mRNA_M-pyrifera_M_contig106532.1411.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106532.1411.1
Unique NamemRNA_M-pyrifera_M_contig106532.1411.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Match: A0A482R4T8_9EURY (Alkaline phosphatase family protein n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482R4T8_9EURY)

HSP 1 Score: 137 bits (345), Expect = 5.790e-35
Identity = 75/161 (46.58%), Postives = 102/161 (63.35%), Query Frame = 1
Query:    1 VRLVLLDNRWAKDGFDVKGG-DMLGEAQWALLRRELETEAWNDEFHVTLVMAGLQMLSRSKLAVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAEISRLACKAVGYPLFDVTSSGMTHSWRGPILSPLIHYYVGDHLRPPAAPHMFDGLNFGEID 480
             RL+LLDNR  +D +  +   DMLGE QWA L   L T        +TL+ +GLQ+L+R    V+E++ R P+SQARLLAL+       V+ LSGDVH+AEI+R+AC AVGYPL+D TSSG+THSW  P+   ++   +    R P A  M+ G NFG ++
Sbjct:  213 TRLILLDNRTLRDPYGSESTQDMLGEEQWAWLEHILRTTT----SEITLIGSGLQVLARGDPLVSESWSRLPQSQARLLALIAATGTTGVLFLSGDVHFAEINRVACDAVGYPLYDFTSSGLTHSWGAPVKRQIVDMLLMASTRVPGA--MYPGKNFGTVE 367          
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Match: K3WK28_GLOUD (PhoD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WK28_GLOUD)

HSP 1 Score: 112 bits (279), Expect = 5.090e-26
Identity = 71/174 (40.80%), Postives = 98/174 (56.32%), Query Frame = 1
Query:    1 VRLVLLDNRWAKDGFDVKGGDMLGEAQWALLRRELETE--AWNDEFHVTLVMAGLQMLSRSKLAVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAEISRLACKAVGYPLFDVTSSGMTHSWRGPILSPLIHYYVGDHLRPPAA-------PHMFD---GLNFGEIDFD 486
            V+ +LLD R+ KD +D+  GD LG AQWA L REL T   A+N      ++++G+Q+L   +    E + R  R + RLL ++    AK V+LLSGDVH+AEI+++ C      + +VTSSGMTHS      S L+    G   R   A       PH  D   GLNFGE++FD
Sbjct:  179 VKFILLDVRYNKDPYDIDDGDFLGAAQWAWLERELATSLAAFN------VLVSGVQILPTDRFYGGEHWHRFERQRMRLLGMILKSNAKGVILLSGDVHFAEINQVQCDDYKNLITEVTSSGMTHSVEASRASSLLGSLPGLVFRIANALLPLEFRPHRHDYYGGLNFGELEFD 346          
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Match: A0A024TBS3_9STRA (PhoD domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBS3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.410e-26
Identity = 66/170 (38.82%), Postives = 102/170 (60.00%), Query Frame = 1
Query:    1 VRLVLLDNRWAKDGFDVKGGDMLGEAQWALLRRELETEAWNDEFHVTLVMAGLQMLSRSKL-AVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAEISRLACKAVGYPLFDVTSSGMTHSWR------GPILSPLIHYYVGDHLRPPAAPHMFDG-LNFGEIDFD 486
            V+ +LLDNR+ +D +  + GD LG+AQW  L  EL T          +V AG+Q+L   +   + E++ + P+++ARLL+L+   RA  V+LLSGDVH+AEI+++ C    Y L +++SSGMTH+W+      GP  + L +  +  H R    PH + G  NFG++ FD
Sbjct:  174 VKFILLDNRYHRDPYGTEFGDFLGQAQWTWLEHELMTSTAT----FNIVAAGIQVLPDDRWHKIGESWSKFPKARARLLSLIQSSRASGVILLSGDVHFAEINQVRC-GDAYNLTEISSSGMTHAWKLMRGVIGPAFT-LANMILPWHFR--VDPHQYYGSYNFGDVAFD 335          
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Match: A0A8K1CJL6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJL6_PYTOL)

HSP 1 Score: 111 bits (278), Expect = 6.740e-26
Identity = 66/166 (39.76%), Postives = 95/166 (57.23%), Query Frame = 1
Query:    1 VRLVLLDNRWAKDGFDVKGGDMLGEAQWALLRRELETEAWNDEFHVTLVMAGLQMLSRSKLAVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAEISRLACKAVGYPLFDVTSSGMTHSWRGPILSPLIHYYVGDHLRP-PAAPH---MFDGLNFGEIDFD 486
            V+ +LLD R+ KD ++   GD LGE QW  L  EL T   +  FHV  +++G+Q+L   ++   E + R P  + RLL LL    AK V+LLSGDVH+AEI+++ C      + ++TSSGMTHSW          +   + + P P  PH   ++   NFGEI+FD
Sbjct:  184 VKFILLDVRYNKDAYEDARGDFLGEKQWQWLEDELTTSTAS--FHV--IVSGVQILPDDRVLPGENWARFPYQRRRLLNLLLKSNAKGVILLSGDVHFAEINQVQCSEYRSIITEITSSGMTHSWGEANWFDAFIFQAANLILPWPFRPHHSSVYGHKNFGEIEFD 345          
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Match: A0A8K1CHZ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHZ4_PYTOL)

