mRNA_M-pyrifera_M_contig106563.1423.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig106563.1423.1
Unique Name	mRNA_M-pyrifera_M_contig106563.1423.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Match: A0A2E7KLB4_9PLAN (Cytochrome c domain-containing protein n=14 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLB4_9PLAN)

HSP 1 Score: 217 bits (553), Expect = 3.220e-63
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1

Query:    1 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 327
            ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS
Sbjct:  196 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 304

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BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Match: A0A517VCY0_9PLAN (Chromosome partition protein Smc n=14 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VCY0_9PLAN)

HSP 1 Score: 215 bits (548), Expect = 1.610e-62
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 1

Query:    1 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 327
            ATNPWSPLAAVAGQKQ+LLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELD VLCADISSDQRFIALGSPSKVIRVYS
Sbjct:  192 ATNPWSPLAAVAGQKQILLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDTVLCADISSDQRFIALGSPSKVIRVYS 300

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BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Match: A0A518I7N5_9PLAN (Chromosome partition protein Smc n=4 Tax=Gimesia TaxID=1649453 RepID=A0A518I7N5_9PLAN)

HSP 1 Score: 215 bits (547), Expect = 2.340e-62
Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 1

Query:    1 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 327
            ATNPWSPLAAVAGQKQVLLYNTKTL+LLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELD+VLCADISSDQRFIALGSPSKVIRVYS
Sbjct:  195 ATNPWSPLAAVAGQKQVLLYNTKTLQLLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDSVLCADISSDQRFIALGSPSKVIRVYS 303

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BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Match: A0A517W257_9PLAN (Chromosome partition protein Smc n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W257_9PLAN)

HSP 1 Score: 204 bits (518), Expect = 3.380e-58
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1

Query:    1 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 327
            ATNPWSPLAAVAGQKQ+LLYNTKTLELLGVLPFPEG P VLKFSRNGSLLLAGGG A ASGRVVVWDVKTGKRLF VGDELD+VLCADISSDQRFIALGSPSKVIRVYS
Sbjct:  191 ATNPWSPLAAVAGQKQILLYNTKTLELLGVLPFPEGFPQVLKFSRNGSLLLAGGGRAGASGRVVVWDVKTGKRLFTVGDELDSVLCADISSDQRFIALGSPSKVIRVYS 299

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BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Match: A0A2E1KFV0_9PLAN (PSCyt1 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E1KFV0_9PLAN)

HSP 1 Score: 178 bits (452), Expect = 1.300e-48
Identity = 84/109 (77.06%), Postives = 95/109 (87.16%), Query Frame = 1

Query:    1 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 327
            AT+PWSPLAAVAGQKQ+ LYNTK L LLGVLPFPEG+PHVLKFSRNG LLLAGGG   ASG+VVVWD+ TG+R+ EVGDELDAVL ADISSDQ  IALG P +++R+YS
Sbjct:  178 ATSPWSPLAAVAGQKQIFLYNTKELRLLGVLPFPEGIPHVLKFSRNGRLLLAGGGRGGASGKVVVWDITTGERVIEVGDELDAVLAADISSDQTLIALGGPQRIVRIYS 286

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BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Match: A0A836RIA0_9PLAN (PSCyt1 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RIA0_9PLAN)

HSP 1 Score: 174 bits (440), Expect = 2.170e-48
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 1

Query:    1 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 327
            AT+PW+PL AVAG KQ+LLY+T TL+ LGVLPFPEG PHVL+FSRNGSLLLAGGG   ASGR VVWDV TGKRLF VGDELDAVL ADIS+DQ  IALGSP +V+RVYS
Sbjct:  191 ATSPWAPLVAVAGHKQILLYHTGTLKRLGVLPFPEGTPHVLRFSRNGSLLLAGGGRGGASGRTVVWDVTTGKRLFAVGDELDAVLAADISADQALIALGSPLRVVRVYS 299

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BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Match: UPI001982E5D4 (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001982E5D4)

HSP 1 Score: 164 bits (416), Expect = 2.770e-46
Identity = 80/109 (73.39%), Postives = 94/109 (86.24%), Query Frame = 1

Query:    1 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 327
            A NPWSPLAAV GQKQVLLYNT TLEL+GVLP+PEG+P VLKFSR+GSLL+  GGHA+A G+VV+++VKTG+R+ EVGDELD VL ADIS DQ  IALG  +K+IRVYS
Sbjct:  186 AVNPWSPLAAVPGQKQVLLYNTATLELVGVLPYPEGIPQVLKFSRSGSLLMVAGGHASAQGKVVIFNVKTGERVAEVGDELDTVLAADISPDQSLIALGGSAKMIRVYS 294

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BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Match: A0A2E7L239_9PLAN (PSCyt1 domain-containing protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7L239_9PLAN)

HSP 1 Score: 172 bits (436), Expect = 3.080e-46
Identity = 80/109 (73.39%), Postives = 95/109 (87.16%), Query Frame = 1

