mRNA_M-pyrifera_M_contig106761.1448.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106761.1448.1
Unique NamemRNA_M-pyrifera_M_contig106761.1448.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Match: A0A0L0G727_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G727_9EUKA)

HSP 1 Score: 129 bits (325), Expect = 1.440e-32
Identity = 74/130 (56.92%), Postives = 91/130 (70.00%), Query Frame = 1
Query:    1 VVASMLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVFIPFA-PSLDWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLVGVAISASLLPPAVNTGMMLSYGLFG 387
            VVASML+SP+MGPILAF+ GS+I +  MV  G + E  SLL+CVV GF++  VF      S  WPT E SSRG WQA +  + +A PSG GVALSI     +SLVGVAISASLLPPAVN G++ +Y + G
Sbjct:  288 VVASMLISPIMGPILAFTFGSIILDWKMVRHGFLMECVSLLMCVVTGFIIGLVFCTLGYDSWGWPTNEMSSRGTWQACLVSITIAIPSGAGVALSILGNNTSSLVGVAISASLLPPAVNAGILWAYAIVG 417          
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Match: A0A7S1GAG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAG7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.140e-30
Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 VVASMLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVFIPFAPSLDWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLVGVAISASLLPPAVNTGMMLSYGLFG 387
            +VASML+SPLM PIL F+LG+ + + GMV +G+  E   LL+   +G L+  +F P+A    WPT E  SRGV  +L+ G+  A PSGVGVAL  T GG  +LVGVAI+ASLLPP VN+GM L +  FG
Sbjct:  164 IVASMLLSPLMSPILGFTLGTALKDWGMVWAGIKTEVVGLLITFGIGMLIGIIFAPWAEQFTWPTGEMESRGVTSSLLIGVAFAVPSGVGVALCTTGGGSNALVGVAIAASLLPPVVNSGMCLVFSWFG 292          
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Match: A0A0D2WJT9_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WJT9_CAPO3)

HSP 1 Score: 124 bits (311), Expect = 1.940e-30
Identity = 62/129 (48.06%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 VVASMLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVFIPFAPSLDWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLVGVAISASLLPPAVNTGMMLSYGLFG 387
            +VASMLVSP+MGPILA + GS+I ++ ++ +G+ +E   L +C+ +GF++  ++  + P   WPT+E ++RG W  +  G+ VA  SG GVALS+     +SLVGVAISASLLPPAVN GM+ +Y ++G
Sbjct:  621 IVASMLVSPIMGPILAVTFGSVIRDRHLITTGVRSEVIGLSICLAMGFIMGTIWTNWGPQFSWPTSEMAARGDWTGMYIGICVAIASGFGVALSVLGNNTSSLVGVAISASLLPPAVNAGMLFAYSIWG 749          
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Match: A0A6G0WXB1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXB1_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.200e-29
Identity = 66/129 (51.16%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 VVASMLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVFIPFAPSLDWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLVGVAISASLLPPAVNTGMMLSYGLFG 387
            VVASML+SPLMGPIL  S G  I ++ M L+GL NE  +L++ +++G +L  V  P+A  L WPTAE  SRG   +L++G +VA+ SG GVAL+ ++  I+S+VG AI+A+LLPP VN G+ LSY + G
Sbjct:  150 VVASMLLSPLMGPILGCSFGYAIRDRNMFLTGLSNELTALVITLMLGMILGIVLAPYADDLKWPTAEMRSRGQAVSLIFGAIVAALSGAGVALAESNANISSVVGTAIAAALLPPTVNCGICLSYAIIG 278          
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Match: A0A6H5KJ96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ96_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.700e-29
Identity = 70/129 (54.26%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 VVASMLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVFIPFAPSLDWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLVGVAISASLLPPAVNTGMMLSYGLFG 387
            VVA+MLVSP+MGP+LAF+ G+ I +  +   G + E+FSLL+CV VGFL+  V + F  +  WPT E  +RG    L+ G+++A PSG+ VALSI S  + SLVGVAISASLLPPAVNTG+ L+  L G
Sbjct:  677 VVAAMLVSPIMGPVLAFTFGTNIRDWSLAKKGFLVESFSLLICVGVGFLVGIVGVNFIEADTWPTHEMETRGNPWGLLTGIVIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGLCLAVALIG 805          
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Match: D7G144_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G144_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.140e-29
Identity = 69/129 (53.49%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    1 VVASMLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVFIPFAPSLDWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLVGVAISASLLPPAVNTGMMLSYGLFG 387
            VVA+MLVSP+MGP+LAF+ G+ + +  +   G + E+FSLL+CV VGFL+  V + F  +  WPT E  +RG    L+ G+ +A PSG+ VALSI S  + SLVGVAISASLLPPAVNTG+ L+  L G
Sbjct:  658 VVAAMLVSPIMGPVLAFTFGTNVRDWSLAKKGFLVESFSLLICVGVGFLVGMVGVNFIEADTWPTHEMETRGNAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGLCLAVALIG 786          
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Match: UPI000BA812C9 (uncharacterized protein LOC106469415 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA812C9)

