig106765.1451.1|Name=mRNA_M-pyrifera_M_contig106765.1451.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
ASAETLCLIEDKVGVPREYMVLAGSLVVVMFVFAGVGANFLTNMVGFLYP
AYCSFKAVESERKDDDTRWLTYWVVYAFFTV
back to top

mRNA from alignment at M-pyrifera_M_contig106765:380..622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106765.1451.1 ID=mRNA_M-pyrifera_M_contig106765.1451.1|Name=mRNA_M-pyrifera_M_contig106765.1451.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig106765:380..622+ (Macrocystis pyrifera P11B4 male)
GCATCCGCAGAGACTCTGTGCCTGATCGAGGACAAGGTTGGCGTGCCCCG CGAGTACATGGTGCTTGCCGGCTCGCTGGTGGTTGTCATGTTCGTCTTTG CTGGCGTCGGCGCCAACTTCCTCACCAACATGGTTGGCTTCCTCTACCCG GCTTACTGCTCCTTCAAGGCTGTGGAGAGCGAGCGCAAGGACGACGACAC CCGCTGGCTCACCTACTGGGTGGTCTACGCCTTCTTCACCGTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig106765:380..622+

>mRNA_M-pyrifera_M_contig106765.1451.1 ID=mRNA_M-pyrifera_M_contig106765.1451.1|Name=mRNA_M-pyrifera_M_contig106765.1451.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig106765:380..622+ (Macrocystis pyrifera P11B4 male)
GCATCCGCAGAGACTCTGTGCCTGATCGAGGACAAGGTTGGCGTGCCCCG
CGAGTACATGGTGCTTGCCGGCTCGCTGGTGGTTGTCATGTTCGTCTTTG
CTGGCGTCGGCGCCAACTTCCTCACCAACATGGTTGGCTTCCTCTACCCG
GCTTACTGCTCCTTCAAGGCTGTGGAGAGCGAGCGCAAGGACGACGACAC
CCGCTGGCTCACCTACTGGGTGGTCTACGCCTTCTTCACCGTCGCATCCG
CAGAGACTCTGTGCCTGATCGAGGACAAGGTTGGCGTGCCCCGCGAGTAC
ATGGTGCTTGCCGGCTCGCTGGTGGTTGTCATGTTCGTCTTTGCTGGCGT
CGGCGCCAACTTCCTCACCAACATGGTTGGCTTCCTCTACCCGGCTTACT
GCTCCTTCAAGGCTGTGGAGAGCGAGCGCAAGGACGACGACACCCGCTGG
CTCACCTACTGGGTGGTCTACGCCTTCTTCACCGTC
back to top