mRNA_M-pyrifera_M_contig10656.1422.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10656.1422.1
Unique NamemRNA_M-pyrifera_M_contig10656.1422.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Match: D7G7C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C1_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.100e-35
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 LQLVSQCGHKWSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWTLEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW 270
            +QLV   G KWSVIA+++KA  GK +RVGKQIRERYLHHLDPNL+KG W++EE   EE LV +H +++NKWAQIAKSLPGRC NDIKNHW
Sbjct:  435 IQLVEHHGKKWSVIASQLKAENGKMTRVGKQIRERYLHHLDPNLKKGDWSVEE---EEILVREHGIHKNKWAQIAKSLPGRCSNDIKNHW 521          
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Match: A0A2G2VXH5_CAPBA (Transcriptional activator Myb n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VXH5_CAPBA)

HSP 1 Score: 95.5 bits (236), Expect = 2.170e-22
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 LQLVSQCGH-KWSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWTLEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW 270
            ++LV++ G  KWSVIA  +        R+GKQ RER+ +HL+PN++K  WTLEE R+   L+  H+++ NKWA+IAK LPGR DN IKNHW
Sbjct:  123 IELVAKYGPIKWSVIAKSLPG------RIGKQCRERWHNHLNPNIKKDAWTLEEERA---LIDAHRIHGNKWAEIAKVLPGRADNGIKNHW 204          
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Match: A0A835D3V3_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835D3V3_9MAGN)

HSP 1 Score: 98.6 bits (244), Expect = 4.640e-22
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 LQLVSQCG-HKWSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWTLEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW 270
            ++LV +CG  KWSV+A  +        R+GKQ RER+++HL+P ++K  WT EE   E TL+  HK+Y NKW +IAK LPGR DN IKNHW
Sbjct:  117 IELVEKCGCKKWSVVANSLPG------RIGKQCRERWINHLNPAIKKDAWTKEE---ELTLIHAHKIYGNKWTEIAKFLPGRADNSIKNHW 198          
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Match: D8RS06_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RS06_SELML)

HSP 1 Score: 92.4 bits (228), Expect = 5.420e-22
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 LQLVSQCG-HKWSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWTLEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW 270
            ++LV Q G  +WS+I+T M       +R GKQ RER+++HL P++RK GWT EE   EE LV  H  + NKW+ IAK LPGR DN IKNHW
Sbjct:   21 VKLVKQYGTRRWSLISTFMA------NRSGKQCRERWVNHLQPDIRKEGWTKEE---EELLVQAHSYFGNKWSAIAKMLPGRTDNSIKNHW 102          
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Match: A9TCW1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TCW1_PHYPA)

HSP 1 Score: 90.9 bits (224), Expect = 8.080e-22
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    4 QLVSQCG-HKWSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWTLEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW 270
            +LV Q G  +WS+I+T M       +R GKQ RER+++HL P++RK GWT EE   EE LV  H  + N+W+ IAK LPGR DN IKNHW
Sbjct:   15 KLVKQYGSRRWSLISTFMA------NRSGKQCRERWVNHLHPDIRKEGWTTEE---EELLVHAHSTFGNRWSAIAKMLPGRTDNSIKNHW 95          
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Match: A0A1E7EVM5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVM5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.120e-21
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   16 QCGHKWSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWTLEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW 270
            Q G KW+ IA  +        R GKQ RER+++HLDP L+KG WT +E   E  L+  H+++ N+WA I+K LPGR DND+KNHW
Sbjct:   49 QYGRKWAKIAAHLPG------RQGKQCRERFVNHLDPELKKGEWTDDE---EAILIAMHELHGNRWANISKQLPGRSDNDVKNHW 124          
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Match: A0A0A9H4S3_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9H4S3_ARUDO)