HSP 1 Score: 119 bits (298), Expect = 9.320e-29
Identity = 68/124 (54.84%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    4 VASMLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVFIPFAPSL---DWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLVGVAISASLLPPAVNTGMM 366
            VASML+SPLMGPILA + G++I ++ +   GL NE   L VCVV GFL   +   F+ +    +WPT+E + RG W++L  GLL+A PSG GVALS+  G   SLVGVAISASLLPPAVN G++
Sbjct:  277 VASMLISPLMGPILAGTFGAVIEDRSLRNQGLTNEIIGLSVCVVFGFLFGLICGNFSDTWGQGEWPTSEMAGRGYWRSLWVGLLIALPSGAGVALSVLGGNAGSLVGVAISASLLPPAVNAGIL 400          
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Match: UPI000C773E0B (uncharacterized protein LOC111715259 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C773E0B)

HSP 1 Score: 118 bits (296), Expect = 1.240e-28
Identity = 70/122 (57.38%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    4 VASMLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVFIPFAPSL---DWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLVGVAISASLLPPAVNTG 360
            VASMLVSPLMGPILA   G++I +K + + G+ +E  +LL+C+VVGFLL     P    +   +WPT E  SRG  ++LV GL+VA PSG GVALS+  G   SLVGVAISASLLPPAVN G
Sbjct:  220 VASMLVSPLMGPILAGVFGAVIQDKKLAMKGVKHETQALLICIVVGFLLGLCICPVVQMISLPEWPTPEMISRGAPRSLVVGLMVAIPSGAGVALSVLGGNSDSLVGVAISASLLPPAVNAG 341          
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Match: A0A7S3YPI9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YPI9_9EUKA)

HSP 1 Score: 116 bits (290), Expect = 6.270e-28
Identity = 67/128 (52.34%), Postives = 89/128 (69.53%), Query Frame = 1
Query:    1 VVASMLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVFIPFAPSLDWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLVGVAISASLLPPAVNTGMMLSYGLF 384
            +VASMLVSPLMGPI++ + G++I +  M+  G+ +E  +L +C   G L+A  F  F   L WPT E +SRGV   L+ G+++A PSGVGVALS+ S   ASLVGVAISA+LLPPAVN G+   Y L+
Sbjct:  135 IVASMLVSPLMGPIVSATFGTVILDYKMIRLGVTSELVALALCFGTGVLVAVGFAHFGEELGWPTTEMASRGVPGGLIVGIVIALPSGVGVALSVLSNNSASLVGVAISAALLPPAVNVGLCWYYALY 262          
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Match: A0A6V3KPS4_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3KPS4_9EUKA)

HSP 1 Score: 116 bits (290), Expect = 8.660e-28
Identity = 67/128 (52.34%), Postives = 89/128 (69.53%), Query Frame = 1
Query:    1 VVASMLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVFIPFAPSLDWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLVGVAISASLLPPAVNTGMMLSYGLF 384
            +VASMLVSPLMGPI++ + G++I +  M+  G+ +E  +L +C   G L+A  F  F   L WPT E +SRGV   L+ G+++A PSGVGVALS+ S   ASLVGVAISA+LLPPAVN G+   Y L+
Sbjct:  135 IVASMLVSPLMGPIVSATFGTVILDYKMIRLGVTSELVALALCFGTGVLVAVGFAHFGEELGWPTTEMASRGVPGGLIVGIVIALPSGVGVALSVLSNNSASLVGVAISAALLPPAVNVGLCWYYALY 262          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106761.1448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0G727_9EUKA1.440e-3256.92Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A7S1GAG7_9STRA1.140e-3052.71Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0D2WJT9_CAPO31.940e-3048.06Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A6G0WXB1_9STRA1.200e-2951.16Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6H5KJ96_9PHAE1.700e-2954.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G144_ECTSI3.140e-2953.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000BA812C99.320e-2954.84uncharacterized protein LOC106469415 n=1 Tax=Limul... [more]
UPI000C773E0B1.240e-2857.38uncharacterized protein LOC111715259 n=1 Tax=Euryt... [more]
A0A7S3YPI9_9EUKA6.270e-2852.34Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A6V3KPS4_9EUKA8.660e-2852.34Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106761contigM-pyrifera_M_contig106761:118..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score121.7
Seed ortholog evalue2.4e-25
Seed eggNOG ortholog72019.SARC_03105T0
Hectar predicted targeting categorysignal anchor
GOsGO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0048731,GO:0048856,GO:0048869
EggNOG free text desc.Domain of unknown function (DUF389)
EggNOG OGs2QWS6@2759,39RZA@33154,COG1808@1
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size387
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.3238766-UTR-M-pyrifera_M_contig106761:117..1291622815577.3238766-UTR-M-pyrifera_M_contig106761:117..129Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106761 118..129 +
1692277471.7392912-UTR-M-pyrifera_M_contig106761:117..1291692277471.7392912-UTR-M-pyrifera_M_contig106761:117..129Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106761 118..129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.3347704-CDS-M-pyrifera_M_contig106761:129..5041622815577.3347704-CDS-M-pyrifera_M_contig106761:129..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106761 130..504 +
1692277471.751245-CDS-M-pyrifera_M_contig106761:129..5041692277471.751245-CDS-M-pyrifera_M_contig106761:129..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106761 130..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106761.1448.1prot_M-pyrifera_M_contig106761.1448.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106761 130..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106761.1448.1

