mRNA_M-pyrifera_M_contig106641.1435.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106641.1435.1
Unique NamemRNA_M-pyrifera_M_contig106641.1435.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106641.1435.1 vs. uniprot
Match: A0A7S4I2I6_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I2I6_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 6.720e-14
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 1 
Query:   10 LQLTSWEEWAGVDVKEVKQRGAKSILQKYNGSLKEALLALFPENGEEISNGEWREKKRVTKPRGFWDSPENCRAHMDDVKKRLGIEEDRDWKGVTSTQLLELGCRTLLGRHSF-SLANLLREVYPEKEWKSSDVESRLPRNHWD 438
            L++TS  +WA V  K+ KQ   + +L+KY GS++  L    PE         W        P   W   +N RA M+ +K+   I ED  WK +T   + + G R L  R  F S   LL+  YPEK++++ ++ SR+P N+W+
Sbjct:   41 LRITSSSQWAKVSYKDFKQVDGRFLLRKY-GSVRSVLDKYKPEMV-------WDPFTERKYPVNHWKDQQNIRAFMERIKQEYNIREDSGWKEITWGHVTKHGGRAL--REKFRSFPELLQAAYPEKQFETQEIRSRMPYNYWE 174
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BLAST of mRNA_M-pyrifera_M_contig106641.1435.1 vs. uniprot
Match: A0A7S4MJL7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MJL7_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 5.630e-8
Identity = 32/105 (30.48%), Postives = 50/105 (47.62%), Query Frame = 1 
Query:  124 ALFPENGEEISNGEWREKK-RVTKPRGFWDSPENCRAHMDDVKKRLGIEEDRDWKGVTSTQLLELGCRTLLGRHSFSLANLLREVYPEKEWKSSDVESRLPRNHW 435
            A++PE        EW+    R       W    N R   D++ K+  I+   DW  V   Q+   G   +L ++S S  + L+ VYPE +W S ++ +RLP N+W
Sbjct:    2 AIYPEY-------EWKPGTVRTRAANNHWKDVANQRKFFDELSKKFNIQTPGDWGSVQYEQIENEGGYPILKQYS-SFLDTLKAVYPEHDWNSVEIRTRLPNNYW 98
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BLAST of mRNA_M-pyrifera_M_contig106641.1435.1 vs. uniprot
Match: A0A7S4IQD2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IQD2_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 3.760e-7
Identity = 26/85 (30.59%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:  181 RVTKPRGFWDSPENCRAHMDDVKKRLGIEEDRDWKGVTSTQLLELGCRTLLGRHSFSLANLLREVYPEKEWKSSDVESRLPRNHW 435
            ++ K R FW S  N R + D + ++  ++   DW  ++  ++   G +++L ++S SL+  L  VYPE +WKS  + SR+   +W
Sbjct:   47 KIKKSREFWFSITNQRNYFDQIAQKYDVKSPNDWNKLSYRKIAREGGQSILRQYS-SLSAALETVYPEYDWKSIKIRSRVVNKYW 130
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106641.1435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4I2I6_9EUKA6.720e-1433.33Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4MJL7_9EUKA5.630e-830.48Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4IQD2_9EUKA3.760e-730.59Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106641contigM-pyrifera_M_contig106641:136..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.6032407-CDS-M-pyrifera_M_contig106641:135..5761622815576.6032407-CDS-M-pyrifera_M_contig106641:135..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106641 136..576 +
