mRNA_M-pyrifera_M_contig106682.1440.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106682.1440.1
Unique NamemRNA_M-pyrifera_M_contig106682.1440.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Match: A0A5A8C2A7_CAFRO (Proteasome subunit alpha type n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C2A7_CAFRO)

HSP 1 Score: 165 bits (417), Expect = 5.110e-49
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 1
Query:    4 SGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRITSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYAEPMRVES 321
            SGYDRGVSTFSP+GR+ Q+EYA KAIELGSC +G+ T EG+VL VEKRITS+LMEK SVEK+VE+DSHV AA SGL ADARTL++HARVE Q HRF + EP+R+ES
Sbjct:    6 SGYDRGVSTFSPEGRIFQVEYAMKAIELGSCVVGVTTREGIVLGVEKRITSSLMEKDSVEKVVEIDSHVAAASSGLTADARTLIEHARVECQNHRFTFDEPLRIES 111          
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Match: A0A6U4I933_9STRA (Proteasome subunit alpha type (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I933_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.820e-48
Identity = 75/106 (70.75%), Postives = 95/106 (89.62%), Query Frame = 1
Query:    4 SGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRITSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYAEPMRVES 321
            +GYDRGV+TFSP+GRL Q+EYA KA++LGS A+GI+T+EG VL+VEKR+TS L+E  SVEKI+E+DSH+GAA+SGL +DARTL+DHARVEAQ HRF + EPMRVE+
Sbjct:    6 TGYDRGVNTFSPEGRLFQVEYAIKAVQLGSTAVGIKTSEGTVLAVEKRLTSKLLEPSSVEKILEVDSHIGAAVSGLISDARTLIDHARVEAQNHRFTFNEPMRVEA 111          
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Match: D7G614_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G614_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.120e-47
Identity = 80/107 (74.77%), Postives = 95/107 (88.79%), Query Frame = 1
Query:    1 RSGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRITSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYAEPMRVES 321
            RS YDRGV+TFSP+GRL Q+EYA +AI+LGS A+GI+T EGVVL+VEKR+TS L+E  SVEKI+E+DSH+GAA+SGL ADARTLVDHARVEAQ HRF Y EPMRVE+
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGVVLAVEKRLTSPLLEPSSVEKIMEVDSHIGAAMSGLIADARTLVDHARVEAQNHRFTYDEPMRVEA 111          
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Match: A0A7S2FHY0_9STRA (Proteasome subunit alpha type n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHY0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 6.750e-47
Identity = 75/107 (70.09%), Postives = 93/107 (86.92%), Query Frame = 1
Query:    1 RSGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRITSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYAEPMRVES 321
            RS YDRGV+TFSPDGRL Q+EYA KAI+LGS AIG++T EG++++VEKR+TS+LM+  SV+K+ ELD+H+G A+SGL ADARTLVDHAR+EAQ HRF Y EPMR ES
Sbjct:    5 RSEYDRGVNTFSPDGRLFQVEYAIKAIQLGSTAIGVKTNEGIIMAVEKRVTSSLMDASSVKKVFELDNHIGCAMSGLIADARTLVDHARIEAQNHRFTYNEPMRTES 111          
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Match: A0A2G9HVA2_9LAMI (Proteasome subunit alpha type n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HVA2_9LAMI)

HSP 1 Score: 156 bits (394), Expect = 7.540e-47
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    1 RSGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRITSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYAEPMRVES 321
            R+ YDRGV+TFSP+GRL Q+EYA +AI+LGS AIGI+T EGVVL+VEKRITS L+E +SVEKI+E+D H+G A+SGL ADARTLV+HARVE Q HRF Y EPM VES
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLLEPNSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVES 111          
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Match: A0A812UKG5_9DINO (PAE1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UKG5_9DINO)

HSP 1 Score: 159 bits (401), Expect = 1.200e-46
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 RSGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRITSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYAEPMRVES 321
            RSGYDRGV+TF+PDGRL Q+EYA KAIELGS A+GI+TA+G+VL+ EKR TS L+EK S+EK+ E+D+HVG A SGL ADARTLVD  RVEAQ H F+YAEPMR ES
Sbjct:    2 RSGYDRGVNTFNPDGRLFQVEYAIKAIELGSLAVGIQTAQGIVLAAEKRTTSPLLEKSSIEKVYEVDTHVGVAASGLTADARTLVDRVRVEAQNHTFVYAEPMRPES 108          
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Match: A0A1Y1UUH7_9FUNG (Proteasome subunit alpha type n=5 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1UUH7_9FUNG)