HSP 1 Score: 92.4 bits (228), Expect = 1.430e-21
Identity = 46/81 (56.79%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   28 KWSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWTLEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW 270
            KWSVIA  +        R+GKQ RER+ +HLDP +RK  WT+EE   E  LV  H VY N WA+IAK LPGR DN IKNHW
Sbjct:   60 KWSVIARSL------DGRIGKQCRERWHNHLDPQIRKEAWTVEE---ERVLVDVHGVYGNNWAEIAKLLPGRTDNSIKNHW 131          
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Match: A0A1D1XHT2_9ARAE (Myb-related protein 3R-1 n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XHT2_9ARAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.040e-21
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 LQLVSQCG-HKWSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWTLEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW 270
            ++LV++ G  KW+VIA++M        R+GKQ RER+ +HL+P + KG WT EE   E TL+  H+ Y NKWA+IAK LPGR DN IKNHW
Sbjct:  136 IELVNKYGAKKWAVIASKMPG------RIGKQCRERWHNHLNPAINKGAWTTEE---EITLIRAHQTYGNKWAEIAKFLPGRADNSIKNHW 217          
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Match: A0A8N4F9T4_ELAGV (transcription factor MYB3R-5 isoform X7 n=2 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A8N4F9T4_ELAGV)

HSP 1 Score: 92.8 bits (229), Expect = 3.790e-21
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 LQLVSQCG-HKWSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWTLEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW 270
            ++LV++ G  KWSVIA  +        R+GKQ RER+ +HL+P+++K  WT EE   E TL+  H++Y NKWA+IAK LPGR DN IKNHW
Sbjct:  115 IKLVAKHGCKKWSVIAKSLPG------RIGKQCRERWHNHLNPSIKKDAWTPEE---EVTLIHAHQIYGNKWAEIAKLLPGRTDNSIKNHW 196          
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Match: A0A6I9R6K9_ELAGV (transcription factor MYB3R-2 n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9R6K9_ELAGV)

HSP 1 Score: 95.9 bits (237), Expect = 3.860e-21
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 LQLVSQCGHK-WSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWTLEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW 270
            +QLV + G+K WSVIA  +        R+GKQ RER+ +HL+P ++K  WT EE   EE LV  H++Y NKWA+IAK LPGR DN IKNHW
Sbjct:  110 IQLVEKHGYKRWSVIAKSLPG------RIGKQCRERWHNHLNPAIKKDAWTREE---EEVLVRAHQIYGNKWAEIAKYLPGRTDNSIKNHW 191          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10656.1422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7C1_ECTSI1.100e-3570.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2G2VXH5_CAPBA2.170e-2251.65Transcriptional activator Myb n=1 Tax=Capsicum bac... [more]
A0A835D3V3_9MAGN4.640e-2251.65Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
D8RS06_SELML5.420e-2252.75Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
A9TCW1_PHYPA8.080e-2252.22Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A1E7EVM5_9STRA1.120e-2149.41Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A0A9H4S3_ARUDO1.430e-2156.79Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A1D1XHT2_9ARAE3.040e-2152.75Myb-related protein 3R-1 n=2 Tax=Anthurium amnicol... [more]
A0A8N4F9T4_ELAGV3.790e-2151.65transcription factor MYB3R-5 isoform X7 n=2 Tax=El... [more]
A0A6I9R6K9_ELAGV3.860e-2153.85transcription factor MYB3R-2 n=1 Tax=Elaeis guinee... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10656contigM-pyrifera_M_contig10656:722..1791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D7G7C1
KEGG koko:K09422
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.7786746-CDS-M-pyrifera_M_contig10656:721..8891622815575.7786746-CDS-M-pyrifera_M_contig10656:721..889Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10656 722..889 +
1692277470.9362764-CDS-M-pyrifera_M_contig10656:721..8891692277470.9362764-CDS-M-pyrifera_M_contig10656:721..889Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10656 722..889 +
1622815575.7914093-CDS-M-pyrifera_M_contig10656:1686..17911622815575.7914093-CDS-M-pyrifera_M_contig10656:1686..1791Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10656 1687..1791 +
1692277470.9462144-CDS-M-pyrifera_M_contig10656:1686..17911692277470.9462144-CDS-M-pyrifera_M_contig10656:1686..1791Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10656 1687..1791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10656.1422.1prot_M-pyrifera_M_contig10656.1422.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10656 722..1791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10656.1422.1