HSP 1 Score: 110 bits (274), Expect = 2.310e-25
Identity = 65/171 (38.01%), Postives = 98/171 (57.31%), Query Frame = 1
Query:    1 VRLVLLDNRWAKDGFDVKGGDMLGEAQWALLRRELETEAWNDEFHVTLVMAGLQMLSRSKLAVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAEISRLACKAVGYPLFDVTSSGMTHSW-----RGPILSPLIHYYVGDHLRP----PAAPHMFDGLNFGEIDFD 486
            V+ +L+DNR+ +D + +  GD LGEAQWA L  EL T   +  F+V  +++G+Q+L   +   AE++ R P  + RL+  +    AK V+LLSGDVH+AEI+++ C      L ++TSSGMTHSW     R     P + +   + L P    P    ++  LN+G ID D
Sbjct:  176 VKFILVDNRYHRDEYHLHDGDFLGEAQWAWLENELATS--DAAFNV--IVSGIQILPADRFFPAESWSRFPHQRERLIKSILSSHAKGVILLSGDVHFAEINQIVCSDGRNVLTEMTSSGMTHSWMQFHFRSIKFFPALLFTFANMLLPWEFRPQHDSLYGYLNWGMIDID 342          
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Match: A0A6G0XBP6_9STRA (PhoD domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBP6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.070e-25
Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query:    1 VRLVLLDNRWAKDGFDVKGGDMLGEAQWALLRRELETEAWNDEFHVTLVMAGLQMLSRSK-LAVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAEISRLACKAVGYPLFDVTSSGMTHSWRGPILS------PLIHYYVGDHLRP----PAAPHMFDGLNFGEIDFD 486
            V+ +LLDNR+ +D +   GGD LGEAQW  L  EL T      F+V  + +G+++L   +   + ET+ + P S+ RLL L+   RA  V+LLSGDVHYAEI ++ C +  Y L ++T+SGMTHSW+   L+      P I + + + + P          + G NF ++ FD
Sbjct:  172 VKFILLDNRYHRDPYSTPGGDFLGEAQWKWLENELMTTTAT--FNV--IASGIEILPNDRWYKIGETWSKFPASRTRLLNLIQTSRASGVILLSGDVHYAEIHQVNCGSK-YALTEITTSGMTHSWKHFNLASRIGIIPSIGFTLANMILPWQYRVRPDEYYGGFNFADMHFD 339          
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Match: A0A225WW43_9STRA (PhoD domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WW43_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.310e-24
Identity = 62/177 (35.03%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    1 VRLVLLDNRWAKDGFDVKGGDMLGEAQWALLRREL--ETEAWNDEFHVTLVMAGLQMLSRSKLAVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAEISRLACKAVGYPLFDVTSSGMTHSWRG---------PILSPLIHYYVGDHLRP----PAAPHMFDGLNFGEIDFD 486
            ++ +L+DNR+ +D +  K G++LG+AQW  +  EL   T A+N      ++++G+Q+L   +  VAE + R P  + RLL L+    AK V+LLSGDVH++EI+++ C      + ++TSSGMTHSW             +  L+  Y  + + P    P     +  LN+G IDFD
Sbjct:  203 IKFILVDNRYHRDDYSTKDGNLLGDAQWKWVENELMTSTAAFN------VIVSGVQILPGDRYPVAECWGRFPNERERLLKLILASNAKGVILLSGDVHFSEINQVVCSNGANTITEITSSGMTHSWMDWMEFHVPSMKYIMALLFTYA-NLVMPWEFRPTQKSFYGHLNWGSIDFD 372          
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Match: A0A2D4BGA6_PYTIN (PhoD domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGA6_PYTIN)