>prot_M-pyrifera_M_contig106761.1448.1 ID=prot_M-pyrifera_M_contig106761.1448.1|Name=mRNA_M-pyrifera_M_contig106761.1448.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MLVSPLMGPILAFSLGSLINEKGMVLSGLINEAFSLLVCVVVGFLLAFVF
IPFAPSLDWPTAEQSSRGVWQALVYGLLVASPSGVGVALSITSGGIASLV
GVAISASLLPPAVNTGMMLSYGLFG
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mRNA from alignment at M-pyrifera_M_contig106761:118..504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106761.1448.1 ID=mRNA_M-pyrifera_M_contig106761.1448.1|Name=mRNA_M-pyrifera_M_contig106761.1448.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig106761:118..504+ (Macrocystis pyrifera P11B4 male)
GTCGTCGCCAGCATGCTGGTTTCCCCCCTCATGGGGCCCATTCTGGCGTT CTCCTTGGGTTCTCTCATCAACGAGAAGGGGATGGTGCTGAGCGGCCTCA TCAACGAGGCGTTTTCTCTGCTTGTCTGCGTGGTGGTGGGCTTTCTCTTG GCCTTTGTGTTCATTCCCTTTGCGCCATCGTTGGATTGGCCCACAGCGGA GCAGAGCAGCAGAGGAGTATGGCAGGCTCTTGTCTATGGCCTGCTCGTCG CCTCTCCCTCTGGTGTGGGAGTCGCGCTCTCCATCACCAGTGGAGGCATT GCCAGCTTGGTAGGAGTGGCCATCTCTGCCTCTCTTCTCCCGCCTGCCGT GAACACCGGCATGATGCTCAGCTATGGCCTCTTTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106761:118..504+

>mRNA_M-pyrifera_M_contig106761.1448.1 ID=mRNA_M-pyrifera_M_contig106761.1448.1|Name=mRNA_M-pyrifera_M_contig106761.1448.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig106761:118..504+ (Macrocystis pyrifera P11B4 male)
ATGCTGGTTTCCCCCCTCATGGGGCCCATTCTGGCGTTCTCCTTGGGTTC
TCTCATCAACGAGAAGGGGATGGTGCTGAGCGGCCTCATCAACGAGGCGT
TTTCTCTGCTTGTCTGCGTGGTGGTGGGCTTTCTCTTGGCCTTTGTGTTC
ATTCCCTTTGCGCCATCGTTGGATTGGCCCACAGCGGAGCAGAGCAGCAG
AGGAGTATGGCAGGCTCTTGTCTATGGCCTGCTCGTCGCCTCTCCCTCTG
GTGTGGGAGTCGCGCTCTCCATCACCAGTGGAGGCATTGCCAGCTTGGTA
GGAGTGGCCATCTCTGCCTCTCTTCTCCCGCCTGCCGTGAACACCGGCAT
GATGCTCAGCTATGGCCTCTTTGGCATGCTGGTTTCCCCCCTCATGGGGC
CCATTCTGGCGTTCTCCTTGGGTTCTCTCATCAACGAGAAGGGGATGGTG
CTGAGCGGCCTCATCAACGAGGCGTTTTCTCTGCTTGTCTGCGTGGTGGT
GGGCTTTCTCTTGGCCTTTGTGTTCATTCCCTTTGCGCCATCGTTGGATT
GGCCCACAGCGGAGCAGAGCAGCAGAGGAGTATGGCAGGCTCTTGTCTAT
GGCCTGCTCGTCGCCTCTCCCTCTGGTGTGGGAGTCGCGCTCTCCATCAC
CAGTGGAGGCATTGCCAGCTTGGTAGGAGTGGCCATCTCTGCCTCTCTTC
TCCCGCCTGCCGTGAACACCGGCATGATGCTCAGCTATGGCCTCTTTGGC
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