Query:    1 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 327
            AT+PWSPLAAVAGQKQ+ LY+TK L+L+GVLPFPEG+P VLKFSRNG LLLAGGG   A+G+VVVWD+ TG+R+ EVGDELDAVL ADISSDQ  IALG P +++R+YS
Sbjct:  230 ATSPWSPLAAVAGQKQIFLYDTKELQLVGVLPFPEGIPEVLKFSRNGQLLLAGGGRGGATGKVVVWDITTGERVIEVGDELDAVLAADISSDQTLIALGGPQRIVRIYS 338

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BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Match: A0A3M1V3N5_9BACT (PSCyt1 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1V3N5_9BACT)

HSP 1 Score: 172 bits (435), Expect = 6.210e-46
Identity = 82/109 (75.23%), Postives = 99/109 (90.83%), Query Frame = 1

Query:    1 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 327
            A++PW+PL AVAGQ+QVLLY+ +TL+LLGVLPFPEGVP+VL+FSRNG+LLLAGGG  A +GR VVWDV+TG+R+ EVGDELDAVL ADISSD R IALGSP++V+RVYS
Sbjct:  199 ASSPWAPLFAVAGQRQVLLYHAETLQLLGVLPFPEGVPYVLRFSRNGALLLAGGGRGAYAGRCVVWDVRTGERIMEVGDELDAVLAADISSDHRMIALGSPNRVVRVYS 307

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BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Match: UPI0019CA2125 (Uncharacterized protein n=1 Tax=Fuerstiella sp. TaxID=1936112 RepID=UPI0019CA2125)

HSP 1 Score: 171 bits (433), Expect = 1.140e-45
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 1

Query:    1 ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLLLAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGSPSKVIRVYS 327
            ATNPWS LAAVAGQKQV+LY+T+TLE LGVLPFPEGVP VLKFSRNG+LLLAGGGH AA G  VVWDV+TG+R+  VGDELD VL ADIS+DQ  IALG P K++RVY+
Sbjct:  179 ATNPWSKLAAVAGQKQVVLYHTETLEPLGVLPFPEGVPRVLKFSRNGALLLAGGGHGAAKGLCVVWDVRTGERIMSVGDELDEVLAADISADQSMIALGGPEKIVRVYN 287

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig106563.1423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2E7KLB4_9PLAN	3.220e-63	100.00	Cytochrome c domain-containing protein n=14 Tax=Gi...	[more]
A0A517VCY0_9PLAN	1.610e-62	98.17	Chromosome partition protein Smc n=14 Tax=Planctom...	[more]
A0A518I7N5_9PLAN	2.340e-62	98.17	Chromosome partition protein Smc n=4 Tax=Gimesia T...	[more]
A0A517W257_9PLAN	3.380e-58	93.58	Chromosome partition protein Smc n=2 Tax=Gimesia a...	[more]
A0A2E1KFV0_9PLAN	1.300e-48	77.06	PSCyt1 domain-containing protein n=1 Tax=Planctomy...	[more]
A0A836RIA0_9PLAN	2.170e-48	77.98	PSCyt1 domain-containing protein n=1 Tax=Planctomy...	[more]
UPI001982E5D4	2.770e-46	73.39	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]
A0A2E7L239_9PLAN	3.080e-46	73.39	PSCyt1 domain-containing protein n=2 Tax=Planctomy...	[more]
A0A3M1V3N5_9BACT	6.210e-46	75.23	PSCyt1 domain-containing protein n=1 Tax=Planctomy...	[more]
UPI0019CA2125	1.140e-45	76.15	Uncharacterized protein n=1 Tax=Fuerstiella sp. Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig106563	contig	M-pyrifera_M_contig106563:2..625 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	216.5
Seed ortholog evalue	1.2e-53
Seed eggNOG ortholog	344747.PM8797T_03965
Hectar predicted targeting category	other localisation
EggNOG free text desc.	WD-40 repeat
EggNOG OGs	2IXJX@203682,COG2319@1,COG2319@2
COG Functional cat.	C
Best tax level	Planctomycetes
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	624
Cds size	624
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815575.847779-CDS-M-pyrifera_M_contig106563:1..625	1622815575.847779-CDS-M-pyrifera_M_contig106563:1..625	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig106563 2..625 +
1692277470.9547458-CDS-M-pyrifera_M_contig106563:1..625	1692277470.9547458-CDS-M-pyrifera_M_contig106563:1..625	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig106563 2..625 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig106563.1423.1	prot_M-pyrifera_M_contig106563.1423.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig106563 2..625 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig106563:2..625+
coding sequence from alignment at M-pyrifera_M_contig106563:2..625+

protein sequence of mRNA_M-pyrifera_M_contig106563.1423.1

>prot_M-pyrifera_M_contig106563.1423.1 ID=prot_M-pyrifera_M_contig106563.1423.1|Name=mRNA_M-pyrifera_M_contig106563.1423.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=208bp
ATNPWSPLAAVAGQKQVLLYNTKTLELLGVLPFPEGVPHVLKFSRNGSLL
LAGGGHAAASGRVVVWDVKTGKRLFEVGDELDAVLCADISSDQRFIALGS
PSKVIRVYSTSTGELAYEIRKHTDWMTSLAFSPDSVLLCSGDRNGGAFVW
EAATGNEYLTLKGHKGGITGITWRSDSNLVATSSEDQSVKLWEVQNGNNI
KSWNAHGG