HSP 1 Score: 108 bits (269), Expect = 2.430e-24
Identity = 67/171 (39.18%), Postives = 101/171 (59.06%), Query Frame = 1
Query:    1 VRLVLLDNRWAKDGFDVKGGDMLGEAQWALLRRELE--TEAWNDEFHVTLVMAGLQMLSRSKLAVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAEISRLACKAVGYPLFDVTSSGMTHSW--RGPILSPLIHYYVGDHLRPP----AAPHMFDGL-NFGEIDFD 486
            VR++LLD R+ KD +    GD LG+AQWA L +EL   T A+N      L+++G+Q+L   +    E + R P+ + RLL L+    A+ V+L+SGDVH+AE++++AC      + +VTSSGMTH W  + P  S +   +   ++  P      P+ + GL NF EIDFD
Sbjct:  180 VRIILLDVRYNKDPYGATDGDFLGDAQWAWLEQELRDSTAAFN------LIVSGVQILPADRFFGGENWQRFPQQRRRLLDLILTSNARGVLLMSGDVHFAELNQVACNDYKNIITEVTSSGMTHXWDKQSPWRSIMALLFRAANVVLPWDYRPHPNAYYGLRNFAEIDFD 344          
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Match: A0A5B6TLS7_9BACT (Alkaline phosphatase family protein n=1 Tax=Rufibacter hautae TaxID=2595005 RepID=A0A5B6TLS7_9BACT)

HSP 1 Score: 104 bits (260), Expect = 1.070e-23
Identity = 64/169 (37.87%), Postives = 95/169 (56.21%), Query Frame = 1
Query:    1 VRLVLLDNRWAKDGFDVKG--------GDMLGEAQWALLRRELETEAWNDEFHVTLVMAGLQMLSRSKLAVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAEISRLACKAVGYPLFDVTSSGMTHSWRGPILSPLIHYYVGDHLRPPAAPHMFDGLNFGEIDF 483
            V+++LLD R+ +D    +         GDMLGEAQW  L +EL       +FH  L+  GLQ+++       E +   P+S+ RL  L+   +A  V+LLSGD H+AE+S+++   V YP++D TSSG+TH W+G +++    Y VGD         M D LNFG + F
Sbjct:  167 VKVILLDGRFHRDSLQGQEPAYQNNTKGDMLGEAQWRWLEKELRNS--KAQFH--LIGTGLQIIADDH--GYERWGNFPKSRERLFNLIAQTKAPNVILLSGDRHFAELSKISWPGVPYPIYDFTSSGLTHFWKGGLVNEPNRYRVGD---------MHDKLNFGVMRF 320          
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Match: A0A7S1TQB0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQB0_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.740e-23
Identity = 71/162 (43.83%), Postives = 97/162 (59.88%), Query Frame = 1
Query:    1 VRLVLLDNRWAKDGFDVK-GGDMLGEAQWALLRRELETEAWNDEFHVTLVMAGLQMLSRSKLAVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAEISRLACKAVGY----PLFDVTSSGMTHSWRGP-------ILSPL------IHYYVGDHLRP 432
            VR+VLLDNR+ KD +  +  GDMLGE QWA L ++L   A + + +  LV AGLQML   + A+ ET+ R PR++ARL+ L+    A   VLLSGDVHY+EI+ + C+A        + +VT+SGMTHSW  P       + + L      I Y+V D L P
Sbjct:  185 VRVVLLDNRYHKDPWSARPDGDMLGEEQWAWLEQQLAAPAVDVQLY--LVGAGLQMLPDDR-AIGETWGRFPRARARLMDLVSRAAAP-AVLLSGDVHYSEITDVRCRANSTGGVKDIAEVTASGMTHSWGEPKGFMGHNVFNKLGDVGAAISYFVNDILNP 342          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106532.1411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482R4T8_9EURY5.790e-3546.58Alkaline phosphatase family protein n=1 Tax=Methan... [more]
K3WK28_GLOUD5.090e-2640.80PhoD domain-containing protein n=1 Tax=Globisporan... [more]
A0A024TBS3_9STRA5.410e-2638.82PhoD domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A8K1CJL6_PYTOL6.740e-2639.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8K1CHZ4_PYTOL2.310e-2538.01Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XBP6_9STRA4.070e-2538.15PhoD domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A225WW43_9STRA2.310e-2435.03PhoD domain-containing protein n=1 Tax=Phytophthor... [more]
A0A2D4BGA6_PYTIN2.430e-2439.18PhoD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A5B6TLS7_9BACT1.070e-2337.87Alkaline phosphatase family protein n=1 Tax=Rufiba... [more]
A0A7S1TQB0_9STRA2.740e-2343.83Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106532contigM-pyrifera_M_contig106532:131..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog115417.EPrPW00000016682
KEGG rclassRC00017
KEGG koko:K01113
KEGG ReactionR04620
KEGG Pathwayko00790,ko01100,ko02020,map00790,map01100,map02020
KEGG ModuleM00126
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MDMW@121069,2QTGZ@2759,COG3540@1
EC3.1.3.1
COG Functional cat.P
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.358578-CDS-M-pyrifera_M_contig106532:130..6161622815575.358578-CDS-M-pyrifera_M_contig106532:130..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106532 131..616 +
1692277470.7766855-CDS-M-pyrifera_M_contig106532:130..6161692277470.7766855-CDS-M-pyrifera_M_contig106532:130..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106532 131..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106532.1411.1prot_M-pyrifera_M_contig106532.1411.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106532 131..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106532.1411.1