1692277471.4046102-CDS-M-pyrifera_M_contig106641:135..5761692277471.4046102-CDS-M-pyrifera_M_contig106641:135..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106641 136..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106641.1435.1prot_M-pyrifera_M_contig106641.1435.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106641 136..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106641.1435.1

>prot_M-pyrifera_M_contig106641.1435.1 ID=prot_M-pyrifera_M_contig106641.1435.1|Name=mRNA_M-pyrifera_M_contig106641.1435.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
MEELQLTSWEEWAGVDVKEVKQRGAKSILQKYNGSLKEALLALFPENGEE
ISNGEWREKKRVTKPRGFWDSPENCRAHMDDVKKRLGIEEDRDWKGVTST
QLLELGCRTLLGRHSFSLANLLREVYPEKEWKSSDVESRLPRNHWDD
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mRNA from alignment at M-pyrifera_M_contig106641:136..576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106641.1435.1 ID=mRNA_M-pyrifera_M_contig106641.1435.1|Name=mRNA_M-pyrifera_M_contig106641.1435.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig106641:136..576+ (Macrocystis pyrifera P11B4 male)
ATGGAAGAGCTCCAGCTGACGTCCTGGGAAGAATGGGCAGGAGTGGATGT
GAAGGAAGTGAAGCAGAGGGGAGCGAAGAGCATTCTCCAGAAGTACAATG
GCTCTTTGAAGGAGGCGTTGCTCGCCCTCTTCCCTGAGAACGGCGAAGAG
ATCTCCAATGGAGAGTGGCGCGAGAAGAAGAGAGTGACGAAGCCCAGAGG
TTTCTGGGATAGCCCTGAGAACTGCAGAGCTCACATGGACGACGTGAAGA
AGCGACTGGGCATTGAAGAGGACAGAGATTGGAAGGGCGTCACCTCGACG
CAGCTGCTCGAGCTCGGCTGCAGGACCCTCCTGGGGAGGCACTCCTTCTC
CCTGGCGAACCTCCTGCGCGAGGTTTACCCTGAGAAGGAGTGGAAGAGTA
GTGACGTGGAGTCACGGCTGCCGAGGAACCACTGGGACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106641:136..576+

>mRNA_M-pyrifera_M_contig106641.1435.1 ID=mRNA_M-pyrifera_M_contig106641.1435.1|Name=mRNA_M-pyrifera_M_contig106641.1435.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig106641:136..576+ (Macrocystis pyrifera P11B4 male)
ATGGAAGAGCTCCAGCTGACGTCCTGGGAAGAATGGGCAGGAGTGGATGT
GAAGGAAGTGAAGCAGAGGGGAGCGAAGAGCATTCTCCAGAAGTACAATG
GCTCTTTGAAGGAGGCGTTGCTCGCCCTCTTCCCTGAGAACGGCGAAGAG
ATCTCCAATGGAGAGTGGCGCGAGAAGAAGAGAGTGACGAAGCCCAGAGG
TTTCTGGGATAGCCCTGAGAACTGCAGAGCTCACATGGACGACGTGAAGA
AGCGACTGGGCATTGAAGAGGACAGAGATTGGAAGGGCGTCACCTCGACG
CAGCTGCTCGAGCTCGGCTGCAGGACCCTCCTGGGGAGGCACTCCTTCTC
CCTGGCGAACCTCCTGCGCGAGGTTTACCCTGAGAAGGAGTGGAAGAGTA
GTGACGTGGAGTCACGGCTGCCGAGGAACCACTGGGACGACATGGAAGAG
CTCCAGCTGACGTCCTGGGAAGAATGGGCAGGAGTGGATGTGAAGGAAGT
GAAGCAGAGGGGAGCGAAGAGCATTCTCCAGAAGTACAATGGCTCTTTGA
AGGAGGCGTTGCTCGCCCTCTTCCCTGAGAACGGCGAAGAGATCTCCAAT
GGAGAGTGGCGCGAGAAGAAGAGAGTGACGAAGCCCAGAGGTTTCTGGGA
TAGCCCTGAGAACTGCAGAGCTCACATGGACGACGTGAAGAAGCGACTGG
GCATTGAAGAGGACAGAGATTGGAAGGGCGTCACCTCGACGCAGCTGCTC
GAGCTCGGCTGCAGGACCCTCCTGGGGAGGCACTCCTTCTCCCTGGCGAA
CCTCCTGCGCGAGGTTTACCCTGAGAAGGAGTGGAAGAGTAGTGACGTGG
AGTCACGGCTGCCGAGGAACCACTGGGACGAC
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