HSP 1 Score: 158 bits (400), Expect = 1.390e-46
Identity = 74/107 (69.16%), Postives = 96/107 (89.72%), Query Frame = 1
Query:    1 RSGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRITSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYAEPMRVES 321
            RS YDRGV+TFSP+GRL Q+EYA +AI++GS AIGI+T+EGV+L+VEKRITSTL+E  S+EKI+E+DSHVG A+SGL ADART++DHARV+AQ H F+Y EP+++ES
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKMGSTAIGIQTSEGVILAVEKRITSTLLEPSSIEKILEIDSHVGCAMSGLNADARTMIDHARVQAQNHTFVYDEPIKIES 111          
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Match: A0A4P9Y087_9FUNG (Proteasome subunit alpha type n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y087_9FUNG)

HSP 1 Score: 158 bits (400), Expect = 1.390e-46
Identity = 75/107 (70.09%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    1 RSGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRITSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYAEPMRVES 321
            RS YDRGV+TFSP+GRL Q+EYA +AI+LGS A+GIRT EGV+L+VEKR+TS+L+   S+EKI+ELDSH+G A+SGL AD+RT++DHARVEAQ HRF Y EP+RVES
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIRTPEGVILAVEKRVTSSLLVPESIEKILELDSHIGCAMSGLTADSRTMIDHARVEAQNHRFTYDEPIRVES 111          
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Match: A0A1S4B9N4_TOBAC (Proteasome subunit alpha type n=7 Tax=Magnoliopsida TaxID=3398 RepID=A0A1S4B9N4_TOBAC)

HSP 1 Score: 155 bits (392), Expect = 1.520e-46
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 RSGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRITSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYAEPMRVES 321
            R+ YDRGV+TFSP+GRL Q+EYA +AI+LGS AIGI+T EGVVL+VEKRITS L+E  SVEKI+E+D H+G A+SGL ADARTLV+HARVE Q HRF Y EPM VES
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVES 111          
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Match: A0A7D9MB97_PARCT (Proteasome subunit alpha type (Fragment) n=4 Tax=Alcyonacea TaxID=40677 RepID=A0A7D9MB97_PARCT)

HSP 1 Score: 154 bits (390), Expect = 1.640e-46
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    1 RSGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRITSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYAEPMRVES 321
            RS YDRGV+TFSP+GRL Q+EYA +AI+LGS AIGI+T+EGVVL+VEKRITS LME  S+EKI+E+DSH+G A+SGL AD+RT+VD ARVEAQ H F Y EPM VES
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRITSPLMEASSIEKIIEIDSHIGCAVSGLIADSRTMVDKARVEAQNHWFTYNEPMSVES 111          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106682.1440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8C2A7_CAFRO5.110e-4973.58Proteasome subunit alpha type n=3 Tax=Cafeteria ro... [more]
A0A6U4I933_9STRA1.820e-4870.75Proteasome subunit alpha type (Fragment) n=2 Tax=P... [more]
D7G614_ECTSI1.120e-4774.77Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
A0A7S2FHY0_9STRA6.750e-4770.09Proteasome subunit alpha type n=1 Tax=Dictyocha sp... [more]
A0A2G9HVA2_9LAMI7.540e-4771.96Proteasome subunit alpha type n=1 Tax=Handroanthus... [more]
A0A812UKG5_9DINO1.200e-4671.96PAE1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A1Y1UUH7_9FUNG1.390e-4669.16Proteasome subunit alpha type n=5 Tax=Neocallimast... [more]
A0A4P9Y087_9FUNG1.390e-4670.09Proteasome subunit alpha type n=1 Tax=Piptocephali... [more]
A0A1S4B9N4_TOBAC1.520e-4671.96Proteasome subunit alpha type n=7 Tax=Magnoliopsid... [more]
A0A7D9MB97_PARCT1.640e-4671.96Proteasome subunit alpha type (Fragment) n=4 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106682contigM-pyrifera_M_contig106682:3..415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue3.1e-37
Seed eggNOG ortholog2880.D7G614
Preferred namePSMA5
KEGG koko:K02729,ko:K12388
KEGG TC9.A.63.1.3
KEGG Pathwayko03050,ko04142,ko04722,ko04979,map03050,map04142,map04722,map04979
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0176@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.874079-CDS-M-pyrifera_M_contig106682:2..2391622815576.874079-CDS-M-pyrifera_M_contig106682:2..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106682 3..239 -
1692277471.5289989-CDS-M-pyrifera_M_contig106682:2..2391692277471.5289989-CDS-M-pyrifera_M_contig106682:2..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106682 3..239 -
1622815576.8884413-CDS-M-pyrifera_M_contig106682:331..4151622815576.8884413-CDS-M-pyrifera_M_contig106682:331..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106682 332..415 -
1692277471.5448878-CDS-M-pyrifera_M_contig106682:331..4151692277471.5448878-CDS-M-pyrifera_M_contig106682:331..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106682 332..415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106682.1440.1prot_M-pyrifera_M_contig106682.1440.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106682 3..415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106682.1440.1