>prot_M-pyrifera_M_contig10656.1422.1 ID=prot_M-pyrifera_M_contig10656.1422.1|Name=mRNA_M-pyrifera_M_contig10656.1422.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
LQLVSQCGHKWSVIATRMKAACGKQSRVGKQIRERYLHHLDPNLRKGGWT
LEEARSEETLVTQHKVYQNKWAQIAKSLPGRCDNDIKNHW*
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mRNA from alignment at M-pyrifera_M_contig10656:722..1791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10656.1422.1 ID=mRNA_M-pyrifera_M_contig10656.1422.1|Name=mRNA_M-pyrifera_M_contig10656.1422.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1070bp|location=Sequence derived from alignment at M-pyrifera_M_contig10656:722..1791+ (Macrocystis pyrifera P11B4 male)
CTTCAGCTGGTGTCCCAGTGCGGGCACAAGTGGAGCGTGATCGCGACGAG GATGAAGGCGGCATGCGGGAAACAGTCGCGTGTCGGCAAGCAGATACGGG AGCGCTACCTGCACCACCTCGACCCCAACCTCAGAAAAGGGGGTTGGACG CTCGAGGAGGCAAGAAGCGTGCGAGACTGTTTTTTTTTGTTCGATTTTTC GTGCCCTGGCCGCTTTATTTTTTGTAGTCGTGGTAGTGGTGGAGGTGGTC TTGGTGTTGCGGTAGTCGTAGTCCTCTGCTTGGCACACGCGCTCCTTTCT GGGCATGAGTTACCTCCCTGCCCCCCCCCCTCCCCCACCGCCCTTATCTC GAGTAAAGCTGATGGCCAGAGTGCCGGCTTCGAAGATGGCACGCCTAAGC ATTTTCTTCCCACGCACTTTACCCGGTTGTTGATGGCTCACTTCCCTGCG ATTGAGCGGGAAATTGGACTATTACGGGGGATCATAATAAATAGGACCTA CGATATACACTAAAACCTATATATTTACTTATTTTTACTGACAATATTTA GTCCTATTTACTATGGCCCCCCGAATAGCGTATAGCGTAAGCAGCCGCCT CCCCCCGTCGATACACTGCGTGTGACGGCCTGCTGTTTCCCCGATTTGCT TGGCGCCAGGACGAGCCCCACGCAGGGGCCAGCATACGACTGCCGCGGCA TCCTTGGATCTGCACGGGTCGTGCGTGGTTCTTGACATGGTTGAAGTTTT CGTCGAGTTGGGGTTCGGATCAGGGTTGGGGTTAGGGTTGGGGTTCGGAT CAGGGTTAGGTTTTTTGCGGTAAGGTTTGCCTGCGGCCGGTTGGCATATC TCCGGCCGTGGCCTTCTGAGCGCGCAGGATGTCGGCCGGCGAGCGAGCTC GGCCTCGTCCCCTCCATCCTGTCCCGATTTCCGAACGCCTCCTCTCGCCC TGGTGATTGCCGCAGGAGGAAACGCTTGTGACACAGCATAAGGTCTACCA GAACAAGTGGGCGCAAATCGCGAAGTCGCTTCCGGGCCGCTGCGATAACG ACATCAAGAATCATTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10656:722..1791+

>mRNA_M-pyrifera_M_contig10656.1422.1 ID=mRNA_M-pyrifera_M_contig10656.1422.1|Name=mRNA_M-pyrifera_M_contig10656.1422.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig10656:722..1791+ (Macrocystis pyrifera P11B4 male)
CTTCAGCTGGTGTCCCAGTGCGGGCACAAGTGGAGCGTGATCGCGACGAG
GATGAAGGCGGCATGCGGGAAACAGTCGCGTGTCGGCAAGCAGATACGGG
AGCGCTACCTGCACCACCTCGACCCCAACCTCAGAAAAGGGGGTTGGACG
CTCGAGGAGGCAAGAAGCCTTCAGCTGGTGTCCCAGTGCGGGCACAAGTG
GAGCGTGATCGCGACGAGGATGAAGGCGGCATGCGGGAAACAGTCGCGTG
TCGGCAAGCAGATACGGGAGCGCTACCTGCACCACCTCGACCCCAACCTC
AGAAAAGGGGGTTGGACGCTCGAGGAGGCAAGAAGCGAGGAAACGCTTGT
GACACAGCATAAGGTCTACCAGAACAAGTGGGCGCAAATCGCGAAGTCGC
TTCCGGGCCGCTGCGATAACGACATCAAGAATCATTGGTGAGAGGAAACG
CTTGTGACACAGCATAAGGTCTACCAGAACAAGTGGGCGCAAATCGCGAA
GTCGCTTCCGGGCCGCTGCGATAACGACATCAAGAATCATTGGTGA
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