>prot_M-pyrifera_M_contig106532.1411.1 ID=prot_M-pyrifera_M_contig106532.1411.1|Name=mRNA_M-pyrifera_M_contig106532.1411.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
VRLVLLDNRWAKDGFDVKGGDMLGEAQWALLRRELETEAWNDEFHVTLVM
AGLQMLSRSKLAVAETFFRHPRSQARLLALLGLGRAKRVVLLSGDVHYAE
ISRLACKAVGYPLFDVTSSGMTHSWRGPILSPLIHYYVGDHLRPPAAPHM
FDGLNFGEIDFD
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mRNA from alignment at M-pyrifera_M_contig106532:131..616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106532.1411.1 ID=mRNA_M-pyrifera_M_contig106532.1411.1|Name=mRNA_M-pyrifera_M_contig106532.1411.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig106532:131..616+ (Macrocystis pyrifera P11B4 male)
GTGAGATTGGTGTTGCTTGATAATCGTTGGGCCAAAGATGGGTTTGACGT GAAGGGTGGGGACATGTTGGGCGAGGCGCAGTGGGCGTTGCTGCGGCGGG AGCTGGAGACGGAGGCGTGGAACGACGAGTTCCACGTGACGCTGGTGATG GCGGGCTTGCAGATGCTGTCGAGGTCCAAGCTAGCCGTTGCAGAAACGTT TTTCCGCCATCCTCGGTCGCAGGCGCGGTTGCTGGCGTTGTTGGGGCTTG GAAGGGCGAAACGAGTGGTGCTCCTGTCAGGTGATGTGCACTATGCGGAA ATTTCGAGGCTGGCCTGCAAAGCAGTGGGCTATCCGCTTTTCGACGTCAC TTCCAGCGGCATGACGCACTCGTGGAGAGGCCCCATCCTCTCCCCGCTCA TCCACTACTACGTCGGAGACCACCTGCGGCCTCCAGCCGCACCACACATG TTCGACGGCCTCAATTTCGGCGAAATCGACTTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106532:131..616+

>mRNA_M-pyrifera_M_contig106532.1411.1 ID=mRNA_M-pyrifera_M_contig106532.1411.1|Name=mRNA_M-pyrifera_M_contig106532.1411.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig106532:131..616+ (Macrocystis pyrifera P11B4 male)
GTGAGATTGGTGTTGCTTGATAATCGTTGGGCCAAAGATGGGTTTGACGT
GAAGGGTGGGGACATGTTGGGCGAGGCGCAGTGGGCGTTGCTGCGGCGGG
AGCTGGAGACGGAGGCGTGGAACGACGAGTTCCACGTGACGCTGGTGATG
GCGGGCTTGCAGATGCTGTCGAGGTCCAAGCTAGCCGTTGCAGAAACGTT
TTTCCGCCATCCTCGGTCGCAGGCGCGGTTGCTGGCGTTGTTGGGGCTTG
GAAGGGCGAAACGAGTGGTGCTCCTGTCAGGTGATGTGCACTATGCGGAA
ATTTCGAGGCTGGCCTGCAAAGCAGTGGGCTATCCGCTTTTCGACGTCAC
TTCCAGCGGCATGACGCACTCGTGGAGAGGCCCCATCCTCTCCCCGCTCA
TCCACTACTACGTCGGAGACCACCTGCGGCCTCCAGCCGCACCACACATG
TTCGACGGCCTCAATTTCGGCGAAATCGACTTCGACGTGAGATTGGTGTT
GCTTGATAATCGTTGGGCCAAAGATGGGTTTGACGTGAAGGGTGGGGACA
TGTTGGGCGAGGCGCAGTGGGCGTTGCTGCGGCGGGAGCTGGAGACGGAG
GCGTGGAACGACGAGTTCCACGTGACGCTGGTGATGGCGGGCTTGCAGAT
GCTGTCGAGGTCCAAGCTAGCCGTTGCAGAAACGTTTTTCCGCCATCCTC
GGTCGCAGGCGCGGTTGCTGGCGTTGTTGGGGCTTGGAAGGGCGAAACGA
GTGGTGCTCCTGTCAGGTGATGTGCACTATGCGGAAATTTCGAGGCTGGC
CTGCAAAGCAGTGGGCTATCCGCTTTTCGACGTCACTTCCAGCGGCATGA
CGCACTCGTGGAGAGGCCCCATCCTCTCCCCGCTCATCCACTACTACGTC
GGAGACCACCTGCGGCCTCCAGCCGCACCACACATGTTCGACGGCCTCAA
TTTCGGCGAAATCGACTTCGAC
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