>prot_M-pyrifera_M_contig106682.1440.1 ID=prot_M-pyrifera_M_contig106682.1440.1|Name=mRNA_M-pyrifera_M_contig106682.1440.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
RSGYDRGVSTFSPDGRLHQIEYASKAIELGSCAIGIRTAEGVVLSVEKRI
TSTLMEKHSVEKIVELDSHVGAAISGLQADARTLVDHARVEAQGHRFMYA
EPMRVES
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mRNA from alignment at M-pyrifera_M_contig106682:3..415-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106682.1440.1 ID=mRNA_M-pyrifera_M_contig106682.1440.1|Name=mRNA_M-pyrifera_M_contig106682.1440.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=413bp|location=Sequence derived from alignment at M-pyrifera_M_contig106682:3..415- (Macrocystis pyrifera P11B4 male)
AGATCTGGATATGACAGAGGTGTTTCGACGTTCAGCCCCGATGGAAGGTT GCACCAAATTGAGTATGCATCCAAGGCAATTGAGGTATGGCAGAAAAAGG GTTGGAAGAGGGAGGTTGCAAGGGTGGTTGTTTTGGATGGGGCGAAAAAA TGGTGTTTCTGTTCCTTTTCTTGCAGCTTGGATCATGTGCAATTGGAATT CGTACTGCAGAAGGGGTGGTGTTGAGTGTGGAAAAGCGAATCACATCCAC GTTGATGGAAAAACACTCTGTTGAAAAAATTGTAGAGCTAGATTCCCACG TCGGAGCAGCCATCAGTGGGCTGCAAGCAGATGCACGTACGTTGGTTGAT CATGCACGTGTAGAAGCGCAAGGACATCGATTTATGTACGCAGAACCCAT GCGAGTCGAATCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106682:3..415-

>mRNA_M-pyrifera_M_contig106682.1440.1 ID=mRNA_M-pyrifera_M_contig106682.1440.1|Name=mRNA_M-pyrifera_M_contig106682.1440.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig106682:3..415- (Macrocystis pyrifera P11B4 male)
AGATCTGGATATGACAGAGGTGTTTCGACGTTCAGCCCCGATGGAAGGTT
GCACCAAATTGAGTATGCATCCAAGGCAATTGAGAGATCTGGATATGACA
GAGGTGTTTCGACGTTCAGCCCCGATGGAAGGTTGCACCAAATTGAGTAT
GCATCCAAGGCAATTGAGCTTGGATCATGTGCAATTGGAATTCGTACTGC
AGAAGGGGTGGTGTTGAGTGTGGAAAAGCGAATCACATCCACGTTGATGG
AAAAACACTCTGTTGAAAAAATTGTAGAGCTAGATTCCCACGTCGGAGCA
GCCATCAGTGGGCTGCAAGCAGATGCACGTACGTTGGTTGATCATGCACG
TGTAGAAGCGCAAGGACATCGATTTATGTACGCAGAACCCATGCGAGTCG
AATCACTTGGATCATGTGCAATTGGAATTCGTACTGCAGAAGGGGTGGTG
TTGAGTGTGGAAAAGCGAATCACATCCACGTTGATGGAAAAACACTCTGT
TGAAAAAATTGTAGAGCTAGATTCCCACGTCGGAGCAGCCATCAGTGGGC
TGCAAGCAGATGCACGTACGTTGGTTGATCATGCACGTGTAGAAGCGCAA
GGACATCGATTTATGTACGCAGAACCCATGCGAGTCGAATCA
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