mRNA from alignment at M-pyrifera_M_contig106563:2..625+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig106563.1423.1 ID=mRNA_M-pyrifera_M_contig106563.1423.1|Name=mRNA_M-pyrifera_M_contig106563.1423.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig106563:2..625+ (Macrocystis pyrifera P11B4 male)
GCCACCAACCCCTGGTCCCCCCTGGCCGCTGTTGCCGGTCAGAAACAGGT
TCTGCTCTATAACACCAAAACCCTGGAACTTCTGGGGGTACTCCCCTTCC
CCGAAGGCGTACCTCATGTCCTGAAATTCAGCCGGAACGGCAGTCTCTTA
CTGGCCGGCGGCGGACATGCTGCTGCCAGTGGCCGCGTTGTGGTCTGGGA
TGTCAAAACCGGAAAGCGTCTCTTTGAAGTAGGCGACGAACTGGACGCTG
TGCTCTGTGCTGACATCAGCTCCGATCAGCGTTTTATCGCCCTGGGCAGC
CCCAGCAAAGTCATTCGCGTTTATTCCACCAGCACAGGTGAACTCGCTTA
CGAAATCCGTAAACACACCGACTGGATGACCTCGCTGGCCTTCAGCCCCG
ATTCCGTCCTGCTCTGTTCCGGAGACCGGAACGGTGGCGCGTTCGTCTGG
GAAGCAGCTACGGGAAATGAATATCTGACACTCAAGGGACATAAAGGTGG
AATCACCGGGATCACCTGGCGATCCGACTCCAACCTGGTCGCCACCAGTA
GTGAAGATCAGTCCGTCAAACTCTGGGAAGTTCAAAACGGGAATAACATT
AAATCCTGGAACGCCCATGGTGGC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig106563:2..625+

>mRNA_M-pyrifera_M_contig106563.1423.1 ID=mRNA_M-pyrifera_M_contig106563.1423.1|Name=mRNA_M-pyrifera_M_contig106563.1423.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1248bp|location=Sequence derived from alignment at M-pyrifera_M_contig106563:2..625+ (Macrocystis pyrifera P11B4 male)
GCCACCAACCCCTGGTCCCCCCTGGCCGCTGTTGCCGGTCAGAAACAGGT
TCTGCTCTATAACACCAAAACCCTGGAACTTCTGGGGGTACTCCCCTTCC
CCGAAGGCGTACCTCATGTCCTGAAATTCAGCCGGAACGGCAGTCTCTTA
CTGGCCGGCGGCGGACATGCTGCTGCCAGTGGCCGCGTTGTGGTCTGGGA
TGTCAAAACCGGAAAGCGTCTCTTTGAAGTAGGCGACGAACTGGACGCTG
TGCTCTGTGCTGACATCAGCTCCGATCAGCGTTTTATCGCCCTGGGCAGC
CCCAGCAAAGTCATTCGCGTTTATTCCACCAGCACAGGTGAACTCGCTTA
CGAAATCCGTAAACACACCGACTGGATGACCTCGCTGGCCTTCAGCCCCG
ATTCCGTCCTGCTCTGTTCCGGAGACCGGAACGGTGGCGCGTTCGTCTGG
GAAGCAGCTACGGGAAATGAATATCTGACACTCAAGGGACATAAAGGTGG
AATCACCGGGATCACCTGGCGATCCGACTCCAACCTGGTCGCCACCAGTA
GTGAAGATCAGTCCGTCAAACTCTGGGAAGTTCAAAACGGGAATAACATT
AAATCCTGGAACGCCCATGGTGGCGCCACCAACCCCTGGTCCCCCCTGGC
CGCTGTTGCCGGTCAGAAACAGGTTCTGCTCTATAACACCAAAACCCTGG
AACTTCTGGGGGTACTCCCCTTCCCCGAAGGCGTACCTCATGTCCTGAAA
TTCAGCCGGAACGGCAGTCTCTTACTGGCCGGCGGCGGACATGCTGCTGC
CAGTGGCCGCGTTGTGGTCTGGGATGTCAAAACCGGAAAGCGTCTCTTTG
AAGTAGGCGACGAACTGGACGCTGTGCTCTGTGCTGACATCAGCTCCGAT
CAGCGTTTTATCGCCCTGGGCAGCCCCAGCAAAGTCATTCGCGTTTATTC
CACCAGCACAGGTGAACTCGCTTACGAAATCCGTAAACACACCGACTGGA
TGACCTCGCTGGCCTTCAGCCCCGATTCCGTCCTGCTCTGTTCCGGAGAC
CGGAACGGTGGCGCGTTCGTCTGGGAAGCAGCTACGGGAAATGAATATCT
GACACTCAAGGGACATAAAGGTGGAATCACCGGGATCACCTGGCGATCCG
ACTCCAACCTGGTCGCCACCAGTAGTGAAGATCAGTCCGTCAAACTCTGG
GAAGTTCAAAACGGGAATAACATTAAATCCTGGAACGCCCATGGTGGC